Wall clock time and date at job start Mon Mar 30 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48500 * 109.47280 * 274.65441 * 3 2 1 5 5 H 1.48501 * 109.47050 * 34.65554 * 3 2 1 6 6 H 1.48500 * 109.47387 * 154.65288 * 3 2 1 7 7 C 1.39890 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00346 * 162.15993 * 7 2 1 9 9 C 1.41221 * 120.00072 * 342.16784 * 7 2 1 10 10 C 1.40829 * 120.18262 * 155.14223 * 9 7 2 11 11 C 1.36432 * 119.81330 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18762 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.82168 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99951 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46863 * 179.97438 * 14 13 12 16 16 C 1.54968 * 110.92229 * 71.54227 * 15 14 13 17 17 C 1.54264 * 104.16342 * 156.29597 * 16 15 14 18 18 C 1.53886 * 106.63659 * 336.44233 * 17 16 15 19 19 C 1.54262 * 106.59748 * 359.97438 * 18 17 16 20 20 C 1.39315 * 120.36033 * 0.25894 * 12 11 10 21 21 C 1.36443 * 120.18607 * 359.48456 * 20 12 11 22 22 H 0.97000 * 119.99370 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.09045 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.90647 * 179.97438 * 11 10 9 25 25 H 1.08997 * 109.47134 * 59.99520 * 14 13 12 26 26 H 1.08999 * 109.46858 * 300.00021 * 14 13 12 27 27 H 1.08996 * 110.67489 * 308.23713 * 15 14 13 28 28 H 1.09002 * 110.47692 * 37.64049 * 16 15 14 29 29 H 1.08999 * 110.52887 * 274.97391 * 16 15 14 30 30 H 1.08997 * 110.03357 * 217.14035 * 17 16 15 31 31 H 1.09000 * 110.03792 * 95.75099 * 17 16 15 32 32 H 1.09001 * 110.02895 * 119.25810 * 18 17 16 33 33 H 1.09001 * 110.03298 * 240.64097 * 18 17 16 34 34 H 1.08998 * 110.48806 * 142.28470 * 19 18 17 35 35 H 1.09008 * 110.48494 * 264.79911 * 19 18 17 36 36 H 1.08002 * 119.90542 * 179.71994 * 20 12 11 37 37 H 1.07998 * 120.09449 * 180.25322 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3954 5 1 1.4930 2.6222 0.7961 6 1 3.5861 1.4138 0.5994 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3531 -2.4050 0.3756 10 6 1.8225 -3.6475 -0.0924 11 6 1.1835 -4.7958 0.2743 12 6 0.0699 -4.7416 1.1096 13 8 -0.5602 -5.8881 1.4691 14 6 -1.6960 -5.7625 2.3271 15 6 -2.2695 -7.1503 2.6205 16 6 -1.3336 -7.9477 3.5637 17 6 -2.2632 -8.9811 4.2327 18 6 -3.6883 -8.4053 4.1576 19 6 -3.5756 -7.0413 3.4460 20 6 -0.4038 -3.5162 1.5730 21 6 0.2269 -2.3590 1.2199 22 1 -0.4849 0.8401 -0.0004 23 1 2.6855 -3.6912 -0.7403 24 1 1.5420 -5.7495 -0.0841 25 1 -2.4551 -5.1521 1.8380 26 1 -1.3950 -5.2884 3.2613 27 1 -2.4422 -7.6989 1.6946 28 1 -0.8949 -7.2882 4.3125 29 1 -0.5531 -8.4503 2.9924 30 1 -1.9734 -9.1255 5.2735 31 1 -2.2148 -9.9291 3.6969 32 1 -4.3312 -9.0735 3.5845 33 1 -4.0903 -8.2712 5.1619 34 1 -4.4301 -6.8822 2.7884 35 1 -3.5018 -6.2351 4.1760 36 1 -1.2705 -3.4824 2.2165 37 1 -0.1391 -1.4101 1.5833 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048022499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:00 Heat of formation + Delta-G solvation = -45.675990 kcal Electronic energy + Delta-G solvation = -17100.673419 eV Core-core repulsion = 14420.720140 eV Total energy + Delta-G solvation = -2679.953279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04601 -37.83314 -36.12975 -33.32408 -30.54554 -29.59234 -28.88559 -28.63778 -25.15160 -24.17295 -21.20360 -20.59001 -20.21102 -19.68373 -17.32037 -16.84994 -16.01124 -15.36382 -15.01156 -14.78348 -14.05665 -13.91748 -13.33691 -13.06674 -12.86916 -12.34486 -11.93611 -11.83896 -11.58516 -11.30156 -11.15000 -11.10613 -11.00075 -10.91884 -10.67852 -10.52154 -10.47619 -10.40468 -9.79887 -9.74889 -9.32709 -8.97827 -7.62070 -6.97062 -6.70215 -4.22280 2.79692 2.99430 3.09434 3.13906 3.23967 3.96988 4.08054 4.59437 4.62675 4.65463 4.84025 5.30356 5.41256 5.52062 5.57137 5.61444 5.65389 5.69528 5.78670 5.86791 5.89607 6.04260 6.06804 6.16919 6.22063 6.31713 6.34750 6.44544 6.77964 6.92786 7.09726 7.31150 7.45155 7.59297 7.94802 8.03158 8.18890 8.49256 8.69165 8.92990 9.02945 10.24648 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.049992 B = 0.004147 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.955892 B = 6750.066844 C = 7104.855119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.115 4.115 12 C -0.006 4.006 13 O -0.329 6.329 14 C 0.076 3.924 15 C -0.090 4.090 16 C -0.116 4.116 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.174 4.174 21 C -0.134 4.134 22 H 0.279 0.721 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 -9.764 6.572 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.216 4.216 11 C -0.134 4.134 12 C -0.050 4.050 13 O -0.245 6.245 14 C 0.000 4.000 15 C -0.109 4.109 16 C -0.153 4.153 17 C -0.164 4.164 18 C -0.160 4.160 19 C -0.156 4.156 20 C -0.193 4.193 21 C -0.153 4.153 22 H 0.089 0.911 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.797 -9.792 6.510 13.110 hybrid contribution 0.119 1.061 0.030 1.068 sum -5.678 -8.731 6.540 12.298 Atomic orbital electron populations 1.69847 1.07525 1.28971 1.36404 1.25866 0.94693 1.01182 0.92394 0.86345 0.80753 0.80897 0.78966 1.19672 1.20149 1.18497 1.19459 0.98067 0.91252 1.40677 0.90538 1.17587 0.91887 0.92164 0.89918 1.20593 1.03207 0.92282 1.05484 1.19611 0.95776 0.97626 1.00369 1.18588 0.97522 0.83964 1.04894 1.85791 1.42691 1.30808 1.65170 1.22441 0.87851 0.96184 0.93498 1.22128 0.94636 0.95287 0.98833 1.22387 0.97555 0.97283 0.98102 1.22158 0.94915 0.98777 1.00519 1.22106 0.97094 0.96553 1.00277 1.22338 0.96943 0.97540 0.98732 1.20623 1.01364 0.92948 1.04396 1.20936 0.98499 0.96456 0.99440 0.91061 0.88266 0.88591 0.93239 0.93220 0.89936 0.91589 0.91250 0.92086 0.92035 0.91980 0.91978 0.91495 0.91368 0.88811 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.00 10.98 55.54 0.61 -20.39 16 2 C 0.08 1.91 5.13 -17.34 -0.09 1.82 16 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.49 9.04 -37.83 -0.34 -12.84 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.09 2.35 5.57 -106.80 -0.59 1.76 16 10 C -0.20 -4.92 9.74 -39.25 -0.38 -5.31 16 11 C -0.12 -2.74 9.92 -39.83 -0.40 -3.13 16 12 C -0.01 -0.15 6.71 -38.78 -0.26 -0.41 16 13 O -0.33 -6.86 10.07 -18.73 -0.19 -7.05 16 14 C 0.08 1.28 4.17 37.16 0.16 1.43 16 15 C -0.09 -1.20 3.15 -88.58 -0.28 -1.48 16 16 C -0.12 -1.44 6.24 -25.03 -0.16 -1.60 16 17 C -0.13 -1.26 6.80 -25.61 -0.17 -1.44 16 18 C -0.12 -1.16 6.80 -25.61 -0.17 -1.33 16 19 C -0.12 -1.28 6.27 -25.07 -0.16 -1.44 16 20 C -0.17 -4.20 8.96 -39.83 -0.36 -4.56 16 21 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 22 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 23 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 24 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 25 H 0.05 0.83 7.63 -51.93 -0.40 0.44 16 26 H 0.05 0.82 7.52 -51.93 -0.39 0.43 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.85 7.95 -51.93 -0.41 0.43 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.73 8.05 -51.92 -0.42 0.31 16 36 H 0.09 2.02 6.27 -52.49 -0.33 1.70 16 37 H 0.12 3.25 6.18 -52.49 -0.32 2.92 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -28.05 302.03 -9.23 -37.28 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.63 Total: 4.18 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -3.55 Total: -32.40 kcal Atomic # 7 Polarization: -21.00 SS G_CDS: 0.61 Total: -20.39 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.19 Total: -7.05 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.05 -9.23 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048022499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.394 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds