Wall clock time and date at job start Mon Mar 30 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37993 * 119.88655 * 2 1 4 4 C 1.38243 * 119.85139 * 179.97438 * 3 2 1 5 5 C 1.38076 * 120.01348 * 0.16159 * 4 3 2 6 6 C 1.50693 * 119.78403 * 180.02562 * 5 4 3 7 7 C 1.38701 * 120.42667 * 0.02562 * 5 4 3 8 8 C 1.38156 * 119.59964 * 359.67968 * 7 5 4 9 9 O 1.35723 * 121.85283 * 180.53429 * 8 7 5 10 10 C 1.43025 * 117.76100 * 50.11079 * 9 8 7 11 11 C 1.53297 * 107.92753 * 264.33066 * 10 9 8 12 12 C 1.53475 * 108.12240 * 32.17379 * 11 10 9 13 13 C 1.50669 * 118.16356 * 179.64325 * 7 5 4 14 14 H 1.08995 * 109.17893 * 89.03068 * 13 7 5 15 15 C 1.50702 * 109.20856 * 329.68900 * 13 7 5 16 16 H 1.07997 * 120.00544 * 323.52159 * 15 13 7 17 17 C 1.37879 * 119.99505 * 143.52230 * 15 13 7 18 18 N 1.31523 * 119.99854 * 185.69006 * 17 15 13 19 19 Si 1.86797 * 120.00186 * 5.68721 * 17 15 13 20 20 H 1.48504 * 109.47461 * 275.16073 * 19 17 15 21 21 H 1.48495 * 109.47479 * 35.16292 * 19 17 15 22 22 H 1.48504 * 109.47037 * 155.16346 * 19 17 15 23 23 H 1.08997 * 109.47243 * 270.02392 * 1 2 3 24 24 H 1.09002 * 109.47105 * 30.02035 * 1 2 3 25 25 H 1.09004 * 109.47415 * 150.01695 * 1 2 3 26 26 H 1.08000 * 120.07207 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99747 * 180.18142 * 4 3 2 28 28 H 1.09001 * 109.47780 * 29.01445 * 6 5 4 29 29 H 1.08998 * 109.47239 * 149.02149 * 6 5 4 30 30 H 1.08998 * 109.47038 * 269.01707 * 6 5 4 31 31 H 1.09001 * 109.77057 * 144.72386 * 10 9 8 32 32 H 1.08994 * 109.76981 * 23.93358 * 10 9 8 33 33 H 1.09005 * 109.73311 * 272.52045 * 11 10 9 34 34 H 1.08997 * 109.73581 * 151.83444 * 11 10 9 35 35 H 1.09000 * 109.57349 * 298.86272 * 12 11 10 36 36 H 1.09003 * 109.57040 * 178.48662 * 12 11 10 37 37 H 0.96994 * 119.99845 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1964 0.0000 4 6 3.5770 1.1956 0.0005 5 6 4.2669 -0.0005 -0.0023 6 6 5.7738 0.0046 -0.0011 7 6 3.5819 -1.2065 -0.0062 8 6 2.2004 -1.2067 -0.0006 9 8 1.4843 -2.3596 0.0066 10 6 1.8262 -3.3501 0.9801 11 6 2.7771 -4.3538 0.3180 12 6 3.6188 -3.6002 -0.7209 13 6 4.3857 -2.4808 -0.0175 14 1 4.5962 -2.7805 1.0091 15 6 5.6860 -2.2405 -0.7403 16 1 5.7137 -1.5860 -1.5989 17 6 6.8404 -2.8564 -0.3055 18 7 7.9938 -2.5613 -0.8646 19 14 6.7664 -4.1098 1.0776 20 1 6.8140 -3.4075 2.3852 21 1 5.5031 -4.8838 0.9771 22 1 7.9234 -5.0345 0.9700 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5136 26 1 1.6539 2.1313 -0.0004 27 1 4.1175 2.1306 0.0035 28 1 6.1339 0.9031 0.5001 29 1 6.1398 -0.8767 0.5256 30 1 6.1380 -0.0088 -1.0284 31 1 0.9251 -3.8628 1.3166 32 1 2.3212 -2.8778 1.8285 33 1 2.2009 -5.1375 -0.1737 34 1 3.4302 -4.7941 1.0714 35 1 2.9643 -3.1730 -1.4806 36 1 4.3236 -4.2880 -1.1882 37 1 8.8060 -2.9943 -0.5584 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:39 Heat of formation + Delta-G solvation = -28.350506 kcal Electronic energy + Delta-G solvation = -18825.191124 eV Core-core repulsion = 16145.989134 eV Total energy + Delta-G solvation = -2679.201990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.68005 -38.64035 -37.25290 -34.21094 -33.69829 -32.32117 -30.13875 -28.96343 -26.90687 -25.86061 -24.31303 -22.08153 -21.72505 -20.83760 -19.15825 -17.90078 -17.19567 -16.74122 -16.34680 -15.91754 -15.39806 -15.21598 -14.74619 -14.29973 -14.12432 -13.98218 -13.61269 -13.38216 -13.29860 -12.93247 -12.86480 -12.56021 -12.49958 -12.24632 -12.15941 -11.94527 -11.73461 -11.49024 -11.21487 -11.04017 -10.85878 -10.36670 -9.14208 -8.96801 -8.21186 -6.06707 0.51245 0.57803 1.32606 1.36899 1.45502 2.37524 2.58564 3.00543 3.11615 3.99519 4.05171 4.10605 4.13455 4.19350 4.30443 4.49816 4.51546 4.56105 4.74799 4.83791 4.87340 4.91610 4.93816 4.93964 5.01437 5.10951 5.21748 5.24356 5.36232 5.42834 5.55224 5.63943 5.70326 5.76187 5.81565 6.03414 6.18753 6.40125 6.71029 6.79370 7.36749 8.93599 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.010653 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.357215 B = 2627.842493 C = 3511.265811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.131 4.131 3 C -0.105 4.105 4 C -0.151 4.151 5 C -0.068 4.068 6 C -0.087 4.087 7 C -0.127 4.127 8 C 0.093 3.907 9 O -0.329 6.329 10 C 0.065 3.935 11 C -0.151 4.151 12 C -0.106 4.106 13 C 0.051 3.949 14 H 0.034 0.966 15 C -0.476 4.476 16 H 0.042 0.958 17 C 0.015 3.985 18 N -0.940 5.940 19 Si 0.914 3.086 20 H -0.273 1.273 21 H -0.236 1.236 22 H -0.294 1.294 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.155 0.845 27 H 0.134 0.866 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.126 0.874 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.229 2.409 5.621 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.123 4.123 4 C -0.169 4.169 5 C -0.068 4.068 6 C -0.143 4.143 7 C -0.128 4.128 8 C 0.049 3.951 9 O -0.245 6.245 10 C -0.009 4.009 11 C -0.189 4.189 12 C -0.144 4.144 13 C 0.032 3.968 14 H 0.052 0.948 15 C -0.514 4.514 16 H 0.060 0.940 17 C -0.181 4.181 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.199 1.199 21 H -0.159 1.159 22 H -0.221 1.221 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.173 0.827 27 H 0.152 0.848 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.193 2.305 5.503 15.396 hybrid contribution 1.278 -0.697 0.302 1.487 sum -12.916 1.608 5.805 14.251 Atomic orbital electron populations 1.20567 0.88743 1.03022 1.02692 1.20131 0.97915 0.90909 1.04153 1.21076 0.93428 0.97704 1.00065 1.21197 0.94977 0.97237 1.03502 1.20076 0.96584 0.92611 0.97565 1.21070 0.91177 1.00769 1.01269 1.20517 0.92801 0.96853 1.02601 1.18590 0.88763 0.86359 1.01386 1.85829 1.57505 1.25469 1.55738 1.23124 1.00234 0.88126 0.89421 1.22485 0.98424 0.98764 0.99226 1.21813 0.97186 0.97267 0.98183 1.18102 0.93304 0.89848 0.95526 0.94799 1.20910 0.91406 1.26178 1.12933 0.94028 1.25551 0.94812 0.98564 0.99200 1.70014 0.98872 1.44359 1.44820 0.86243 0.78825 0.80620 0.80352 1.19878 1.15901 1.22067 0.90627 0.90122 0.91907 0.82706 0.84769 0.94400 0.90030 0.93774 0.85579 0.93058 0.89818 0.91394 0.93214 0.93534 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.21 9.74 71.23 0.69 -1.51 16 2 C -0.13 -4.15 5.90 -19.70 -0.12 -4.27 16 3 C -0.11 -3.12 9.69 22.21 0.22 -2.91 16 4 C -0.15 -5.24 9.68 22.23 0.22 -5.02 16 5 C -0.07 -2.91 5.73 -19.79 -0.11 -3.02 16 6 C -0.09 -4.03 7.95 71.23 0.57 -3.47 16 7 C -0.13 -5.51 5.28 -19.78 -0.10 -5.61 16 8 C 0.09 3.51 5.60 22.47 0.13 3.64 16 9 O -0.33 -11.39 7.76 -90.46 -0.70 -12.09 16 10 C 0.07 1.92 6.52 72.08 0.47 2.39 16 11 C -0.15 -4.93 6.04 30.85 0.19 -4.74 16 12 C -0.11 -4.46 4.69 30.70 0.14 -4.32 16 13 C 0.05 2.35 1.11 -12.35 -0.01 2.33 16 14 H 0.03 1.58 5.33 -2.39 -0.01 1.57 16 15 C -0.48 -25.77 4.73 25.60 0.12 -25.65 16 16 H 0.04 2.55 6.32 -2.91 -0.02 2.53 16 17 C 0.02 0.86 4.51 84.65 0.38 1.24 16 18 N -0.94 -56.29 13.96 21.45 0.30 -55.99 16 19 Si 0.91 42.43 26.69 68.60 1.83 44.26 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.24 -9.93 5.66 99.48 0.56 -9.37 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 25 H 0.06 1.56 7.44 -2.38 -0.02 1.54 16 26 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 28 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 29 H 0.08 4.23 4.70 -2.39 -0.01 4.22 16 30 H 0.04 2.28 6.57 -2.39 -0.02 2.26 16 31 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.05 1.56 7.77 -2.39 -0.02 1.54 16 33 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.07 2.20 6.90 -2.39 -0.02 2.19 16 35 H 0.05 2.15 6.80 -2.39 -0.02 2.14 16 36 H 0.05 2.07 7.82 -2.39 -0.02 2.05 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -62.96 280.08 5.12 -57.84 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.92 Total: 16.90 kcal Atomic # 6 Polarization: -53.69 SS G_CDS: 2.77 Total: -50.92 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.30 Total: -55.99 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.70 Total: -12.09 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.83 Total: 44.26 kcal Total: -62.96 5.12 -57.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.488 kcal (2) G-P(sol) polarization free energy of solvation -62.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds