Wall clock time and date at job start Mon Mar 30 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46968 * 2 1 4 4 C 1.37906 * 120.08808 * 100.56099 * 3 2 1 5 5 C 1.38383 * 120.16931 * 180.27852 * 4 3 2 6 6 C 1.38425 * 120.35058 * 359.69342 * 5 4 3 7 7 C 1.37863 * 120.17307 * 0.02562 * 6 5 4 8 8 C 1.39836 * 120.08733 * 280.26010 * 3 2 1 9 9 C 1.47168 * 120.17148 * 0.02562 * 8 3 2 10 10 O 1.21256 * 119.99937 * 353.15870 * 9 8 3 11 11 C 1.50697 * 120.00113 * 173.15295 * 9 8 3 12 12 H 1.09002 * 109.46844 * 35.00637 * 11 9 8 13 13 C 1.50699 * 109.47057 * 155.00285 * 11 9 8 14 14 H 1.07993 * 120.00130 * 95.15821 * 13 11 9 15 15 C 1.37877 * 119.99926 * 275.15416 * 13 11 9 16 16 N 1.31520 * 120.00135 * 355.19717 * 15 13 11 17 17 Si 1.86803 * 119.99964 * 175.19727 * 15 13 11 18 18 H 1.48506 * 109.46751 * 90.00281 * 17 15 13 19 19 H 1.48505 * 109.47081 * 209.99990 * 17 15 13 20 20 H 1.48498 * 109.47085 * 330.00271 * 17 15 13 21 21 C 1.52994 * 109.47222 * 275.00257 * 11 9 8 22 22 C 1.52999 * 109.47288 * 65.89418 * 21 11 9 23 23 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47499 * 300.00527 * 1 2 3 25 25 H 1.09000 * 109.46935 * 60.00329 * 1 2 3 26 26 H 1.09003 * 109.47470 * 240.00009 * 2 1 3 27 27 H 1.09000 * 109.46935 * 119.99671 * 2 1 3 28 28 H 1.07998 * 119.91407 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.82361 * 179.72052 * 5 4 3 30 30 H 1.07996 * 119.91190 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.09003 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99528 * 5.19995 * 16 15 13 33 33 H 1.09004 * 109.47108 * 185.88609 * 21 11 9 34 34 H 1.08996 * 109.47611 * 305.89401 * 21 11 9 35 35 H 1.09001 * 109.47250 * 59.99445 * 22 21 11 36 36 H 1.09000 * 109.47845 * 179.97438 * 22 21 11 37 37 H 1.09007 * 109.46874 * 299.99765 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4689 1.9998 1.1730 5 6 2.9251 3.3063 1.1760 6 6 2.9531 4.0401 0.0026 7 6 2.5254 3.4736 -1.1792 8 6 2.0628 2.1537 -1.1906 9 6 1.6043 1.5414 -2.4479 10 8 1.3164 0.3639 -2.4791 11 6 1.4926 2.3778 -3.6965 12 1 2.2899 3.1210 -3.7084 13 6 1.6150 1.4903 -4.9082 14 1 0.7268 1.1139 -5.3938 15 6 2.8609 1.1588 -5.3970 16 7 3.9391 1.6920 -4.8651 17 14 3.0174 -0.0474 -6.8148 18 1 2.9838 0.6938 -8.1012 19 1 4.3030 -0.7819 -6.7001 20 1 1.8900 -1.0128 -6.7701 21 6 0.1359 3.0847 -3.7170 22 6 0.0695 4.0945 -2.5695 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4502 1.4337 2.0926 29 1 3.2615 3.7556 2.0987 30 1 3.3109 5.0590 0.0130 31 1 2.5474 4.0475 -2.0939 32 1 3.8638 2.2588 -4.0816 33 1 0.0119 3.6054 -4.6666 34 1 -0.6593 2.3486 -3.5996 35 1 0.8647 4.8307 -2.6868 36 1 -0.8968 4.5985 -2.5843 37 1 0.1936 3.5739 -1.6198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052201228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:15 Heat of formation + Delta-G solvation = -48.174329 kcal Electronic energy + Delta-G solvation = -18452.588303 eV Core-core repulsion = 15772.526688 eV Total energy + Delta-G solvation = -2680.061615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34242 -38.99484 -36.63127 -34.77503 -34.15884 -31.95429 -30.42105 -29.18744 -26.14122 -24.88948 -24.18214 -23.29539 -21.51584 -20.54347 -18.75500 -17.87054 -16.68426 -16.54015 -16.23647 -15.72130 -15.41004 -15.28316 -14.77107 -14.69310 -14.28513 -14.19642 -14.03234 -13.68345 -13.08722 -12.99921 -12.70413 -12.63013 -12.58626 -12.37926 -12.17422 -12.02987 -11.83591 -11.70301 -11.32917 -10.92616 -10.49688 -9.89335 -9.76959 -9.62679 -8.66807 -6.36650 -0.11991 0.45709 1.45968 1.56570 1.73725 1.76945 2.50982 2.91125 3.07640 3.57209 3.81826 3.89283 4.11555 4.24037 4.27108 4.30508 4.38439 4.46582 4.50705 4.58119 4.61302 4.77825 4.86568 4.93138 5.01772 5.05950 5.08172 5.09944 5.21441 5.30390 5.41295 5.43355 5.47503 5.52334 5.73306 5.97628 6.05294 6.13483 6.57984 7.04876 7.38769 8.72891 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.008268 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.823269 B = 3385.731982 C = 3601.721751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.141 4.141 7 C -0.078 4.078 8 C -0.187 4.187 9 C 0.389 3.611 10 O -0.482 6.482 11 C -0.020 4.020 12 H 0.046 0.954 13 C -0.589 4.589 14 H 0.039 0.961 15 C -0.027 4.027 16 N -0.933 5.933 17 Si 1.109 2.891 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.281 1.281 21 C -0.094 4.094 22 C -0.149 4.149 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.026 0.974 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.124 0.876 32 H 0.258 0.742 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 4.978 13.068 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 C -0.050 4.050 4 C -0.156 4.156 5 C -0.102 4.102 6 C -0.159 4.159 7 C -0.096 4.096 8 C -0.188 4.188 9 C 0.268 3.732 10 O -0.359 6.359 11 C -0.039 4.039 12 H 0.064 0.936 13 C -0.627 4.627 14 H 0.058 0.942 15 C -0.225 4.225 16 N -0.571 5.571 17 Si 0.932 3.068 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.207 1.207 21 C -0.131 4.131 22 C -0.206 4.206 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.181 0.819 30 H 0.172 0.828 31 H 0.142 0.858 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.776 3.668 12.022 12.872 hybrid contribution -0.983 0.557 0.538 1.251 sum -3.759 4.224 12.560 13.774 Atomic orbital electron populations 1.21511 0.94196 1.01864 1.00749 1.20787 0.97119 0.92623 1.02948 1.20461 0.95589 0.96156 0.92810 1.21337 1.00482 0.96470 0.97263 1.21753 0.95754 0.93497 0.99149 1.21449 1.00873 1.01687 0.91881 1.21693 0.95059 0.93209 0.99656 1.20790 1.06281 0.96633 0.95064 1.23720 0.71071 0.88634 0.89733 1.90247 1.39499 1.18985 1.87187 1.19433 0.96566 0.95676 0.92214 0.93621 1.22056 0.94587 1.32616 1.13462 0.94228 1.27126 0.92120 0.99005 1.04295 1.70914 1.31186 1.31997 1.22979 0.83030 0.75796 0.74534 0.73464 1.18908 1.20996 1.20654 1.21268 0.95119 0.97361 0.99393 1.22037 1.02392 0.98572 0.97578 0.91794 0.91366 0.95495 0.91718 0.89489 0.83041 0.81859 0.82766 0.85838 0.93183 0.91915 0.94388 0.91800 0.91155 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.47 71.98 0.68 -3.37 16 2 C -0.10 -3.38 5.34 29.85 0.16 -3.22 16 3 C -0.05 -1.74 5.18 -19.55 -0.10 -1.84 16 4 C -0.14 -3.59 9.65 22.23 0.21 -3.37 16 5 C -0.08 -1.87 10.04 22.35 0.22 -1.65 16 6 C -0.14 -3.62 10.03 22.23 0.22 -3.40 16 7 C -0.08 -2.68 7.25 22.58 0.16 -2.52 16 8 C -0.19 -7.53 4.70 -20.15 -0.09 -7.62 16 9 C 0.39 19.12 5.49 28.03 0.15 19.27 16 10 O -0.48 -26.12 11.92 -2.96 -0.04 -26.15 16 11 C -0.02 -0.99 1.48 -12.29 -0.02 -1.01 16 12 H 0.05 2.39 5.03 -2.39 -0.01 2.38 16 13 C -0.59 -34.44 7.69 25.60 0.20 -34.25 16 14 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 15 C -0.03 -1.60 5.45 84.65 0.46 -1.14 16 16 N -0.93 -57.61 13.63 21.45 0.29 -57.32 16 17 Si 1.11 53.14 29.91 68.60 2.05 55.19 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 C -0.09 -3.95 5.36 30.59 0.16 -3.78 16 22 C -0.15 -4.90 8.34 71.98 0.60 -4.29 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.03 1.01 6.71 -2.39 -0.02 1.00 16 26 H 0.06 2.79 5.76 -2.39 -0.01 2.78 16 27 H 0.09 2.40 8.00 -2.39 -0.02 2.38 16 28 H 0.15 2.94 8.03 -2.91 -0.02 2.91 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.12 4.37 4.87 -2.91 -0.01 4.36 16 32 H 0.26 15.81 6.66 -92.71 -0.62 15.19 16 33 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.94 6.87 -2.39 -0.02 1.93 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.71 5.47 -2.38 -0.01 1.69 16 Total: -1.00 -71.20 294.29 6.55 -64.66 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.21 Total: 15.82 kcal Atomic # 6 Polarization: -55.22 SS G_CDS: 3.03 Total: -52.19 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.29 Total: -57.32 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 2.05 Total: 55.19 kcal Total: -71.20 6.55 -64.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052201228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.483 kcal (2) G-P(sol) polarization free energy of solvation -71.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds