Wall clock time and date at job start Mon Mar 30 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38298 * 119.98086 * 2 1 4 4 C 1.38149 * 120.26393 * 180.47743 * 3 2 1 5 5 C 1.50698 * 120.14530 * 179.97438 * 4 3 2 6 6 C 1.38950 * 119.70397 * 0.02562 * 4 3 2 7 7 C 1.37965 * 119.72751 * 359.17142 * 6 4 3 8 8 C 1.37977 * 120.63784 * 1.17137 * 7 6 4 9 9 C 1.51713 * 119.28797 * 181.35207 * 7 6 4 10 10 H 1.09002 * 109.59916 * 171.94239 * 9 7 6 11 11 C 1.50703 * 109.59738 * 51.47355 * 9 7 6 12 12 H 1.08000 * 119.99526 * 335.34868 * 11 9 7 13 13 C 1.37876 * 119.99777 * 155.34128 * 11 9 7 14 14 N 1.31513 * 119.99780 * 189.00781 * 13 11 9 15 15 Si 1.86797 * 120.00287 * 9.01367 * 13 11 9 16 16 H 1.48504 * 109.47207 * 87.72819 * 15 13 11 17 17 H 1.48503 * 109.47202 * 207.72977 * 15 13 11 18 18 H 1.48500 * 109.47243 * 327.73143 * 15 13 11 19 19 C 1.52853 * 108.71153 * 291.70925 * 9 7 6 20 20 C 1.52124 * 110.84458 * 83.49810 * 19 9 7 21 21 C 1.51433 * 113.45709 * 292.28873 * 20 19 9 22 22 O 1.36062 * 119.75137 * 178.50672 * 6 4 3 23 23 H 1.09000 * 109.47352 * 90.00079 * 1 2 3 24 24 H 1.09001 * 109.47169 * 209.99857 * 1 2 3 25 25 H 1.09002 * 109.47638 * 330.00039 * 1 2 3 26 26 H 1.08002 * 119.86414 * 0.45629 * 3 2 1 27 27 H 1.09004 * 109.46963 * 270.01645 * 5 4 3 28 28 H 1.08996 * 109.47183 * 30.02012 * 5 4 3 29 29 H 1.09000 * 109.47089 * 150.02311 * 5 4 3 30 30 H 1.08000 * 120.19329 * 179.30359 * 8 7 6 31 31 H 0.97003 * 120.00332 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.20661 * 203.85073 * 19 9 7 33 33 H 1.09006 * 109.20681 * 323.14508 * 19 9 7 34 34 H 1.09007 * 108.68875 * 171.25968 * 20 19 9 35 35 H 1.09004 * 108.58290 * 53.24321 * 20 19 9 36 36 H 1.08998 * 109.19607 * 304.91499 * 21 20 19 37 37 H 1.09000 * 109.15434 * 185.61266 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1979 0.0000 4 6 3.5794 1.2048 -0.0099 5 6 4.3298 2.5117 -0.0105 6 6 4.2739 0.0013 -0.0205 7 6 3.5783 -1.1901 -0.0037 8 6 2.1986 -1.1988 -0.0007 9 6 4.3469 -2.4980 0.0158 10 1 3.6555 -3.3261 0.1714 11 6 5.3647 -2.4697 1.1269 12 1 5.7400 -1.5248 1.4914 13 6 5.8167 -3.6499 1.6779 14 7 6.5651 -3.6266 2.7591 15 14 5.3662 -5.2820 0.8889 16 1 6.3664 -5.6197 -0.1556 17 1 5.3537 -6.3460 1.9248 18 1 4.0203 -5.1779 0.2700 19 6 5.0579 -2.6690 -1.3264 20 6 6.3801 -1.9167 -1.3384 21 6 6.2177 -0.4116 -1.2996 22 8 5.6339 0.0069 -0.0611 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6555 2.1318 0.0075 27 1 4.5030 2.8307 -1.0383 28 1 3.7428 3.2679 0.5107 29 1 5.2864 2.3816 0.4956 30 1 1.6614 -2.1357 0.0012 31 1 6.8834 -4.4570 3.1467 32 1 5.2466 -3.7284 -1.4999 33 1 4.4195 -2.2845 -2.1219 34 1 6.9269 -2.1859 -2.2421 35 1 6.9643 -2.2274 -0.4721 36 1 5.5748 -0.0993 -2.1226 37 1 7.1956 0.0566 -1.4113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062571902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:20 Heat of formation + Delta-G solvation = -27.736417 kcal Electronic energy + Delta-G solvation = -18603.960427 eV Core-core repulsion = 15924.785066 eV Total energy + Delta-G solvation = -2679.175361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98384 -37.13988 -35.05384 -32.55987 -31.79761 -31.62659 -28.31451 -26.69761 -25.76692 -24.76120 -23.13406 -20.89063 -19.88224 -18.86799 -17.21550 -16.55091 -15.57802 -14.72200 -14.61751 -13.99156 -13.68027 -13.52281 -13.32154 -12.85743 -12.80775 -12.76027 -12.51211 -12.18002 -11.86168 -11.75401 -11.66710 -11.25598 -10.85736 -10.71005 -10.53048 -10.29184 -9.94151 -9.61412 -9.44623 -9.25611 -8.76346 -8.47037 -7.93365 -7.53674 -6.00306 -3.94766 1.84109 2.02275 3.28734 3.36822 3.38189 4.09430 4.45181 4.65788 5.20477 5.28614 5.31910 5.44568 5.62070 5.68682 5.70541 5.77726 5.80850 5.86794 5.94359 5.96259 6.03384 6.09060 6.20103 6.31030 6.36968 6.47570 6.57020 6.68028 6.82132 6.94286 7.00687 7.08848 7.19239 7.31206 7.47728 7.51204 7.80000 8.35025 8.63348 9.17900 9.61168 11.12028 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.009431 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.284198 B = 2968.247945 C = 3509.090276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.108 4.108 5 C -0.103 4.103 6 C 0.108 3.892 7 C -0.057 4.057 8 C -0.121 4.121 9 C 0.039 3.961 10 H 0.045 0.955 11 C -0.489 4.489 12 H 0.093 0.907 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.863 3.137 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.264 1.264 19 C -0.110 4.110 20 C -0.145 4.145 21 C 0.081 3.919 22 O -0.307 6.307 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 7.475 -8.663 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.102 4.102 3 C -0.148 4.148 4 C -0.109 4.109 5 C -0.160 4.160 6 C 0.064 3.936 7 C -0.058 4.058 8 C -0.139 4.139 9 C 0.020 3.980 10 H 0.063 0.937 11 C -0.527 4.527 12 H 0.111 0.889 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.691 3.309 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.189 1.189 19 C -0.148 4.148 20 C -0.183 4.183 21 C 0.006 3.994 22 O -0.223 6.223 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.132 0.868 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.628 7.406 -8.381 13.001 hybrid contribution -0.255 -1.237 -0.486 1.353 sum -6.884 6.169 -8.867 12.809 Atomic orbital electron populations 1.20687 0.91907 1.02170 1.01512 1.19789 0.95409 0.93220 1.01804 1.20516 0.92758 0.96991 1.04530 1.20030 0.93631 0.94702 1.02533 1.20578 1.00476 0.93492 1.01432 1.18199 0.83583 0.91149 1.00654 1.20664 0.93386 0.96736 0.94971 1.20790 0.93376 0.97045 1.02693 1.18679 0.95043 0.90002 0.94278 0.93716 1.21076 1.21036 0.95352 1.15233 0.88870 1.24971 0.95388 0.98340 0.94341 1.69921 1.36642 1.27238 1.19780 0.87134 0.79563 0.84799 0.79431 1.20279 1.21751 1.18931 1.21552 0.96329 0.98620 0.98306 1.21593 0.99244 0.94904 1.02538 1.22280 0.96967 0.95515 0.84623 1.86288 1.15559 1.86054 1.34425 0.91927 0.91913 0.92134 0.86824 0.92161 0.92322 0.90927 0.86547 0.92833 0.93427 0.94850 0.93594 0.88155 0.94460 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.00 0.36 -0.97 16 2 C -0.10 -1.69 5.89 -104.54 -0.62 -2.31 16 3 C -0.13 -2.12 9.35 -39.59 -0.37 -2.49 16 4 C -0.11 -1.95 5.90 -104.39 -0.62 -2.57 16 5 C -0.10 -1.52 9.78 36.00 0.35 -1.17 16 6 C 0.11 2.27 5.21 -39.42 -0.21 2.06 16 7 C -0.06 -1.24 4.64 -104.32 -0.48 -1.72 16 8 C -0.12 -2.31 9.35 -39.62 -0.37 -2.68 16 9 C 0.04 0.92 1.98 -92.50 -0.18 0.73 16 10 H 0.04 1.08 5.67 -51.93 -0.29 0.79 16 11 C -0.49 -13.47 6.10 -34.44 -0.21 -13.68 16 12 H 0.09 2.86 6.28 -52.49 -0.33 2.53 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 15 Si 0.86 21.25 25.93 -169.99 -4.41 16.84 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.26 -6.22 6.08 56.52 0.34 -5.87 16 19 C -0.11 -2.31 5.06 -27.25 -0.14 -2.45 16 20 C -0.15 -2.89 5.30 -27.97 -0.15 -3.04 16 21 C 0.08 1.48 6.49 36.37 0.24 1.72 16 22 O -0.31 -6.63 7.21 -19.94 -0.14 -6.77 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.07 1.15 7.55 -51.93 -0.39 0.75 16 30 H 0.12 2.06 7.99 -52.49 -0.42 1.64 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.05 0.99 6.46 -51.93 -0.34 0.66 16 33 H 0.03 0.63 7.89 -51.93 -0.41 0.22 16 34 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.10 2.34 6.49 -51.93 -0.34 2.00 16 36 H 0.04 0.62 7.90 -51.93 -0.41 0.21 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -30.47 287.35 -7.43 -37.90 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.49 Total: 0.90 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -2.49 Total: -26.63 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.14 Total: -6.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.41 Total: 16.84 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.47 -7.43 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds