Wall clock time and date at job start Mon Mar 30 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48500 * 109.47280 * 274.65441 * 3 2 1 5 5 H 1.48501 * 109.47050 * 34.65554 * 3 2 1 6 6 H 1.48500 * 109.47387 * 154.65288 * 3 2 1 7 7 C 1.39890 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00346 * 162.15993 * 7 2 1 9 9 C 1.41221 * 120.00072 * 342.16784 * 7 2 1 10 10 C 1.40829 * 120.18262 * 155.14223 * 9 7 2 11 11 C 1.36432 * 119.81330 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18762 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.82168 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99951 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46863 * 179.97438 * 14 13 12 16 16 C 1.54968 * 110.92229 * 71.54227 * 15 14 13 17 17 C 1.54264 * 104.16342 * 156.29597 * 16 15 14 18 18 C 1.53886 * 106.63659 * 336.44233 * 17 16 15 19 19 C 1.54262 * 106.59748 * 359.97438 * 18 17 16 20 20 C 1.39315 * 120.36033 * 0.25894 * 12 11 10 21 21 C 1.36443 * 120.18607 * 359.48456 * 20 12 11 22 22 H 0.97000 * 119.99370 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.09045 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.90647 * 179.97438 * 11 10 9 25 25 H 1.08997 * 109.47134 * 59.99520 * 14 13 12 26 26 H 1.08999 * 109.46858 * 300.00021 * 14 13 12 27 27 H 1.08996 * 110.67489 * 308.23713 * 15 14 13 28 28 H 1.09002 * 110.47692 * 37.64049 * 16 15 14 29 29 H 1.08999 * 110.52887 * 274.97391 * 16 15 14 30 30 H 1.08997 * 110.03357 * 217.14035 * 17 16 15 31 31 H 1.09000 * 110.03792 * 95.75099 * 17 16 15 32 32 H 1.09001 * 110.02895 * 119.25810 * 18 17 16 33 33 H 1.09001 * 110.03298 * 240.64097 * 18 17 16 34 34 H 1.08998 * 110.48806 * 142.28470 * 19 18 17 35 35 H 1.09008 * 110.48494 * 264.79911 * 19 18 17 36 36 H 1.08002 * 119.90542 * 179.71994 * 20 12 11 37 37 H 1.07998 * 120.09449 * 180.25322 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3954 5 1 1.4930 2.6222 0.7961 6 1 3.5861 1.4138 0.5994 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3531 -2.4050 0.3756 10 6 1.8225 -3.6475 -0.0924 11 6 1.1835 -4.7958 0.2743 12 6 0.0699 -4.7416 1.1096 13 8 -0.5602 -5.8881 1.4691 14 6 -1.6960 -5.7625 2.3271 15 6 -2.2695 -7.1503 2.6205 16 6 -1.3336 -7.9477 3.5637 17 6 -2.2632 -8.9811 4.2327 18 6 -3.6883 -8.4053 4.1576 19 6 -3.5756 -7.0413 3.4460 20 6 -0.4038 -3.5162 1.5730 21 6 0.2269 -2.3590 1.2199 22 1 -0.4849 0.8401 -0.0004 23 1 2.6855 -3.6912 -0.7403 24 1 1.5420 -5.7495 -0.0841 25 1 -2.4551 -5.1521 1.8380 26 1 -1.3950 -5.2884 3.2613 27 1 -2.4422 -7.6989 1.6946 28 1 -0.8949 -7.2882 4.3125 29 1 -0.5531 -8.4503 2.9924 30 1 -1.9734 -9.1255 5.2735 31 1 -2.2148 -9.9291 3.6969 32 1 -4.3312 -9.0735 3.5845 33 1 -4.0903 -8.2712 5.1619 34 1 -4.4301 -6.8822 2.7884 35 1 -3.5018 -6.2351 4.1760 36 1 -1.2705 -3.4824 2.2165 37 1 -0.1391 -1.4101 1.5833 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048022499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:00 Heat of formation + Delta-G solvation = -58.592941 kcal Electronic energy + Delta-G solvation = -17101.233540 eV Core-core repulsion = 14420.720140 eV Total energy + Delta-G solvation = -2680.513400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64271 -39.10650 -37.80088 -35.22341 -31.87733 -31.51264 -30.57770 -29.55354 -26.87504 -25.63927 -23.04837 -22.30792 -21.09019 -20.87820 -19.27068 -18.56250 -17.33087 -16.88266 -16.41810 -16.07868 -15.77070 -15.42606 -14.74315 -14.38159 -14.23393 -14.11222 -13.67521 -13.54526 -13.22431 -12.78499 -12.69524 -12.33871 -12.13862 -12.01494 -11.97295 -11.94672 -11.64919 -11.59244 -11.32951 -11.23364 -11.16257 -10.85942 -9.57786 -8.90959 -8.60393 -6.22986 0.93357 1.03587 1.39638 1.49615 1.55846 2.22944 2.60220 2.72255 3.64043 3.69060 3.71015 3.89180 4.25187 4.27311 4.34088 4.41639 4.51539 4.56524 4.67283 4.70234 4.79373 4.85609 4.91927 5.00703 5.03463 5.13051 5.14816 5.23991 5.32798 5.36480 5.43939 5.51007 5.54067 5.66414 5.97391 6.05801 6.23127 6.56075 6.79695 6.94776 7.10163 8.36773 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.049992 B = 0.004147 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.955892 B = 6750.066844 C = 7104.855119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.205 4.205 11 C -0.122 4.122 12 C -0.002 4.002 13 O -0.333 6.333 14 C 0.069 3.931 15 C -0.089 4.089 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.177 4.177 21 C -0.155 4.155 22 H 0.287 0.713 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -10.382 7.256 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.531 4.531 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.224 4.224 11 C -0.141 4.141 12 C -0.045 4.045 13 O -0.249 6.249 14 C -0.006 4.006 15 C -0.108 4.108 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.196 4.196 21 C -0.175 4.175 22 H 0.097 0.903 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.415 -10.437 7.199 14.209 hybrid contribution 0.242 1.126 -0.165 1.163 sum -6.173 -9.311 7.033 13.201 Atomic orbital electron populations 1.69898 1.08998 1.30399 1.36646 1.26736 0.95478 1.04475 0.91288 0.85196 0.79173 0.76021 0.79319 1.18786 1.19114 1.18271 1.19728 0.98379 0.92431 1.42525 0.90538 1.17952 0.92745 0.93254 0.90804 1.20809 1.03727 0.92228 1.05649 1.19905 0.95739 0.98266 1.00173 1.18736 0.97292 0.84607 1.03914 1.85803 1.43845 1.29504 1.65790 1.22762 0.86434 0.98731 0.92665 1.22161 0.96065 0.93120 0.99408 1.22397 0.97706 0.97749 0.97787 1.22142 0.94599 0.98232 1.00975 1.22110 0.96879 0.95594 1.01074 1.22356 0.95614 0.98707 0.98606 1.20812 1.01785 0.92565 1.04454 1.20907 0.99352 0.96694 1.00534 0.90261 0.87119 0.86197 0.93388 0.93085 0.90190 0.92305 0.92316 0.91009 0.91258 0.90866 0.90583 0.90657 0.91272 0.86768 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.34 10.98 21.82 0.24 -44.10 16 2 C 0.03 1.74 5.13 85.23 0.44 2.18 16 3 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.56 9.04 23.40 0.21 -27.35 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.05 3.04 5.57 -21.28 -0.12 2.92 16 10 C -0.20 -10.39 9.74 22.48 0.22 -10.17 16 11 C -0.12 -5.78 9.92 22.11 0.22 -5.56 16 12 C 0.00 -0.07 6.71 22.79 0.15 0.08 16 13 O -0.33 -13.67 10.07 -89.93 -0.91 -14.57 16 14 C 0.07 2.26 4.17 71.98 0.30 2.56 16 15 C -0.09 -2.24 3.15 -9.47 -0.03 -2.27 16 16 C -0.12 -2.79 6.24 31.70 0.20 -2.59 16 17 C -0.12 -2.13 6.80 31.32 0.21 -1.92 16 18 C -0.12 -1.88 6.80 31.32 0.21 -1.67 16 19 C -0.12 -2.24 6.27 31.67 0.20 -2.04 16 20 C -0.18 -8.61 8.96 22.11 0.20 -8.41 16 21 C -0.16 -8.43 8.64 22.49 0.19 -8.24 16 22 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 23 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 24 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 25 H 0.05 1.58 7.63 -2.39 -0.02 1.56 16 26 H 0.05 1.65 7.52 -2.39 -0.02 1.63 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 1.45 7.95 -2.39 -0.02 1.43 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.33 8.05 -2.38 -0.02 1.31 16 36 H 0.11 4.92 6.27 -2.91 -0.02 4.90 16 37 H 0.11 5.94 6.18 -2.91 -0.02 5.92 16 Total: -1.00 -60.32 302.03 5.01 -55.32 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 1.04 Total: 25.10 kcal Atomic # 6 Polarization: -65.09 SS G_CDS: 2.61 Total: -62.48 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.24 Total: -44.10 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.91 Total: -14.57 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -60.32 5.01 -55.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048022499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.277 kcal (2) G-P(sol) polarization free energy of solvation -60.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds