Wall clock time and date at job start Mon Mar 30 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38282 * 119.88417 * 2 1 4 4 C 1.38392 * 120.07496 * 179.63985 * 3 2 1 5 5 C 1.38030 * 119.63623 * 0.08871 * 4 3 2 6 6 C 1.37941 * 120.54032 * 0.60779 * 5 4 3 7 7 C 1.38166 * 119.88482 * 180.02562 * 2 1 3 8 8 C 1.50705 * 120.16406 * 359.92434 * 7 2 1 9 9 O 1.36147 * 120.35954 * 177.48377 * 6 5 4 10 10 C 1.43142 * 115.60244 * 289.68321 * 9 6 5 11 11 C 1.51430 * 110.94273 * 86.74847 * 10 9 6 12 12 C 1.52138 * 113.45922 * 294.54893 * 11 10 9 13 13 C 1.51651 * 120.00992 * 180.78335 * 5 4 3 14 14 H 1.09006 * 109.60000 * 8.47990 * 13 5 4 15 15 C 1.50695 * 109.60396 * 128.79908 * 13 5 4 16 16 H 1.08001 * 120.00041 * 24.78857 * 15 13 5 17 17 C 1.37880 * 120.00171 * 204.80164 * 15 13 5 18 18 N 1.31512 * 119.99765 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00006 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46979 * 89.99802 * 19 17 15 21 21 H 1.48494 * 109.47004 * 329.99219 * 19 17 15 22 22 H 1.48502 * 109.46659 * 209.99566 * 19 17 15 23 23 H 1.08999 * 109.47141 * 90.00061 * 1 2 3 24 24 H 1.09001 * 109.47402 * 209.99440 * 1 2 3 25 25 H 1.08990 * 109.47458 * 329.99917 * 1 2 3 26 26 H 1.08004 * 119.96383 * 359.62250 * 3 2 1 27 27 H 1.07998 * 120.18140 * 180.02562 * 4 3 2 28 28 H 1.08993 * 109.47328 * 89.99883 * 8 7 2 29 29 H 1.09001 * 109.46720 * 210.00737 * 8 7 2 30 30 H 1.08996 * 109.46787 * 329.99725 * 8 7 2 31 31 H 1.09007 * 109.18228 * 207.12784 * 10 9 6 32 32 H 1.09000 * 109.18460 * 326.42063 * 10 9 6 33 33 H 1.09000 * 108.68468 * 55.57848 * 11 10 9 34 34 H 1.09003 * 108.68422 * 173.65352 * 11 10 9 35 35 H 1.09008 * 109.21300 * 307.19758 * 12 11 10 36 36 H 1.08996 * 109.21318 * 187.87777 * 12 11 10 37 37 H 0.97006 * 120.00376 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1989 0.0000 4 6 3.5798 1.2036 0.0075 5 6 4.2664 0.0061 0.0132 6 6 3.5845 -1.1929 -0.0013 7 6 2.1954 -1.1979 -0.0005 8 6 1.4430 -2.5037 0.0006 9 8 4.2651 -2.3711 -0.0472 10 6 4.9222 -2.6579 -1.2861 11 6 6.3060 -2.0439 -1.3198 12 6 6.2941 -0.5226 -1.3027 13 6 5.7826 0.0013 0.0394 14 1 6.1488 1.0150 0.2025 15 6 6.2663 -0.8956 1.1496 16 1 5.6387 -1.6985 1.5074 17 6 7.5098 -0.6912 1.7089 18 7 8.2741 0.2863 1.2730 19 14 8.1090 -1.8025 3.0856 20 1 8.8345 -2.9613 2.5060 21 1 6.9461 -2.2888 3.8707 22 1 9.0227 -1.0407 3.9745 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.6535 2.1328 -0.0062 27 1 4.1197 2.1389 0.0080 28 1 1.2604 -2.8188 -1.0267 29 1 2.0333 -3.2627 0.5140 30 1 0.4911 -2.3741 0.5155 31 1 5.0066 -3.7382 -1.4051 32 1 4.3311 -2.2524 -2.1073 33 1 6.8665 -2.3985 -0.4548 34 1 6.8140 -2.3772 -2.2248 35 1 5.6454 -0.1600 -2.1001 36 1 7.3063 -0.1541 -1.4693 37 1 7.9629 0.8637 0.5583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:34 Heat of formation + Delta-G solvation = -48.759071 kcal Electronic energy + Delta-G solvation = -18653.239837 eV Core-core repulsion = 15973.152866 eV Total energy + Delta-G solvation = -2680.086972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54113 -38.66909 -36.99167 -34.21181 -33.74252 -32.32621 -30.00577 -27.74518 -27.07611 -26.61057 -24.54912 -22.44962 -21.60630 -20.98635 -18.82737 -17.89021 -17.47672 -16.26212 -16.08470 -15.60999 -15.25583 -15.09317 -14.88248 -14.82413 -14.26384 -13.98754 -13.64535 -13.48734 -13.33801 -13.02543 -12.76160 -12.61590 -12.48752 -12.32436 -12.06108 -11.97637 -11.69849 -11.43724 -11.15541 -10.71021 -10.51897 -10.38354 -9.32363 -9.07726 -8.51141 -6.16229 0.41230 0.53071 1.50352 1.58646 1.76621 2.57013 2.65498 3.15049 3.29103 3.94963 3.98918 4.05877 4.13114 4.22841 4.31929 4.33139 4.46765 4.52566 4.64646 4.74768 4.77449 4.86772 4.87784 4.92601 5.02343 5.04491 5.17050 5.18678 5.28576 5.40487 5.45650 5.57848 5.69920 5.72888 5.86332 6.04720 6.20289 6.40469 6.70824 6.84229 7.56345 8.87176 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.008302 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.858046 B = 3371.755912 C = 3505.256681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.104 4.104 6 C 0.089 3.911 7 C -0.118 4.118 8 C -0.101 4.101 9 O -0.330 6.330 10 C 0.079 3.921 11 C -0.136 4.136 12 C -0.096 4.096 13 C 0.060 3.940 14 H 0.004 0.996 15 C -0.558 4.558 16 H 0.054 0.946 17 C -0.035 4.035 18 N -0.947 5.947 19 Si 1.107 2.893 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.287 1.287 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.146 0.854 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 -3.859 -5.550 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.156 4.156 5 C -0.105 4.105 6 C 0.045 3.955 7 C -0.119 4.119 8 C -0.157 4.157 9 O -0.247 6.247 10 C 0.005 3.995 11 C -0.173 4.173 12 C -0.135 4.135 13 C 0.041 3.959 14 H 0.022 0.978 15 C -0.596 4.596 16 H 0.072 0.928 17 C -0.232 4.232 18 N -0.586 5.586 19 Si 0.931 3.069 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.213 1.213 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.164 0.836 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.300 -4.296 -4.396 14.651 hybrid contribution -0.295 1.004 -1.127 1.538 sum -13.595 -3.292 -5.522 15.039 Atomic orbital electron populations 1.20831 0.88190 1.03788 1.03286 1.19955 0.97809 0.91264 1.00672 1.21241 0.92924 0.98776 1.01462 1.21073 0.95271 0.96686 1.02589 1.20775 0.97474 0.93640 0.98570 1.18457 0.90173 0.85178 1.01655 1.20272 0.91567 0.97468 1.02558 1.20683 0.99684 0.92474 1.02853 1.86199 1.67268 1.35039 1.36198 1.22455 0.91961 1.00873 0.84246 1.21491 0.98514 0.95487 1.01842 1.21292 0.98405 0.96642 0.97114 1.18133 0.87879 0.95574 0.94337 0.97794 1.22154 1.03273 1.15342 1.18854 0.92809 1.26975 0.94507 0.99174 1.02513 1.70891 1.39556 1.18590 1.29556 0.83032 0.75610 0.74423 0.73824 1.19901 1.20469 1.21294 0.89918 0.90216 0.90482 0.83611 0.86907 0.90288 0.92458 0.89248 0.86868 0.93124 0.92102 0.91032 0.94340 0.95143 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.60 71.23 0.68 -1.35 16 2 C -0.10 -2.88 5.88 -19.87 -0.12 -3.00 16 3 C -0.13 -4.04 9.70 22.32 0.22 -3.82 16 4 C -0.14 -5.53 9.70 22.26 0.22 -5.32 16 5 C -0.10 -4.77 4.64 -19.68 -0.09 -4.86 16 6 C 0.09 3.75 5.21 22.36 0.12 3.86 16 7 C -0.12 -4.03 5.90 -19.72 -0.12 -4.14 16 8 C -0.10 -2.63 9.37 71.24 0.67 -1.96 16 9 O -0.33 -14.10 7.22 -95.22 -0.69 -14.79 16 10 C 0.08 2.85 6.48 71.47 0.46 3.31 16 11 C -0.14 -5.62 5.29 29.80 0.16 -5.46 16 12 C -0.10 -4.48 5.43 30.27 0.16 -4.31 16 13 C 0.06 3.10 2.09 -12.02 -0.03 3.07 16 14 H 0.00 0.22 6.56 -2.38 -0.02 0.21 16 15 C -0.56 -31.67 5.56 25.60 0.14 -31.53 16 16 H 0.05 3.16 6.02 -2.91 -0.02 3.15 16 17 C -0.04 -2.04 5.46 84.66 0.46 -1.58 16 18 N -0.95 -58.74 13.63 21.45 0.29 -58.45 16 19 Si 1.11 52.71 29.90 68.60 2.05 54.76 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.36 5.95 -2.39 -0.01 1.35 16 25 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 26 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 27 H 0.11 4.41 7.99 -2.91 -0.02 4.39 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.65 7.57 -2.39 -0.02 1.63 16 30 H 0.09 1.83 5.96 -2.39 -0.01 1.82 16 31 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 32 H 0.05 1.68 7.90 -2.39 -0.02 1.66 16 33 H 0.06 2.93 6.51 -2.39 -0.02 2.92 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.04 1.63 7.90 -2.38 -0.02 1.61 16 36 H 0.03 1.49 8.00 -2.39 -0.02 1.47 16 37 H 0.25 15.99 6.53 -92.70 -0.61 15.38 16 Total: -1.00 -68.49 287.95 5.82 -62.67 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.22 Total: 12.90 kcal Atomic # 6 Polarization: -60.04 SS G_CDS: 2.94 Total: -57.10 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.29 Total: -58.45 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.69 Total: -14.79 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.05 Total: 54.76 kcal Total: -68.49 5.82 -62.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -68.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds