Wall clock time and date at job start Mon Mar 30 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38285 * 119.88213 * 2 1 4 4 C 1.38387 * 120.06032 * 180.16232 * 3 2 1 5 5 C 1.38007 * 119.63893 * 359.92319 * 4 3 2 6 6 C 1.37956 * 120.56493 * 359.65930 * 5 4 3 7 7 C 1.38163 * 119.87223 * 180.25492 * 2 1 3 8 8 C 1.50694 * 120.16283 * 0.16472 * 7 2 1 9 9 O 1.36124 * 120.39941 * 181.71241 * 6 5 4 10 10 C 1.43149 * 115.60252 * 70.44360 * 9 6 5 11 11 C 1.51427 * 110.92587 * 273.27676 * 10 9 6 12 12 C 1.52145 * 113.45394 * 65.41031 * 11 10 9 13 13 C 1.51677 * 120.02743 * 178.85275 * 5 4 3 14 14 H 1.08997 * 109.59869 * 352.42277 * 13 5 4 15 15 C 1.50701 * 109.59549 * 231.95178 * 13 5 4 16 16 H 1.07996 * 120.00412 * 335.10397 * 15 13 5 17 17 C 1.37881 * 119.99873 * 155.11256 * 15 13 5 18 18 N 1.31517 * 119.99815 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00178 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47202 * 89.99510 * 19 17 15 21 21 H 1.48500 * 109.46974 * 209.99886 * 19 17 15 22 22 H 1.48496 * 109.46919 * 329.99568 * 19 17 15 23 23 H 1.08997 * 109.47536 * 90.00040 * 1 2 3 24 24 H 1.09001 * 109.47641 * 210.00402 * 1 2 3 25 25 H 1.09009 * 109.47051 * 330.00210 * 1 2 3 26 26 H 1.08003 * 119.96706 * 0.43766 * 3 2 1 27 27 H 1.08004 * 120.18460 * 179.97438 * 4 3 2 28 28 H 1.09010 * 109.47187 * 270.25198 * 8 7 2 29 29 H 1.08993 * 109.47464 * 30.25149 * 8 7 2 30 30 H 1.08998 * 109.47075 * 150.25652 * 8 7 2 31 31 H 1.09000 * 109.18907 * 152.90627 * 10 9 6 32 32 H 1.09002 * 109.15176 * 33.62563 * 10 9 6 33 33 H 1.08998 * 108.68883 * 304.39006 * 11 10 9 34 34 H 1.08999 * 108.69486 * 186.43746 * 11 10 9 35 35 H 1.09005 * 109.20677 * 172.08288 * 12 11 10 36 36 H 1.08998 * 109.21003 * 52.76889 * 12 11 10 37 37 H 0.96999 * 119.99985 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1990 0.0000 4 6 3.5798 1.2033 -0.0034 5 6 4.2660 0.0059 -0.0052 6 6 3.5843 -1.1934 0.0035 7 6 2.1951 -1.1980 -0.0053 8 6 1.4425 -2.5035 -0.0149 9 8 4.2643 -2.3721 0.0368 10 6 4.9253 -2.6702 1.2711 11 6 6.3092 -2.0565 1.3055 12 6 6.2972 -0.5351 1.3011 13 6 5.7825 0.0002 -0.0352 14 1 6.1490 1.0153 -0.1879 15 6 6.2625 -0.8877 -1.1542 16 1 5.6342 -1.6880 -1.5160 17 6 7.5041 -0.6783 -1.7161 18 7 8.2692 0.2966 -1.2758 19 14 8.0995 -1.7793 -3.1027 20 1 7.6867 -1.2005 -4.4064 21 1 9.5802 -1.8811 -3.0529 22 1 7.5050 -3.1316 -2.9510 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6535 2.1329 0.0071 27 1 4.1199 2.1386 -0.0038 28 1 1.2545 -2.8221 1.0105 29 1 0.4933 -2.3719 -0.5342 30 1 2.0353 -3.2609 -0.5277 31 1 5.0101 -3.7514 1.3800 32 1 4.3362 -2.2722 2.0974 33 1 6.8670 -2.4037 0.4358 34 1 6.8210 -2.3990 2.2048 35 1 7.3099 -0.1680 1.4684 36 1 5.6505 -0.1792 2.1031 37 1 9.1425 0.4441 -1.6713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:35 Heat of formation + Delta-G solvation = -47.071998 kcal Electronic energy + Delta-G solvation = -18609.711253 eV Core-core repulsion = 15929.697439 eV Total energy + Delta-G solvation = -2680.013815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43782 -38.58039 -36.69824 -34.12973 -33.68576 -32.32160 -30.08176 -27.74284 -27.00552 -26.85128 -24.39173 -22.38515 -21.54806 -20.66536 -18.49559 -17.85280 -17.12586 -16.69707 -16.10976 -15.73738 -15.07861 -14.98595 -14.76391 -14.28498 -14.24349 -14.01869 -13.51325 -13.36571 -13.24791 -13.11797 -12.88596 -12.74422 -12.52918 -12.33750 -12.08663 -11.99960 -11.66116 -11.36175 -10.94239 -10.89309 -10.58742 -10.40131 -9.24353 -9.00825 -8.09139 -6.11609 0.49182 0.61122 1.37523 1.38892 1.49843 2.44102 2.72157 3.20341 3.26167 4.04746 4.08707 4.15241 4.24210 4.35549 4.41168 4.45049 4.54432 4.62398 4.75844 4.85967 4.86593 4.94164 4.96622 5.01934 5.06197 5.10076 5.27270 5.33739 5.43163 5.55299 5.60267 5.68279 5.77110 5.80943 5.90478 6.03279 6.12815 6.43810 6.87163 6.99248 7.50608 9.00675 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.008272 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.636868 B = 3383.954625 C = 3521.007694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.135 4.135 5 C -0.105 4.105 6 C 0.087 3.913 7 C -0.119 4.119 8 C -0.099 4.099 9 O -0.331 6.331 10 C 0.078 3.922 11 C -0.136 4.136 12 C -0.090 4.090 13 C 0.072 3.928 14 H 0.016 0.984 15 C -0.483 4.483 16 H 0.060 0.940 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.943 3.057 20 H -0.281 1.281 21 H -0.284 1.284 22 H -0.268 1.268 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 -3.388 5.487 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.154 4.154 5 C -0.106 4.106 6 C 0.044 3.956 7 C -0.119 4.119 8 C -0.155 4.155 9 O -0.248 6.248 10 C 0.004 3.996 11 C -0.174 4.174 12 C -0.128 4.128 13 C 0.054 3.946 14 H 0.034 0.966 15 C -0.522 4.522 16 H 0.078 0.922 17 C -0.189 4.189 18 N -0.571 5.571 19 Si 0.770 3.230 20 H -0.208 1.208 21 H -0.210 1.210 22 H -0.193 1.193 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.163 0.837 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.639 -3.470 5.321 15.046 hybrid contribution 1.419 0.127 -0.744 1.607 sum -12.220 -3.344 4.576 13.471 Atomic orbital electron populations 1.20788 0.88355 1.03818 1.02988 1.19936 0.97678 0.91324 1.00938 1.21239 0.93031 0.98667 1.01562 1.21074 0.95119 0.96838 1.02335 1.20940 0.98075 0.93466 0.98114 1.18463 0.90119 0.85215 1.01805 1.20255 0.91625 0.97330 1.02706 1.20633 0.99550 0.92610 1.02752 1.86192 1.67159 1.35140 1.36314 1.22465 0.92084 1.00655 0.84408 1.21502 0.98229 0.95903 1.01752 1.21181 0.98681 0.95995 0.96960 1.18004 0.86439 0.96428 0.93745 0.96605 1.21354 1.00504 1.13833 1.16482 0.92205 1.25654 0.97440 0.96716 0.99055 1.70063 1.10802 1.32387 1.43889 0.85765 0.77241 0.79910 0.80091 1.20753 1.20950 1.19270 0.90532 0.90271 0.90246 0.83740 0.86810 0.90349 0.89617 0.92422 0.87107 0.93048 0.92238 0.91175 0.94845 0.94722 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 9.18 71.24 0.65 -1.38 16 2 C -0.10 -2.95 5.88 -19.87 -0.12 -3.06 16 3 C -0.13 -4.08 9.70 22.32 0.22 -3.86 16 4 C -0.14 -5.43 9.69 22.25 0.22 -5.21 16 5 C -0.11 -4.81 4.64 -19.67 -0.09 -4.91 16 6 C 0.09 3.67 5.21 22.37 0.12 3.78 16 7 C -0.12 -4.04 5.90 -19.72 -0.12 -4.16 16 8 C -0.10 -2.59 8.95 71.23 0.64 -1.96 16 9 O -0.33 -14.07 7.21 -94.96 -0.68 -14.75 16 10 C 0.08 2.82 6.49 71.47 0.46 3.28 16 11 C -0.14 -5.63 5.29 29.80 0.16 -5.47 16 12 C -0.09 -4.22 5.44 30.27 0.16 -4.05 16 13 C 0.07 3.78 2.38 -12.01 -0.03 3.76 16 14 H 0.02 0.92 7.40 -2.39 -0.02 0.90 16 15 C -0.48 -27.24 5.56 25.60 0.14 -27.09 16 16 H 0.06 3.47 6.02 -2.91 -0.02 3.45 16 17 C 0.01 0.47 5.46 84.66 0.46 0.93 16 18 N -0.93 -55.83 12.96 21.45 0.28 -55.55 16 19 Si 0.94 45.74 29.54 68.60 2.03 47.77 16 20 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.33 6.73 -2.39 -0.02 1.32 16 25 H 0.08 1.30 8.08 -2.38 -0.02 1.28 16 26 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 27 H 0.11 4.47 7.98 -2.91 -0.02 4.45 16 28 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.09 1.79 6.73 -2.39 -0.02 1.77 16 30 H 0.06 1.66 7.56 -2.39 -0.02 1.64 16 31 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.05 1.70 7.89 -2.39 -0.02 1.68 16 33 H 0.06 2.85 6.51 -2.39 -0.02 2.83 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.03 1.48 7.89 -2.39 -0.02 1.46 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -66.17 290.69 5.55 -60.62 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.05 Total: 11.31 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 2.88 Total: -49.40 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.68 Total: -14.75 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -66.17 5.55 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.548 kcal (2) G-P(sol) polarization free energy of solvation -66.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds