Wall clock time and date at job start Mon Mar 30 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37993 * 119.88655 * 2 1 4 4 C 1.38243 * 119.85139 * 179.97438 * 3 2 1 5 5 C 1.38076 * 120.01348 * 0.16159 * 4 3 2 6 6 C 1.50693 * 119.78403 * 180.02562 * 5 4 3 7 7 C 1.38701 * 120.42667 * 0.02562 * 5 4 3 8 8 C 1.38156 * 119.59964 * 359.67968 * 7 5 4 9 9 O 1.35723 * 121.85283 * 180.53429 * 8 7 5 10 10 C 1.43025 * 117.76100 * 50.11079 * 9 8 7 11 11 C 1.53297 * 107.92753 * 264.33066 * 10 9 8 12 12 C 1.53475 * 108.12240 * 32.17379 * 11 10 9 13 13 C 1.50669 * 118.16356 * 179.64325 * 7 5 4 14 14 H 1.08995 * 109.17893 * 89.03068 * 13 7 5 15 15 C 1.50702 * 109.20856 * 329.68900 * 13 7 5 16 16 H 1.07997 * 120.00544 * 323.52159 * 15 13 7 17 17 C 1.37879 * 119.99505 * 143.52230 * 15 13 7 18 18 N 1.31523 * 119.99854 * 185.69006 * 17 15 13 19 19 Si 1.86797 * 120.00186 * 5.68721 * 17 15 13 20 20 H 1.48504 * 109.47461 * 275.16073 * 19 17 15 21 21 H 1.48495 * 109.47479 * 35.16292 * 19 17 15 22 22 H 1.48504 * 109.47037 * 155.16346 * 19 17 15 23 23 H 1.08997 * 109.47243 * 270.02392 * 1 2 3 24 24 H 1.09002 * 109.47105 * 30.02035 * 1 2 3 25 25 H 1.09004 * 109.47415 * 150.01695 * 1 2 3 26 26 H 1.08000 * 120.07207 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99747 * 180.18142 * 4 3 2 28 28 H 1.09001 * 109.47780 * 29.01445 * 6 5 4 29 29 H 1.08998 * 109.47239 * 149.02149 * 6 5 4 30 30 H 1.08998 * 109.47038 * 269.01707 * 6 5 4 31 31 H 1.09001 * 109.77057 * 144.72386 * 10 9 8 32 32 H 1.08994 * 109.76981 * 23.93358 * 10 9 8 33 33 H 1.09005 * 109.73311 * 272.52045 * 11 10 9 34 34 H 1.08997 * 109.73581 * 151.83444 * 11 10 9 35 35 H 1.09000 * 109.57349 * 298.86272 * 12 11 10 36 36 H 1.09003 * 109.57040 * 178.48662 * 12 11 10 37 37 H 0.96994 * 119.99845 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1964 0.0000 4 6 3.5770 1.1956 0.0005 5 6 4.2669 -0.0005 -0.0023 6 6 5.7738 0.0046 -0.0011 7 6 3.5819 -1.2065 -0.0062 8 6 2.2004 -1.2067 -0.0006 9 8 1.4843 -2.3596 0.0066 10 6 1.8262 -3.3501 0.9801 11 6 2.7771 -4.3538 0.3180 12 6 3.6188 -3.6002 -0.7209 13 6 4.3857 -2.4808 -0.0175 14 1 4.5962 -2.7805 1.0091 15 6 5.6860 -2.2405 -0.7403 16 1 5.7137 -1.5860 -1.5989 17 6 6.8404 -2.8564 -0.3055 18 7 7.9938 -2.5613 -0.8646 19 14 6.7664 -4.1098 1.0776 20 1 6.8140 -3.4075 2.3852 21 1 5.5031 -4.8838 0.9771 22 1 7.9234 -5.0345 0.9700 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5136 26 1 1.6539 2.1313 -0.0004 27 1 4.1175 2.1306 0.0035 28 1 6.1339 0.9031 0.5001 29 1 6.1398 -0.8767 0.5256 30 1 6.1380 -0.0088 -1.0284 31 1 0.9251 -3.8628 1.3166 32 1 2.3212 -2.8778 1.8285 33 1 2.2009 -5.1375 -0.1737 34 1 3.4302 -4.7941 1.0714 35 1 2.9643 -3.1730 -1.4806 36 1 4.3236 -4.2880 -1.1882 37 1 8.8060 -2.9943 -0.5584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062571909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:39 Heat of formation + Delta-G solvation = -13.626200 kcal Electronic energy + Delta-G solvation = -18824.552630 eV Core-core repulsion = 16145.989134 eV Total energy + Delta-G solvation = -2678.563496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19948 -37.21215 -35.60010 -32.36923 -32.19909 -30.79012 -28.62341 -27.35787 -25.33165 -24.37919 -22.61650 -20.59630 -20.27199 -19.21496 -17.19212 -16.47491 -15.70752 -15.21426 -14.71356 -14.29726 -13.91101 -13.51430 -13.30491 -12.90302 -12.74341 -12.20989 -12.03217 -11.95372 -11.71590 -11.52728 -11.10220 -11.00917 -10.82267 -10.68092 -10.53131 -10.36481 -10.03433 -9.83597 -9.67807 -9.27779 -9.15678 -8.33307 -7.58668 -7.51941 -6.13600 -3.97571 1.96793 2.05093 3.21811 3.32658 3.32959 3.96366 4.35480 4.47338 5.11851 5.33260 5.41898 5.44776 5.49340 5.60647 5.73559 5.77888 5.84612 5.94280 6.09950 6.16434 6.20352 6.22810 6.37108 6.42178 6.60386 6.61592 6.80626 6.89343 6.95856 7.08865 7.13383 7.16747 7.32144 7.42701 7.55130 7.70755 7.92489 8.16528 8.46223 8.87427 9.44446 10.97861 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.010653 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.357215 B = 2627.842493 C = 3511.265811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.131 4.131 3 C -0.115 4.115 4 C -0.152 4.152 5 C -0.037 4.037 6 C -0.101 4.101 7 C -0.096 4.096 8 C 0.102 3.898 9 O -0.325 6.325 10 C 0.068 3.932 11 C -0.155 4.155 12 C -0.109 4.109 13 C 0.047 3.953 14 H 0.039 0.961 15 C -0.493 4.493 16 H 0.083 0.917 17 C 0.065 3.935 18 N -0.893 5.893 19 Si 0.862 3.138 20 H -0.277 1.277 21 H -0.259 1.259 22 H -0.289 1.289 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.017 0.983 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 2.078 4.147 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C -0.133 4.133 4 C -0.170 4.170 5 C -0.037 4.037 6 C -0.157 4.157 7 C -0.097 4.097 8 C 0.058 3.942 9 O -0.241 6.241 10 C -0.007 4.007 11 C -0.193 4.193 12 C -0.147 4.147 13 C 0.029 3.971 14 H 0.057 0.943 15 C -0.531 4.531 16 H 0.101 0.899 17 C -0.136 4.136 18 N -0.531 5.531 19 Si 0.689 3.311 20 H -0.203 1.203 21 H -0.183 1.183 22 H -0.216 1.216 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.036 0.964 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.803 1.980 4.026 11.697 hybrid contribution 0.296 -0.707 0.826 1.127 sum -10.507 1.272 4.852 11.643 Atomic orbital electron populations 1.20511 0.91655 1.01994 1.01265 1.19633 0.95763 0.91623 1.06091 1.20628 0.94116 0.96211 1.02322 1.20950 0.93846 0.97654 1.04548 1.20071 0.97530 0.91147 0.94993 1.21425 0.89477 1.01211 1.03569 1.20545 0.91525 0.97503 1.00110 1.18426 0.89471 0.84932 1.01354 1.85840 1.57992 1.25427 1.54878 1.22904 0.98683 0.88868 0.90282 1.22513 0.98399 0.98195 1.00203 1.21974 0.97368 0.97905 0.97467 1.18198 0.94422 0.88148 0.96348 0.94315 1.20895 0.89600 1.28116 1.14477 0.89862 1.24902 0.95285 0.96629 0.96774 1.69870 0.98171 1.42516 1.42553 0.87099 0.78156 0.82719 0.83079 1.20327 1.18341 1.21571 0.92411 0.92551 0.91467 0.86783 0.86854 0.96412 0.87107 0.90521 0.89740 0.92614 0.92279 0.91522 0.92166 0.91636 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.74 36.00 0.35 -1.02 16 2 C -0.13 -2.30 5.90 -104.37 -0.62 -2.91 16 3 C -0.11 -1.92 9.69 -39.67 -0.38 -2.31 16 4 C -0.15 -2.77 9.68 -39.64 -0.38 -3.16 16 5 C -0.04 -0.79 5.73 -104.51 -0.60 -1.38 16 6 C -0.10 -2.24 7.95 36.00 0.29 -1.95 16 7 C -0.10 -2.08 5.28 -104.50 -0.55 -2.63 16 8 C 0.10 2.02 5.60 -39.27 -0.22 1.80 16 9 O -0.33 -6.04 7.76 -18.88 -0.15 -6.19 16 10 C 0.07 1.10 6.52 37.31 0.24 1.35 16 11 C -0.16 -2.72 6.04 -26.33 -0.16 -2.88 16 12 C -0.11 -2.29 4.69 -26.57 -0.12 -2.42 16 13 C 0.05 1.08 1.11 -93.02 -0.10 0.97 16 14 H 0.04 0.90 5.33 -51.93 -0.28 0.62 16 15 C -0.49 -12.66 4.73 -34.44 -0.16 -12.82 16 16 H 0.08 2.36 6.32 -52.49 -0.33 2.03 16 17 C 0.07 1.74 4.51 -17.82 -0.08 1.66 16 18 N -0.89 -25.32 13.96 55.43 0.77 -24.55 16 19 Si 0.86 20.18 26.69 -169.99 -4.54 15.65 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.26 -5.72 5.66 56.52 0.32 -5.40 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.68 8.08 -51.93 -0.42 0.27 16 25 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.02 0.34 8.07 -51.93 -0.42 -0.08 16 29 H 0.11 2.72 4.70 -51.93 -0.24 2.48 16 30 H 0.08 1.83 6.57 -51.93 -0.34 1.49 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.92 7.77 -51.93 -0.40 0.52 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.17 6.90 -51.93 -0.36 0.82 16 35 H 0.06 1.30 6.80 -51.93 -0.35 0.95 16 36 H 0.06 1.44 7.82 -51.93 -0.41 1.04 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 280.08 15.07 4.22 4.22 Total: -1.00 -27.51 280.08 -7.46 -34.98 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.27 Total: 3.61 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.50 Total: -27.71 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.77 Total: -24.55 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.15 Total: -6.19 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.54 Total: 15.65 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.51 -7.46 -34.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.350 kcal (2) G-P(sol) polarization free energy of solvation -27.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds