Wall clock time and date at job start Mon Mar 30 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38411 * 119.82527 * 2 1 4 4 C 1.37882 * 120.17353 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.08743 * 180.02562 * 4 3 2 6 6 C 1.39850 * 119.82545 * 0.02562 * 4 3 2 7 7 C 1.47161 * 120.17322 * 180.02562 * 6 4 3 8 8 O 1.21264 * 119.99977 * 264.10839 * 7 6 4 9 9 C 1.50696 * 120.00080 * 84.38353 * 7 6 4 10 10 H 1.08995 * 109.47431 * 327.80333 * 9 7 6 11 11 C 1.53001 * 109.47239 * 87.80352 * 9 7 6 12 12 C 1.50700 * 109.47135 * 207.80013 * 9 7 6 13 13 H 1.08001 * 120.00055 * 0.02562 * 12 9 7 14 14 C 1.37885 * 120.00243 * 180.02562 * 12 9 7 15 15 N 1.31518 * 119.99500 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00149 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47049 * 90.00115 * 16 14 12 18 18 H 1.48499 * 109.46848 * 209.99963 * 16 14 12 19 19 H 1.48492 * 109.47155 * 329.99848 * 16 14 12 20 20 C 1.39853 * 119.65611 * 0.27670 * 6 4 3 21 21 C 1.50707 * 120.08873 * 179.69926 * 20 6 4 22 22 C 1.37888 * 119.82459 * 359.42662 * 20 6 4 23 23 H 1.09003 * 109.47003 * 90.00010 * 1 2 3 24 24 H 1.09002 * 109.46721 * 209.99906 * 1 2 3 25 25 H 1.08992 * 109.47112 * 329.99626 * 1 2 3 26 26 H 1.08002 * 119.90799 * 0.02699 * 3 2 1 27 27 H 1.08990 * 109.47035 * 264.61625 * 5 4 3 28 28 H 1.08997 * 109.46904 * 24.61642 * 5 4 3 29 29 H 1.08999 * 109.46916 * 144.60927 * 5 4 3 30 30 H 1.08999 * 109.46850 * 299.23315 * 11 9 7 31 31 H 1.09004 * 109.47172 * 59.23688 * 11 9 7 32 32 H 1.08996 * 109.47114 * 179.23590 * 11 9 7 33 33 H 0.96993 * 119.99584 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47373 * 94.28860 * 21 20 6 35 35 H 1.08999 * 109.47212 * 214.29349 * 21 20 6 36 36 H 1.09007 * 109.46748 * 334.28801 * 21 20 6 37 37 H 1.08000 * 119.91739 * 180.29629 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2008 0.0000 4 6 3.5742 1.2092 -0.0005 5 6 4.3218 2.5177 0.0001 6 6 4.2771 0.0001 -0.0016 7 6 5.7487 0.0002 -0.0016 8 8 6.3551 -0.1067 -1.0464 9 6 6.5023 0.1267 1.2973 10 1 5.9309 0.7444 1.9901 11 6 6.7094 -1.2624 1.9042 12 6 7.8419 0.7675 1.0405 13 1 8.1196 1.0548 0.0372 14 6 8.7130 0.9871 2.0866 15 7 8.3745 0.6377 3.3085 16 14 10.3731 1.7820 1.7684 17 1 10.2473 3.2567 1.8900 18 1 11.3582 1.2856 2.7626 19 1 10.8336 1.4356 0.3998 20 6 3.5743 -1.2089 -0.0080 21 6 4.3219 -2.5174 -0.0161 22 6 2.1954 -1.2007 -0.0012 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6511 2.1336 0.0004 27 1 4.5853 2.7860 -1.0229 28 1 3.6910 3.2963 0.4289 29 1 5.2297 2.4172 0.5948 30 1 5.7404 -1.7204 2.1025 31 1 7.2692 -1.8843 1.2056 32 1 7.2662 -1.1720 2.8368 33 1 8.9874 0.7918 4.0443 34 1 4.4362 -2.8769 1.0065 35 1 3.7646 -3.2508 -0.5989 36 1 5.3058 -2.3709 -0.4619 37 1 1.6512 -2.1335 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048259110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:01 Heat of formation + Delta-G solvation = -54.985823 kcal Electronic energy + Delta-G solvation = -17954.127183 eV Core-core repulsion = 15273.770199 eV Total energy + Delta-G solvation = -2680.356984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31199 -39.36529 -35.84349 -34.58003 -34.44135 -32.47353 -28.91220 -28.50646 -27.80709 -27.17734 -24.71137 -22.20108 -21.73236 -20.15439 -18.45418 -17.56053 -17.07150 -16.87795 -15.75548 -15.46259 -15.13311 -14.87182 -14.69512 -14.30303 -14.16523 -13.97594 -13.90674 -13.66336 -13.46065 -13.26435 -13.05463 -12.75146 -12.71281 -12.55284 -12.42534 -12.15658 -12.12817 -11.98462 -11.87101 -11.09694 -10.58157 -10.22589 -9.52715 -9.40839 -8.17670 -6.31777 0.22572 0.42258 1.14092 1.37852 1.39162 1.50908 2.38860 2.66683 3.09625 3.35044 3.80977 3.81919 3.93067 4.34371 4.43300 4.49048 4.54042 4.61856 4.65639 4.68631 4.69963 4.73617 4.87071 4.93181 4.93543 4.97511 5.01859 5.09488 5.31772 5.32734 5.42760 5.52414 5.58964 5.64406 5.66146 5.89549 6.07832 6.15701 6.70320 6.79555 7.36063 8.87274 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032286 B = 0.006481 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.034505 B = 4319.371004 C = 4645.879043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.131 4.131 4 C -0.065 4.065 5 C -0.124 4.124 6 C -0.183 4.183 7 C 0.425 3.575 8 O -0.498 6.498 9 C 0.004 3.996 10 H 0.033 0.967 11 C -0.116 4.116 12 C -0.533 4.533 13 H 0.044 0.956 14 C 0.022 3.978 15 N -0.909 5.909 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.278 1.278 20 C -0.064 4.064 21 C -0.121 4.121 22 C -0.130 4.130 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.038 0.962 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.021 -1.816 -3.465 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C -0.148 4.148 4 C -0.066 4.066 5 C -0.181 4.181 6 C -0.184 4.184 7 C 0.304 3.696 8 O -0.374 6.374 9 C -0.015 4.015 10 H 0.051 0.949 11 C -0.174 4.174 12 C -0.571 4.571 13 H 0.063 0.937 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.780 3.220 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.203 1.203 20 C -0.064 4.064 21 C -0.177 4.177 22 C -0.147 4.147 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.169 0.831 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.631 -1.873 -3.823 16.200 hybrid contribution 1.495 0.483 0.016 1.571 sum -14.135 -1.390 -3.807 14.705 Atomic orbital electron populations 1.20855 0.88032 1.04138 1.03463 1.20448 0.98065 0.92206 0.96463 1.21104 0.91811 0.99455 1.02476 1.20101 0.94958 0.93537 0.97969 1.20915 1.00221 0.94533 1.02390 1.20600 0.94619 0.95550 1.07616 1.23264 0.88580 0.66791 0.90974 1.90361 1.72589 1.38014 1.36456 1.19140 0.95081 0.96255 0.90986 0.94903 1.21530 0.99448 0.94604 1.01789 1.21206 1.01412 1.40478 0.93972 0.93737 1.25624 1.01598 0.95791 0.94712 1.69960 1.37624 1.47558 0.99642 0.85600 0.79513 0.79014 0.77857 1.19545 1.19888 1.20281 1.20099 0.94895 0.93493 0.97887 1.20960 0.99184 0.94186 1.03417 1.21095 0.91879 0.99383 1.02389 0.89814 0.90075 0.90263 0.83078 0.91208 0.88283 0.93301 0.93711 0.95708 0.90807 0.92448 0.89787 0.88295 0.94278 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.00 71.24 0.71 -0.85 16 2 C -0.07 -1.69 5.89 -19.78 -0.12 -1.81 16 3 C -0.13 -3.52 9.31 22.23 0.21 -3.31 16 4 C -0.07 -2.30 5.92 -19.56 -0.12 -2.42 16 5 C -0.12 -4.26 9.53 71.24 0.68 -3.58 16 6 C -0.18 -7.39 5.54 -20.15 -0.11 -7.50 16 7 C 0.43 20.74 2.87 28.03 0.08 20.82 16 8 O -0.50 -27.16 16.44 -2.98 -0.05 -27.20 16 9 C 0.00 0.23 2.11 -12.29 -0.03 0.20 16 10 H 0.03 1.83 7.84 -2.39 -0.02 1.81 16 11 C -0.12 -5.73 8.68 71.98 0.62 -5.10 16 12 C -0.53 -31.24 8.33 25.60 0.21 -31.03 16 13 H 0.04 2.74 7.09 -2.91 -0.02 2.72 16 14 C 0.02 1.27 5.30 84.66 0.45 1.71 16 15 N -0.91 -51.96 11.31 21.45 0.24 -51.72 16 16 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 C -0.06 -2.14 5.92 -19.55 -0.12 -2.25 16 21 C -0.12 -3.74 8.90 71.24 0.63 -3.10 16 22 C -0.13 -3.36 9.35 22.23 0.21 -3.15 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 25 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 26 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.10 2.63 8.05 -2.39 -0.02 2.61 16 29 H 0.05 2.02 6.64 -2.39 -0.02 2.01 16 30 H 0.04 1.89 6.52 -2.39 -0.02 1.88 16 31 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 3.94 6.05 -2.39 -0.01 3.93 16 33 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.08 2.43 7.09 -2.39 -0.02 2.41 16 35 H 0.10 2.32 8.12 -2.39 -0.02 2.30 16 36 H 0.04 1.44 6.78 -2.38 -0.02 1.43 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -68.59 305.46 6.59 -62.00 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.05 Total: 11.37 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 3.32 Total: -41.37 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.24 Total: -51.72 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.20 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.59 6.59 -62.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.012 kcal (2) G-P(sol) polarization free energy of solvation -68.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds