Wall clock time and date at job start Mon Mar 30 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38285 * 119.88213 * 2 1 4 4 C 1.38387 * 120.06032 * 180.16232 * 3 2 1 5 5 C 1.38007 * 119.63893 * 359.92319 * 4 3 2 6 6 C 1.37956 * 120.56493 * 359.65930 * 5 4 3 7 7 C 1.38163 * 119.87223 * 180.25492 * 2 1 3 8 8 C 1.50694 * 120.16283 * 0.16472 * 7 2 1 9 9 O 1.36124 * 120.39941 * 181.71241 * 6 5 4 10 10 C 1.43149 * 115.60252 * 70.44360 * 9 6 5 11 11 C 1.51427 * 110.92587 * 273.27676 * 10 9 6 12 12 C 1.52145 * 113.45394 * 65.41031 * 11 10 9 13 13 C 1.51677 * 120.02743 * 178.85275 * 5 4 3 14 14 H 1.08997 * 109.59869 * 352.42277 * 13 5 4 15 15 C 1.50701 * 109.59549 * 231.95178 * 13 5 4 16 16 H 1.07996 * 120.00412 * 335.10397 * 15 13 5 17 17 C 1.37881 * 119.99873 * 155.11256 * 15 13 5 18 18 N 1.31517 * 119.99815 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00178 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47202 * 89.99510 * 19 17 15 21 21 H 1.48500 * 109.46974 * 209.99886 * 19 17 15 22 22 H 1.48496 * 109.46919 * 329.99568 * 19 17 15 23 23 H 1.08997 * 109.47536 * 90.00040 * 1 2 3 24 24 H 1.09001 * 109.47641 * 210.00402 * 1 2 3 25 25 H 1.09009 * 109.47051 * 330.00210 * 1 2 3 26 26 H 1.08003 * 119.96706 * 0.43766 * 3 2 1 27 27 H 1.08004 * 120.18460 * 179.97438 * 4 3 2 28 28 H 1.09010 * 109.47187 * 270.25198 * 8 7 2 29 29 H 1.08993 * 109.47464 * 30.25149 * 8 7 2 30 30 H 1.08998 * 109.47075 * 150.25652 * 8 7 2 31 31 H 1.09000 * 109.18907 * 152.90627 * 10 9 6 32 32 H 1.09002 * 109.15176 * 33.62563 * 10 9 6 33 33 H 1.08998 * 108.68883 * 304.39006 * 11 10 9 34 34 H 1.08999 * 108.69486 * 186.43746 * 11 10 9 35 35 H 1.09005 * 109.20677 * 172.08288 * 12 11 10 36 36 H 1.08998 * 109.21003 * 52.76889 * 12 11 10 37 37 H 0.96999 * 119.99985 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1990 0.0000 4 6 3.5798 1.2033 -0.0034 5 6 4.2660 0.0059 -0.0052 6 6 3.5843 -1.1934 0.0035 7 6 2.1951 -1.1980 -0.0053 8 6 1.4425 -2.5035 -0.0149 9 8 4.2643 -2.3721 0.0368 10 6 4.9253 -2.6702 1.2711 11 6 6.3092 -2.0565 1.3055 12 6 6.2972 -0.5351 1.3011 13 6 5.7825 0.0002 -0.0352 14 1 6.1490 1.0153 -0.1879 15 6 6.2625 -0.8877 -1.1542 16 1 5.6342 -1.6880 -1.5160 17 6 7.5041 -0.6783 -1.7161 18 7 8.2692 0.2966 -1.2758 19 14 8.0995 -1.7793 -3.1027 20 1 7.6867 -1.2005 -4.4064 21 1 9.5802 -1.8811 -3.0529 22 1 7.5050 -3.1316 -2.9510 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6535 2.1329 0.0071 27 1 4.1199 2.1386 -0.0038 28 1 1.2545 -2.8221 1.0105 29 1 0.4933 -2.3719 -0.5342 30 1 2.0353 -3.2609 -0.5277 31 1 5.0101 -3.7514 1.3800 32 1 4.3362 -2.2722 2.0974 33 1 6.8670 -2.4037 0.4358 34 1 6.8210 -2.3990 2.2048 35 1 7.3099 -0.1680 1.4684 36 1 5.6505 -0.1792 2.1031 37 1 9.1425 0.4441 -1.6713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062571899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:36 Heat of formation + Delta-G solvation = -31.837234 kcal Electronic energy + Delta-G solvation = -18609.050624 eV Core-core repulsion = 15929.697439 eV Total energy + Delta-G solvation = -2679.353186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91710 -37.12503 -34.93886 -32.52095 -31.91211 -30.85953 -28.60917 -26.33081 -25.56737 -24.92525 -22.79887 -20.89792 -19.99594 -18.96111 -16.78158 -16.22224 -15.42771 -14.82621 -14.64770 -14.10308 -13.69191 -13.55482 -13.31974 -12.65872 -12.53947 -12.47327 -12.33318 -12.01242 -11.85476 -11.46468 -11.41503 -11.16296 -10.85320 -10.67281 -10.53133 -10.24001 -10.02151 -9.63794 -9.17374 -9.06352 -8.74332 -8.35572 -7.82270 -7.48851 -5.97089 -3.94624 1.94092 2.06684 3.34691 3.41260 3.46847 4.15934 4.49836 4.70797 5.28531 5.37356 5.39222 5.54099 5.63322 5.71824 5.76408 5.81589 5.88803 5.96218 6.01097 6.06846 6.10953 6.22305 6.25568 6.39191 6.52990 6.65458 6.71817 6.80867 7.08286 7.14112 7.22814 7.26978 7.41273 7.49481 7.67563 7.85675 8.03304 8.36810 8.50641 9.13514 9.65648 11.13164 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.008272 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.636868 B = 3383.954625 C = 3521.007694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.069 4.069 6 C 0.109 3.891 7 C -0.112 4.112 8 C -0.103 4.103 9 O -0.313 6.313 10 C 0.079 3.921 11 C -0.141 4.141 12 C -0.096 4.096 13 C 0.073 3.927 14 H 0.056 0.944 15 C -0.488 4.488 16 H 0.072 0.928 17 C 0.058 3.942 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.272 1.272 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 -2.284 5.071 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.069 4.069 6 C 0.065 3.935 7 C -0.113 4.113 8 C -0.160 4.160 9 O -0.229 6.229 10 C 0.005 3.995 11 C -0.178 4.178 12 C -0.134 4.134 13 C 0.054 3.946 14 H 0.075 0.925 15 C -0.526 4.526 16 H 0.090 0.910 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.197 1.197 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.676 -2.359 4.903 11.982 hybrid contribution 0.597 -0.266 -0.657 0.927 sum -10.078 -2.625 4.246 11.247 Atomic orbital electron populations 1.20693 0.92012 1.01896 1.01568 1.19375 0.95138 0.92342 1.03722 1.20889 0.94286 0.96681 1.03090 1.20958 0.93467 0.97727 1.01471 1.21092 0.99732 0.91605 0.94502 1.18223 0.88714 0.85921 1.00638 1.19841 0.92663 0.95014 1.03743 1.20590 0.99191 0.94867 1.01345 1.86233 1.66767 1.35035 1.34856 1.22318 0.93618 0.98939 0.84674 1.21569 0.96618 0.97678 1.01947 1.21311 1.00240 0.94210 0.97664 1.18188 0.83866 0.99220 0.93310 0.92539 1.21228 1.00873 1.14228 1.16252 0.91001 1.24977 0.97097 0.95407 0.96754 1.69941 1.10517 1.30784 1.42459 0.86648 0.77588 0.81421 0.82772 1.20841 1.21471 1.19697 0.91926 0.91961 0.92230 0.87041 0.86372 0.92255 0.92183 0.91177 0.90253 0.94495 0.88939 0.93990 0.92193 0.96081 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.18 36.01 0.33 -0.98 16 2 C -0.11 -1.76 5.88 -104.63 -0.61 -2.37 16 3 C -0.13 -2.25 9.70 -39.51 -0.38 -2.64 16 4 C -0.12 -2.34 9.69 -39.61 -0.38 -2.73 16 5 C -0.07 -1.54 4.64 -104.33 -0.48 -2.02 16 6 C 0.11 2.31 5.21 -39.43 -0.21 2.10 16 7 C -0.11 -2.04 5.90 -104.40 -0.62 -2.66 16 8 C -0.10 -1.54 8.95 36.00 0.32 -1.21 16 9 O -0.31 -6.71 7.21 -20.13 -0.15 -6.85 16 10 C 0.08 1.48 6.49 36.36 0.24 1.71 16 11 C -0.14 -2.89 5.29 -27.96 -0.15 -3.04 16 12 C -0.10 -2.17 5.44 -27.23 -0.15 -2.32 16 13 C 0.07 1.81 2.38 -92.50 -0.22 1.59 16 14 H 0.06 1.54 7.40 -51.93 -0.38 1.16 16 15 C -0.49 -13.22 5.56 -34.44 -0.19 -13.41 16 16 H 0.07 2.02 6.02 -52.49 -0.32 1.71 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -25.77 12.96 55.43 0.72 -25.05 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.70 6.73 -51.93 -0.35 0.35 16 25 H 0.06 0.65 8.08 -51.92 -0.42 0.23 16 26 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 27 H 0.12 2.22 7.98 -52.48 -0.42 1.80 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.06 0.77 6.73 -51.93 -0.35 0.42 16 30 H 0.07 1.10 7.56 -51.93 -0.39 0.70 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 33 H 0.09 2.16 6.51 -51.93 -0.34 1.83 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.02 0.43 7.89 -51.93 -0.41 0.02 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -29.23 290.69 -8.13 -37.36 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.46 Total: -0.07 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -2.60 Total: -26.46 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.72 Total: -25.05 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.15 Total: -6.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.23 -8.13 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.527 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds