Wall clock time and date at job start Mon Mar 30 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46847 * 2 1 4 4 C 1.38406 * 119.82381 * 90.00111 * 3 2 1 5 5 C 1.37891 * 120.17173 * 179.72470 * 4 3 2 6 6 C 1.39859 * 119.82107 * 0.25337 * 5 4 3 7 7 C 1.47168 * 120.16523 * 180.02562 * 6 5 4 8 8 O 1.21246 * 120.00377 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99360 * 179.97438 * 7 6 5 10 10 H 1.08994 * 109.47025 * 35.00343 * 9 7 6 11 11 C 1.50704 * 109.46576 * 155.00287 * 9 7 6 12 12 H 1.07998 * 120.00291 * 5.43999 * 11 9 7 13 13 C 1.37879 * 119.99714 * 185.44746 * 11 9 7 14 14 N 1.31513 * 119.99911 * 9.55020 * 13 11 9 15 15 Si 1.86800 * 119.99965 * 189.54761 * 13 11 9 16 16 H 1.48501 * 109.46772 * 84.99470 * 15 13 11 17 17 H 1.48493 * 109.47248 * 204.99131 * 15 13 11 18 18 H 1.48506 * 109.47271 * 324.99926 * 15 13 11 19 19 C 1.52992 * 109.47328 * 274.99758 * 9 7 6 20 20 C 1.53001 * 109.47047 * 65.85623 * 19 9 7 21 21 C 1.39847 * 119.65959 * 0.02562 * 6 5 4 22 22 C 1.37894 * 119.82478 * 359.97438 * 21 6 5 23 23 H 1.09000 * 109.47018 * 299.99493 * 1 2 3 24 24 H 1.08995 * 109.47144 * 60.00067 * 1 2 3 25 25 H 1.08995 * 109.46690 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47018 * 240.00507 * 2 1 3 27 27 H 1.08995 * 109.47144 * 119.99933 * 2 1 3 28 28 H 1.08001 * 119.91551 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.08682 * 180.23394 * 5 4 3 30 30 H 0.96999 * 119.99681 * 179.97438 * 14 13 11 31 31 H 1.09005 * 109.47236 * 185.84979 * 19 9 7 32 32 H 1.08997 * 109.47679 * 305.85249 * 19 9 7 33 33 H 1.09005 * 109.47617 * 179.97438 * 20 19 9 34 34 H 1.09007 * 109.47025 * 300.00020 * 20 19 9 35 35 H 1.09003 * 109.46959 * 59.99704 * 20 19 9 36 36 H 1.07999 * 120.08892 * 180.02562 * 21 6 5 37 37 H 1.07998 * 119.91186 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0698 1.2008 5 6 2.7267 3.3680 1.2091 6 6 2.9614 4.0305 0.0000 7 6 3.4582 5.4158 0.0001 8 8 3.6655 5.9855 1.0501 9 6 3.7103 6.1259 -1.3051 10 1 2.9694 5.8101 -2.0395 11 6 3.6067 7.6146 -1.0951 12 1 3.4684 8.0113 -0.1002 13 6 3.6883 8.4702 -2.1732 14 7 3.6674 7.9895 -3.3972 15 14 3.8286 10.3121 -1.8954 16 1 5.2531 10.6733 -1.6820 17 1 3.3079 11.0331 -3.0845 18 1 3.0365 10.6939 -0.6986 19 6 5.1113 5.7787 -1.8122 20 6 5.1723 4.2909 -2.1639 21 6 2.7216 3.3698 -1.2090 22 6 2.2566 2.0717 -1.2007 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0808 1.5566 2.1336 29 1 2.9089 3.8718 2.1469 30 1 3.7244 8.5915 -4.1556 31 1 5.3336 6.3712 -2.6998 32 1 5.8438 5.9989 -1.0357 33 1 6.1704 4.0436 -2.5256 34 1 4.9500 3.6984 -1.2763 35 1 4.4398 4.0708 -2.9405 36 1 2.9008 3.8747 -2.1468 37 1 2.0713 1.5600 -2.1335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:12 Heat of formation + Delta-G solvation = -49.876084 kcal Electronic energy + Delta-G solvation = -17643.577624 eV Core-core repulsion = 14963.442215 eV Total energy + Delta-G solvation = -2680.135409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13929 -39.34291 -36.41120 -34.99893 -33.74216 -31.80485 -30.55404 -29.62010 -26.33076 -24.89692 -23.88621 -22.79286 -22.00169 -20.19312 -18.60616 -17.71635 -16.94825 -16.37831 -16.14545 -15.91778 -15.49671 -15.00578 -14.69155 -14.42955 -14.28223 -14.09921 -13.95299 -13.53165 -13.36914 -13.18849 -12.86996 -12.68286 -12.55689 -12.20957 -12.10685 -11.94640 -11.76799 -11.70811 -11.46551 -11.03706 -10.50503 -10.14703 -9.85760 -9.58281 -8.20998 -6.27530 -0.19766 0.48726 1.37656 1.39005 1.48940 1.65098 2.40136 2.90612 3.10219 3.40158 3.85517 3.91064 4.07751 4.29589 4.39406 4.48226 4.52821 4.54630 4.59349 4.64240 4.72334 4.80577 5.01455 5.05711 5.07887 5.14480 5.18422 5.23480 5.29506 5.42950 5.46365 5.52604 5.59771 5.66921 5.70898 5.83739 6.03196 6.21094 6.76870 6.89320 7.38205 8.87757 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035879 B = 0.005508 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.207783 B = 5082.360200 C = 5260.584456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.051 4.051 4 C -0.134 4.134 5 C -0.079 4.079 6 C -0.191 4.191 7 C 0.398 3.602 8 O -0.506 6.506 9 C 0.006 3.994 10 H 0.048 0.952 11 C -0.541 4.541 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.906 5.906 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.278 1.278 19 C -0.095 4.095 20 C -0.148 4.148 21 C -0.069 4.069 22 C -0.135 4.135 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.118 0.882 30 H 0.266 0.734 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -17.623 2.666 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.151 4.151 5 C -0.097 4.097 6 C -0.192 4.192 7 C 0.280 3.720 8 O -0.385 6.385 9 C -0.013 4.013 10 H 0.066 0.934 11 C -0.579 4.579 12 H 0.060 0.940 13 C -0.173 4.173 14 N -0.544 5.544 15 Si 0.774 3.226 16 H -0.199 1.199 17 H -0.198 1.198 18 H -0.203 1.203 19 C -0.133 4.133 20 C -0.204 4.204 21 C -0.087 4.087 22 C -0.152 4.152 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.168 0.832 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.685 -17.276 3.010 17.919 hybrid contribution 0.221 1.702 0.088 1.718 sum -3.464 -15.574 3.098 16.252 Atomic orbital electron populations 1.21753 0.94053 1.02687 1.01918 1.20675 0.96544 0.90372 1.04485 1.20527 0.94784 0.97372 0.92419 1.21217 1.00923 0.93671 0.99312 1.21483 0.95914 0.95392 0.96948 1.20717 1.06950 0.95810 0.95731 1.23458 0.70591 0.86541 0.91456 1.90307 1.43020 1.68776 1.36405 1.19124 0.96078 0.94651 0.91399 0.93396 1.21269 1.51291 0.91926 0.93408 0.93961 1.25550 0.94325 1.02714 0.94742 1.70010 1.49776 1.36476 0.98126 0.85716 0.78594 0.80568 0.77690 1.19921 1.19832 1.20307 1.21240 0.95634 0.96441 0.99983 1.22140 1.01840 0.95316 1.01140 1.21871 0.94132 0.95332 0.97321 1.21311 1.00629 0.93994 0.99296 0.93076 0.92995 0.90557 0.89318 0.89442 0.83153 0.86347 0.92471 0.92084 0.95565 0.92163 0.92735 0.91747 0.84727 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.90 71.98 0.71 -1.26 16 2 C -0.08 -1.19 6.05 29.85 0.18 -1.01 16 3 C -0.05 -1.11 5.14 -19.78 -0.10 -1.22 16 4 C -0.13 -3.30 9.68 22.23 0.22 -3.08 16 5 C -0.08 -2.63 9.60 22.58 0.22 -2.41 16 6 C -0.19 -7.36 4.94 -20.15 -0.10 -7.46 16 7 C 0.40 19.30 5.90 28.04 0.17 19.46 16 8 O -0.51 -27.42 15.78 -2.92 -0.05 -27.46 16 9 C 0.01 0.33 1.62 -12.29 -0.02 0.31 16 10 H 0.05 2.56 6.69 -2.39 -0.02 2.54 16 11 C -0.54 -31.99 8.28 25.60 0.21 -31.78 16 12 H 0.04 2.65 7.00 -2.91 -0.02 2.63 16 13 C 0.03 1.53 5.15 84.66 0.44 1.97 16 14 N -0.91 -51.51 12.17 21.45 0.26 -51.25 16 15 Si 0.95 45.28 29.55 68.60 2.03 47.31 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 C -0.09 -4.47 5.28 30.59 0.16 -4.31 16 20 C -0.15 -5.36 8.24 71.98 0.59 -4.77 16 21 C -0.07 -2.23 7.06 22.58 0.16 -2.07 16 22 C -0.13 -3.31 9.68 22.23 0.22 -3.10 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 1.03 8.08 -2.39 -0.02 1.02 16 27 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.12 4.05 7.65 -2.91 -0.02 4.03 16 30 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.06 3.15 6.79 -2.38 -0.02 3.13 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.90 16 34 H 0.05 1.91 5.29 -2.38 -0.01 1.90 16 35 H 0.06 2.19 6.53 -2.39 -0.02 2.17 16 36 H 0.14 4.58 4.24 -2.91 -0.01 4.57 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -67.46 300.82 6.34 -61.12 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.05 Total: 11.01 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 3.05 Total: -40.72 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.26 Total: -51.25 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.46 6.34 -61.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.244 kcal (2) G-P(sol) polarization free energy of solvation -67.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds