Wall clock time and date at job start Mon Mar 30 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38282 * 119.88417 * 2 1 4 4 C 1.38392 * 120.07496 * 179.63985 * 3 2 1 5 5 C 1.38030 * 119.63623 * 0.08871 * 4 3 2 6 6 C 1.37941 * 120.54032 * 0.60779 * 5 4 3 7 7 C 1.38166 * 119.88482 * 180.02562 * 2 1 3 8 8 C 1.50705 * 120.16406 * 359.92434 * 7 2 1 9 9 O 1.36147 * 120.35954 * 177.48377 * 6 5 4 10 10 C 1.43142 * 115.60244 * 289.68321 * 9 6 5 11 11 C 1.51430 * 110.94273 * 86.74847 * 10 9 6 12 12 C 1.52138 * 113.45922 * 294.54893 * 11 10 9 13 13 C 1.51651 * 120.00992 * 180.78335 * 5 4 3 14 14 H 1.09006 * 109.60000 * 8.47990 * 13 5 4 15 15 C 1.50695 * 109.60396 * 128.79908 * 13 5 4 16 16 H 1.08001 * 120.00041 * 24.78857 * 15 13 5 17 17 C 1.37880 * 120.00171 * 204.80164 * 15 13 5 18 18 N 1.31512 * 119.99765 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00006 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46979 * 89.99802 * 19 17 15 21 21 H 1.48494 * 109.47004 * 329.99219 * 19 17 15 22 22 H 1.48502 * 109.46659 * 209.99566 * 19 17 15 23 23 H 1.08999 * 109.47141 * 90.00061 * 1 2 3 24 24 H 1.09001 * 109.47402 * 209.99440 * 1 2 3 25 25 H 1.08990 * 109.47458 * 329.99917 * 1 2 3 26 26 H 1.08004 * 119.96383 * 359.62250 * 3 2 1 27 27 H 1.07998 * 120.18140 * 180.02562 * 4 3 2 28 28 H 1.08993 * 109.47328 * 89.99883 * 8 7 2 29 29 H 1.09001 * 109.46720 * 210.00737 * 8 7 2 30 30 H 1.08996 * 109.46787 * 329.99725 * 8 7 2 31 31 H 1.09007 * 109.18228 * 207.12784 * 10 9 6 32 32 H 1.09000 * 109.18460 * 326.42063 * 10 9 6 33 33 H 1.09000 * 108.68468 * 55.57848 * 11 10 9 34 34 H 1.09003 * 108.68422 * 173.65352 * 11 10 9 35 35 H 1.09008 * 109.21300 * 307.19758 * 12 11 10 36 36 H 1.08996 * 109.21318 * 187.87777 * 12 11 10 37 37 H 0.97006 * 120.00376 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1989 0.0000 4 6 3.5798 1.2036 0.0075 5 6 4.2664 0.0061 0.0132 6 6 3.5845 -1.1929 -0.0013 7 6 2.1954 -1.1979 -0.0005 8 6 1.4430 -2.5037 0.0006 9 8 4.2651 -2.3711 -0.0472 10 6 4.9222 -2.6579 -1.2861 11 6 6.3060 -2.0439 -1.3198 12 6 6.2941 -0.5226 -1.3027 13 6 5.7826 0.0013 0.0394 14 1 6.1488 1.0150 0.2025 15 6 6.2663 -0.8956 1.1496 16 1 5.6387 -1.6985 1.5074 17 6 7.5098 -0.6912 1.7089 18 7 8.2741 0.2863 1.2730 19 14 8.1090 -1.8025 3.0856 20 1 8.8345 -2.9613 2.5060 21 1 6.9461 -2.2888 3.8707 22 1 9.0227 -1.0407 3.9745 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.6535 2.1328 -0.0062 27 1 4.1197 2.1389 0.0080 28 1 1.2604 -2.8188 -1.0267 29 1 2.0333 -3.2627 0.5140 30 1 0.4911 -2.3741 0.5155 31 1 5.0066 -3.7382 -1.4051 32 1 4.3311 -2.2524 -2.1073 33 1 6.8665 -2.3985 -0.4548 34 1 6.8140 -2.3772 -2.2248 35 1 5.6454 -0.1600 -2.1001 36 1 7.3063 -0.1541 -1.4693 37 1 7.9629 0.8637 0.5583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062571898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:34 Heat of formation + Delta-G solvation = -32.637427 kcal Electronic energy + Delta-G solvation = -18652.540750 eV Core-core repulsion = 15973.152866 eV Total energy + Delta-G solvation = -2679.387885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01169 -37.20679 -35.20245 -32.64074 -31.97291 -30.85184 -28.54734 -26.36518 -25.61654 -24.62761 -22.92616 -20.95222 -20.04205 -19.27153 -17.02703 -16.28638 -15.86552 -14.79864 -14.51834 -13.72380 -13.71403 -13.67175 -13.50945 -13.03104 -12.73494 -12.53794 -12.42040 -11.98741 -11.95221 -11.61586 -11.33078 -10.92522 -10.84394 -10.72853 -10.62755 -10.08525 -10.03521 -9.74342 -9.39937 -9.07565 -8.49106 -8.29506 -7.89620 -7.53874 -6.27807 -3.94130 1.86425 1.99067 3.47067 3.51454 3.67738 4.08946 4.56949 4.65362 5.22425 5.32246 5.41180 5.46899 5.54812 5.63158 5.70275 5.72669 5.81126 5.90403 5.92771 6.00049 6.05717 6.12018 6.21323 6.29894 6.41191 6.52846 6.58741 6.71940 6.93454 7.03039 7.08447 7.13294 7.28879 7.32409 7.51682 7.59474 8.24932 8.34959 8.64432 8.96849 9.72502 11.10376 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.008302 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.858046 B = 3371.755912 C = 3505.256681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.130 4.130 4 C -0.120 4.120 5 C -0.065 4.065 6 C 0.112 3.888 7 C -0.111 4.111 8 C -0.105 4.105 9 O -0.311 6.311 10 C 0.080 3.920 11 C -0.139 4.139 12 C -0.103 4.103 13 C 0.062 3.938 14 H 0.039 0.961 15 C -0.567 4.567 16 H 0.067 0.933 17 C 0.016 3.984 18 N -0.918 5.918 19 Si 1.067 2.933 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.287 1.287 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.052 0.948 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 -2.689 -5.086 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.066 4.066 6 C 0.068 3.932 7 C -0.112 4.112 8 C -0.162 4.162 9 O -0.227 6.227 10 C 0.005 3.995 11 C -0.177 4.177 12 C -0.141 4.141 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.605 4.605 16 H 0.085 0.915 17 C -0.187 4.187 18 N -0.555 5.555 19 Si 0.896 3.104 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.213 1.213 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.245 -3.121 -3.917 11.403 hybrid contribution -1.119 0.592 -1.217 1.756 sum -11.364 -2.529 -5.134 12.724 Atomic orbital electron populations 1.20733 0.91911 1.02182 1.01531 1.19382 0.95236 0.92302 1.03515 1.20879 0.94184 0.96766 1.03010 1.20944 0.93602 0.97570 1.01749 1.20884 0.99063 0.91755 0.94877 1.18188 0.88717 0.85869 1.00441 1.19851 0.92635 0.95112 1.03597 1.20634 0.99286 0.94777 1.01454 1.86242 1.66863 1.34922 1.34706 1.22300 0.93495 0.99116 0.84554 1.21543 0.96939 0.97142 1.02051 1.21419 0.99710 0.94989 0.97966 1.18261 0.85373 0.98118 0.93945 0.94292 1.22030 1.03878 1.15869 1.18770 0.91450 1.25759 0.93841 0.98523 1.00585 1.70787 1.38840 1.17226 1.28683 0.83564 0.75602 0.75349 0.75909 1.21589 1.21449 1.21261 0.91961 0.91619 0.92182 0.86950 0.86543 0.92173 0.91178 0.91911 0.90059 0.94555 0.88678 0.93875 0.95735 0.92894 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.60 36.00 0.35 -0.98 16 2 C -0.10 -1.73 5.88 -104.63 -0.61 -2.35 16 3 C -0.13 -2.24 9.70 -39.51 -0.38 -2.62 16 4 C -0.12 -2.40 9.70 -39.60 -0.38 -2.78 16 5 C -0.07 -1.46 4.64 -104.34 -0.48 -1.95 16 6 C 0.11 2.38 5.21 -39.44 -0.21 2.18 16 7 C -0.11 -2.03 5.90 -104.40 -0.62 -2.65 16 8 C -0.11 -1.56 9.37 36.01 0.34 -1.22 16 9 O -0.31 -6.71 7.22 -20.21 -0.15 -6.86 16 10 C 0.08 1.50 6.48 36.36 0.24 1.73 16 11 C -0.14 -2.87 5.29 -27.96 -0.15 -3.02 16 12 C -0.10 -2.30 5.43 -27.23 -0.15 -2.45 16 13 C 0.06 1.53 2.09 -92.52 -0.19 1.34 16 14 H 0.04 1.04 6.56 -51.93 -0.34 0.70 16 15 C -0.57 -15.49 5.56 -34.44 -0.19 -15.69 16 16 H 0.07 1.92 6.02 -52.49 -0.32 1.61 16 17 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 18 N -0.92 -27.22 13.63 55.43 0.76 -26.47 16 19 Si 1.07 25.61 29.90 -169.99 -5.08 20.53 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.75 5.95 -51.93 -0.31 0.44 16 25 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 27 H 0.12 2.18 7.99 -52.49 -0.42 1.76 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.09 7.57 -51.93 -0.39 0.70 16 30 H 0.06 0.79 5.96 -51.93 -0.31 0.48 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 33 H 0.09 2.24 6.51 -51.93 -0.34 1.90 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.50 7.90 -51.92 -0.41 0.09 16 36 H 0.05 1.23 8.00 -51.93 -0.42 0.82 16 37 H 0.27 7.86 6.53 -40.82 -0.27 7.59 16 LS Contribution 287.95 15.07 4.34 4.34 Total: -1.00 -30.14 287.95 -7.94 -38.08 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.26 Total: 0.48 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -2.55 Total: -30.09 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.76 Total: -26.47 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.15 Total: -6.86 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.14 -7.94 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.439 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds