Wall clock time and date at job start Mon Mar 30 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46968 * 2 1 4 4 C 1.37906 * 120.08808 * 100.56099 * 3 2 1 5 5 C 1.38383 * 120.16931 * 180.27852 * 4 3 2 6 6 C 1.38425 * 120.35058 * 359.69342 * 5 4 3 7 7 C 1.37863 * 120.17307 * 0.02562 * 6 5 4 8 8 C 1.39836 * 120.08733 * 280.26010 * 3 2 1 9 9 C 1.47168 * 120.17148 * 0.02562 * 8 3 2 10 10 O 1.21256 * 119.99937 * 353.15870 * 9 8 3 11 11 C 1.50697 * 120.00113 * 173.15295 * 9 8 3 12 12 H 1.09002 * 109.46844 * 35.00637 * 11 9 8 13 13 C 1.50699 * 109.47057 * 155.00285 * 11 9 8 14 14 H 1.07993 * 120.00130 * 95.15821 * 13 11 9 15 15 C 1.37877 * 119.99926 * 275.15416 * 13 11 9 16 16 N 1.31520 * 120.00135 * 355.19717 * 15 13 11 17 17 Si 1.86803 * 119.99964 * 175.19727 * 15 13 11 18 18 H 1.48506 * 109.46751 * 90.00281 * 17 15 13 19 19 H 1.48505 * 109.47081 * 209.99990 * 17 15 13 20 20 H 1.48498 * 109.47085 * 330.00271 * 17 15 13 21 21 C 1.52994 * 109.47222 * 275.00257 * 11 9 8 22 22 C 1.52999 * 109.47288 * 65.89418 * 21 11 9 23 23 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47499 * 300.00527 * 1 2 3 25 25 H 1.09000 * 109.46935 * 60.00329 * 1 2 3 26 26 H 1.09003 * 109.47470 * 240.00009 * 2 1 3 27 27 H 1.09000 * 109.46935 * 119.99671 * 2 1 3 28 28 H 1.07998 * 119.91407 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.82361 * 179.72052 * 5 4 3 30 30 H 1.07996 * 119.91190 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.09003 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99528 * 5.19995 * 16 15 13 33 33 H 1.09004 * 109.47108 * 185.88609 * 21 11 9 34 34 H 1.08996 * 109.47611 * 305.89401 * 21 11 9 35 35 H 1.09001 * 109.47250 * 59.99445 * 22 21 11 36 36 H 1.09000 * 109.47845 * 179.97438 * 22 21 11 37 37 H 1.09007 * 109.46874 * 299.99765 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4689 1.9998 1.1730 5 6 2.9251 3.3063 1.1760 6 6 2.9531 4.0401 0.0026 7 6 2.5254 3.4736 -1.1792 8 6 2.0628 2.1537 -1.1906 9 6 1.6043 1.5414 -2.4479 10 8 1.3164 0.3639 -2.4791 11 6 1.4926 2.3778 -3.6965 12 1 2.2899 3.1210 -3.7084 13 6 1.6150 1.4903 -4.9082 14 1 0.7268 1.1139 -5.3938 15 6 2.8609 1.1588 -5.3970 16 7 3.9391 1.6920 -4.8651 17 14 3.0174 -0.0474 -6.8148 18 1 2.9838 0.6938 -8.1012 19 1 4.3030 -0.7819 -6.7001 20 1 1.8900 -1.0128 -6.7701 21 6 0.1359 3.0847 -3.7170 22 6 0.0695 4.0945 -2.5695 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4502 1.4337 2.0926 29 1 3.2615 3.7556 2.0987 30 1 3.3109 5.0590 0.0130 31 1 2.5474 4.0475 -2.0939 32 1 3.8638 2.2588 -4.0816 33 1 0.0119 3.6054 -4.6666 34 1 -0.6593 2.3486 -3.5996 35 1 0.8647 4.8307 -2.6868 36 1 -0.8968 4.5985 -2.5843 37 1 0.1936 3.5739 -1.6198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052201228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:16 Heat of formation + Delta-G solvation = -31.625871 kcal Electronic energy + Delta-G solvation = -18451.870708 eV Core-core repulsion = 15772.526688 eV Total energy + Delta-G solvation = -2679.344020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83685 -37.44741 -34.87975 -33.34612 -32.23674 -30.60886 -29.14438 -27.39495 -24.43133 -23.25368 -22.77238 -21.79191 -20.13458 -18.82855 -16.73478 -16.40578 -15.32290 -15.14182 -14.60528 -14.00107 -13.72805 -13.60950 -13.41594 -13.11694 -12.79733 -12.68558 -12.47154 -12.10533 -11.82935 -11.47712 -11.28667 -10.99140 -10.86303 -10.78125 -10.70302 -10.47822 -10.26986 -10.10398 -9.54674 -8.87239 -8.50277 -8.41202 -8.36361 -8.04262 -6.40403 -4.11302 1.25252 1.68818 3.32383 3.43732 3.50625 3.65376 4.27618 4.51779 4.93452 5.04037 5.13137 5.26314 5.41055 5.51507 5.64019 5.70952 5.80042 5.81140 5.86414 5.88085 5.97910 6.18571 6.21492 6.31141 6.43814 6.50545 6.56012 6.57972 6.63259 6.69149 6.70622 6.74630 6.99097 7.15627 7.22201 7.31420 8.04244 8.39169 8.77075 8.85518 9.58309 10.98050 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.008268 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.823269 B = 3385.731982 C = 3601.721751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C -0.035 4.035 4 C -0.141 4.141 5 C -0.102 4.102 6 C -0.146 4.146 7 C -0.067 4.067 8 C -0.153 4.153 9 C 0.391 3.609 10 O -0.444 6.444 11 C -0.011 4.011 12 H 0.056 0.944 13 C -0.576 4.576 14 H 0.054 0.946 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 1.071 2.929 18 H -0.287 1.287 19 H -0.285 1.285 20 H -0.287 1.287 21 C -0.098 4.098 22 C -0.161 4.161 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.266 0.734 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 3.684 10.475 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 C -0.035 4.035 4 C -0.159 4.159 5 C -0.120 4.120 6 C -0.164 4.164 7 C -0.085 4.085 8 C -0.154 4.154 9 C 0.267 3.733 10 O -0.319 6.319 11 C -0.030 4.030 12 H 0.074 0.926 13 C -0.613 4.613 14 H 0.073 0.927 15 C -0.182 4.182 16 N -0.545 5.545 17 Si 0.900 3.100 18 H -0.214 1.214 19 H -0.210 1.210 20 H -0.213 1.213 21 C -0.136 4.136 22 C -0.218 4.218 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.941 2.341 9.427 10.149 hybrid contribution -0.910 0.905 1.252 1.793 sum -3.851 3.246 10.679 11.807 Atomic orbital electron populations 1.21572 0.94808 1.01361 1.01264 1.20847 0.96500 0.92545 1.03618 1.20290 0.94857 0.96070 0.92269 1.20961 1.01855 0.95589 0.97448 1.21209 0.98532 0.94360 0.97916 1.21055 1.02305 1.00158 0.92851 1.21667 0.94315 0.94062 0.98443 1.21109 1.03042 0.95165 0.96072 1.23767 0.71820 0.89344 0.88338 1.90259 1.37440 1.17851 1.86312 1.19390 0.94987 0.96051 0.92588 0.92615 1.21710 0.95170 1.32417 1.12043 0.92720 1.25876 0.92162 0.98020 1.02183 1.70820 1.30683 1.30560 1.22421 0.83509 0.75802 0.75932 0.74798 1.21395 1.21021 1.21250 1.21348 0.97661 0.96938 0.97619 1.22163 1.00456 0.99498 0.99719 0.92741 0.93857 0.92227 0.87599 0.92476 0.86328 0.86394 0.86093 0.84846 0.92245 0.91758 0.93144 0.92906 0.93825 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.47 37.16 0.35 -1.80 16 2 C -0.10 -1.71 5.34 -27.88 -0.15 -1.86 16 3 C -0.03 -0.62 5.18 -104.14 -0.54 -1.16 16 4 C -0.14 -2.11 9.65 -39.65 -0.38 -2.49 16 5 C -0.10 -1.40 10.04 -39.46 -0.40 -1.80 16 6 C -0.15 -2.14 10.03 -39.65 -0.40 -2.54 16 7 C -0.07 -1.18 7.25 -39.11 -0.28 -1.46 16 8 C -0.15 -3.05 4.70 -105.06 -0.49 -3.55 16 9 C 0.39 9.16 5.49 -30.69 -0.17 9.00 16 10 O -0.44 -11.32 11.92 5.58 0.07 -11.25 16 11 C -0.01 -0.26 1.48 -92.93 -0.14 -0.40 16 12 H 0.06 1.38 5.03 -51.93 -0.26 1.12 16 13 C -0.58 -16.06 7.69 -34.44 -0.26 -16.33 16 14 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 16 N -0.91 -27.13 13.63 55.43 0.76 -26.38 16 17 Si 1.07 25.78 29.91 -169.99 -5.08 20.70 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.10 -2.00 5.36 -26.73 -0.14 -2.14 16 22 C -0.16 -2.70 8.34 37.16 0.31 -2.39 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.10 6.71 -51.93 -0.35 0.75 16 26 H 0.11 2.18 5.76 -51.93 -0.30 1.88 16 27 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 28 H 0.12 1.48 8.03 -52.49 -0.42 1.06 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.13 2.34 4.87 -52.49 -0.26 2.09 16 32 H 0.27 7.81 6.66 -40.82 -0.27 7.54 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.83 6.87 -51.93 -0.36 0.47 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.93 5.47 -51.93 -0.28 0.64 16 LS Contribution 294.29 15.07 4.43 4.43 Total: -1.00 -30.88 294.29 -7.70 -38.58 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.08 Total: 2.32 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -2.79 Total: -28.40 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.76 Total: -26.38 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.25 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.88 -7.70 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052201228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.954 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds