Wall clock time and date at job start Mon Mar 30 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38298 * 119.98086 * 2 1 4 4 C 1.38149 * 120.26393 * 180.47743 * 3 2 1 5 5 C 1.50698 * 120.14530 * 179.97438 * 4 3 2 6 6 C 1.38950 * 119.70397 * 0.02562 * 4 3 2 7 7 C 1.37965 * 119.72751 * 359.17142 * 6 4 3 8 8 C 1.37977 * 120.63784 * 1.17137 * 7 6 4 9 9 C 1.51713 * 119.28797 * 181.35207 * 7 6 4 10 10 H 1.09002 * 109.59916 * 171.94239 * 9 7 6 11 11 C 1.50703 * 109.59738 * 51.47355 * 9 7 6 12 12 H 1.08000 * 119.99526 * 335.34868 * 11 9 7 13 13 C 1.37876 * 119.99777 * 155.34128 * 11 9 7 14 14 N 1.31513 * 119.99780 * 189.00781 * 13 11 9 15 15 Si 1.86797 * 120.00287 * 9.01367 * 13 11 9 16 16 H 1.48504 * 109.47207 * 87.72819 * 15 13 11 17 17 H 1.48503 * 109.47202 * 207.72977 * 15 13 11 18 18 H 1.48500 * 109.47243 * 327.73143 * 15 13 11 19 19 C 1.52853 * 108.71153 * 291.70925 * 9 7 6 20 20 C 1.52124 * 110.84458 * 83.49810 * 19 9 7 21 21 C 1.51433 * 113.45709 * 292.28873 * 20 19 9 22 22 O 1.36062 * 119.75137 * 178.50672 * 6 4 3 23 23 H 1.09000 * 109.47352 * 90.00079 * 1 2 3 24 24 H 1.09001 * 109.47169 * 209.99857 * 1 2 3 25 25 H 1.09002 * 109.47638 * 330.00039 * 1 2 3 26 26 H 1.08002 * 119.86414 * 0.45629 * 3 2 1 27 27 H 1.09004 * 109.46963 * 270.01645 * 5 4 3 28 28 H 1.08996 * 109.47183 * 30.02012 * 5 4 3 29 29 H 1.09000 * 109.47089 * 150.02311 * 5 4 3 30 30 H 1.08000 * 120.19329 * 179.30359 * 8 7 6 31 31 H 0.97003 * 120.00332 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.20661 * 203.85073 * 19 9 7 33 33 H 1.09006 * 109.20681 * 323.14508 * 19 9 7 34 34 H 1.09007 * 108.68875 * 171.25968 * 20 19 9 35 35 H 1.09004 * 108.58290 * 53.24321 * 20 19 9 36 36 H 1.08998 * 109.19607 * 304.91499 * 21 20 19 37 37 H 1.09000 * 109.15434 * 185.61266 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1979 0.0000 4 6 3.5794 1.2048 -0.0099 5 6 4.3298 2.5117 -0.0105 6 6 4.2739 0.0013 -0.0205 7 6 3.5783 -1.1901 -0.0037 8 6 2.1986 -1.1988 -0.0007 9 6 4.3469 -2.4980 0.0158 10 1 3.6555 -3.3261 0.1714 11 6 5.3647 -2.4697 1.1269 12 1 5.7400 -1.5248 1.4914 13 6 5.8167 -3.6499 1.6779 14 7 6.5651 -3.6266 2.7591 15 14 5.3662 -5.2820 0.8889 16 1 6.3664 -5.6197 -0.1556 17 1 5.3537 -6.3460 1.9248 18 1 4.0203 -5.1779 0.2700 19 6 5.0579 -2.6690 -1.3264 20 6 6.3801 -1.9167 -1.3384 21 6 6.2177 -0.4116 -1.2996 22 8 5.6339 0.0069 -0.0611 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6555 2.1318 0.0075 27 1 4.5030 2.8307 -1.0383 28 1 3.7428 3.2679 0.5107 29 1 5.2864 2.3816 0.4956 30 1 1.6614 -2.1357 0.0012 31 1 6.8834 -4.4570 3.1467 32 1 5.2466 -3.7284 -1.4999 33 1 4.4195 -2.2845 -2.1219 34 1 6.9269 -2.1859 -2.2421 35 1 6.9643 -2.2274 -0.4721 36 1 5.5748 -0.0993 -2.1226 37 1 7.1956 0.0566 -1.4113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:20 Heat of formation + Delta-G solvation = -45.338720 kcal Electronic energy + Delta-G solvation = -18604.723720 eV Core-core repulsion = 15924.785066 eV Total energy + Delta-G solvation = -2679.938654 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.46740 -38.55866 -36.76148 -34.17682 -33.53740 -33.08309 -29.85729 -27.95472 -27.31657 -26.38160 -24.82668 -22.36498 -21.25023 -20.60138 -18.92298 -18.24568 -17.20124 -16.51903 -16.14325 -15.39040 -15.32985 -14.87501 -14.68856 -14.49588 -14.44654 -14.20692 -13.87349 -13.44893 -13.38485 -13.17783 -12.96430 -12.75151 -12.57452 -12.22985 -12.05008 -11.82632 -11.76612 -11.32448 -11.13569 -11.01365 -10.61878 -10.48553 -9.36198 -8.95684 -8.19414 -6.16535 0.45542 0.60173 1.32014 1.33148 1.42010 2.37244 2.70261 3.14151 3.22606 3.96098 4.00652 4.05076 4.16727 4.26933 4.35036 4.47741 4.51861 4.58720 4.69542 4.76252 4.84123 4.86797 4.92937 4.93698 4.96772 5.11216 5.17228 5.20574 5.28110 5.37818 5.47517 5.61457 5.66841 5.75401 5.80542 5.93425 6.10709 6.48731 6.86469 6.94474 7.41937 8.96923 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.009431 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.284198 B = 2968.247945 C = 3509.090276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.097 4.097 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.099 4.099 6 C 0.078 3.922 7 C -0.092 4.092 8 C -0.136 4.136 9 C 0.037 3.963 10 H 0.036 0.964 11 C -0.473 4.473 12 H 0.049 0.951 13 C 0.010 3.990 14 N -0.952 5.952 15 Si 0.924 3.076 16 H -0.266 1.266 17 H -0.295 1.295 18 H -0.245 1.245 19 C -0.108 4.108 20 C -0.143 4.143 21 C 0.077 3.923 22 O -0.334 6.334 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.151 0.849 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 8.630 -10.831 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.143 4.143 4 C -0.116 4.116 5 C -0.156 4.156 6 C 0.035 3.965 7 C -0.092 4.092 8 C -0.155 4.155 9 C 0.018 3.982 10 H 0.054 0.946 11 C -0.511 4.511 12 H 0.067 0.933 13 C -0.186 4.186 14 N -0.594 5.594 15 Si 0.749 3.251 16 H -0.191 1.191 17 H -0.221 1.221 18 H -0.169 1.169 19 C -0.146 4.146 20 C -0.181 4.181 21 C 0.002 3.998 22 O -0.251 6.251 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.169 0.831 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.969 8.571 -10.578 16.303 hybrid contribution 0.422 -1.441 0.193 1.514 sum -8.547 7.130 -10.384 15.222 Atomic orbital electron populations 1.20761 0.88689 1.03420 1.03143 1.20245 0.97693 0.92255 0.99519 1.20980 0.92188 0.98510 1.02583 1.20430 0.94711 0.94879 1.01600 1.20605 0.99572 0.92569 1.02811 1.18520 0.83414 0.92227 1.02378 1.20636 0.94596 0.95968 0.98025 1.20979 0.92538 0.98674 1.03270 1.18583 0.94117 0.91321 0.94138 0.94611 1.21142 1.20998 0.93392 1.15585 0.93331 1.25750 0.95730 1.02229 0.94877 1.70081 1.39236 1.28050 1.22034 0.86129 0.80404 0.79949 0.78603 1.19105 1.22139 1.16897 1.21472 0.96942 0.98885 0.97263 1.21554 0.98351 0.96118 1.02064 1.22455 0.98396 0.94540 0.84367 1.86249 1.16465 1.86249 1.36149 0.89938 0.91577 0.90060 0.83098 0.90169 0.89808 0.92812 0.85941 0.93042 0.93530 0.92601 0.90318 0.92528 0.92461 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 10.01 71.23 0.71 -1.45 16 2 C -0.10 -2.92 5.89 -19.81 -0.12 -3.04 16 3 C -0.12 -3.64 9.35 22.26 0.21 -3.44 16 4 C -0.12 -3.96 5.90 -19.72 -0.12 -4.07 16 5 C -0.10 -2.70 9.78 71.24 0.70 -2.00 16 6 C 0.08 3.28 5.21 22.38 0.12 3.39 16 7 C -0.09 -3.98 4.64 -19.67 -0.09 -4.07 16 8 C -0.14 -5.04 9.35 22.25 0.21 -4.83 16 9 C 0.04 1.78 1.98 -12.01 -0.02 1.76 16 10 H 0.04 1.73 5.67 -2.39 -0.01 1.72 16 11 C -0.47 -27.18 6.10 25.60 0.16 -27.02 16 12 H 0.05 3.18 6.28 -2.91 -0.02 3.16 16 13 C 0.01 0.57 5.47 84.65 0.46 1.04 16 14 N -0.95 -60.97 13.96 21.45 0.30 -60.68 16 15 Si 0.92 44.76 25.93 68.60 1.78 46.54 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 18 H -0.25 -10.99 6.08 99.48 0.61 -10.38 16 19 C -0.11 -4.44 5.06 30.26 0.15 -4.29 16 20 C -0.14 -5.66 5.30 29.79 0.16 -5.50 16 21 C 0.08 2.77 6.49 71.47 0.46 3.23 16 22 O -0.33 -14.75 7.21 -94.26 -0.68 -15.42 16 23 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 25 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 26 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 27 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 29 H 0.05 1.66 7.55 -2.39 -0.02 1.64 16 30 H 0.12 4.21 7.99 -2.91 -0.02 4.18 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.05 1.88 6.46 -2.39 -0.02 1.87 16 33 H 0.06 2.04 7.89 -2.38 -0.02 2.02 16 34 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.06 2.73 6.49 -2.38 -0.02 2.72 16 36 H 0.06 1.82 7.90 -2.39 -0.02 1.80 16 37 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -70.02 287.35 5.33 -64.69 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.95 Total: 15.17 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 2.99 Total: -50.30 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.30 Total: -60.68 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.68 Total: -15.42 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.78 Total: 46.54 kcal Total: -70.02 5.33 -64.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.349 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds