Wall clock time and date at job start Mon Mar 30 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38292 * 120.07405 * 2 1 4 4 C 1.38027 * 120.01549 * 180.12001 * 3 2 1 5 5 C 1.50698 * 119.78331 * 180.02562 * 4 3 2 6 6 C 1.38741 * 120.42662 * 0.05417 * 4 3 2 7 7 C 1.38142 * 119.60140 * 359.70956 * 6 4 3 8 8 C 1.37954 * 120.07551 * 180.02562 * 2 1 3 9 9 O 1.35724 * 121.83198 * 180.40059 * 7 6 4 10 10 C 1.43037 * 117.78917 * 50.05558 * 9 7 6 11 11 C 1.53297 * 107.90140 * 264.31322 * 10 9 7 12 12 C 1.53480 * 108.12373 * 32.17762 * 11 10 9 13 13 C 1.50669 * 118.17906 * 179.44938 * 6 4 3 14 14 H 1.09004 * 109.20414 * 329.89331 * 13 6 4 15 15 C 1.50703 * 109.20331 * 89.19575 * 13 6 4 16 16 H 1.08001 * 120.00178 * 5.62521 * 15 13 6 17 17 C 1.37883 * 119.99758 * 185.62214 * 15 13 6 18 18 N 1.31516 * 119.99873 * 7.76640 * 17 15 13 19 19 Si 1.86798 * 119.99729 * 187.76452 * 17 15 13 20 20 H 1.48502 * 109.46608 * 84.99278 * 19 17 15 21 21 H 1.48507 * 109.46825 * 204.98861 * 19 17 15 22 22 H 1.48495 * 109.47567 * 324.99101 * 19 17 15 23 23 H 1.09000 * 109.46882 * 269.97647 * 1 2 3 24 24 H 1.08992 * 109.47127 * 29.98087 * 1 2 3 25 25 H 1.09002 * 109.46800 * 149.97610 * 1 2 3 26 26 H 1.07997 * 119.99147 * 0.14801 * 3 2 1 27 27 H 1.08999 * 109.47098 * 96.12305 * 5 4 3 28 28 H 1.09007 * 109.46392 * 216.11604 * 5 4 3 29 29 H 1.08995 * 109.47314 * 336.11390 * 5 4 3 30 30 H 1.07996 * 119.88181 * 359.94131 * 8 2 1 31 31 H 1.08998 * 109.77378 * 144.71306 * 10 9 7 32 32 H 1.09000 * 109.81569 * 23.93278 * 10 9 7 33 33 H 1.08998 * 109.73362 * 151.83368 * 11 10 9 34 34 H 1.08997 * 109.73379 * 272.52073 * 11 10 9 35 35 H 1.09002 * 109.57579 * 178.46874 * 12 11 10 36 36 H 1.08998 * 109.57624 * 298.85726 * 12 11 10 37 37 H 0.96991 * 119.99799 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1968 0.0000 4 6 3.5803 1.1953 -0.0025 5 6 4.3302 2.5025 -0.0019 6 6 4.2817 -0.0017 -0.0062 7 6 3.5904 -1.1977 -0.0012 8 6 2.1983 -1.1938 -0.0005 9 8 4.2304 -2.3945 0.0036 10 6 5.2615 -2.5955 0.9744 11 6 6.6045 -2.2740 0.3089 12 6 6.3706 -1.1671 -0.7283 13 6 5.7872 0.0558 -0.0215 14 1 6.1062 0.9579 -0.5437 15 6 6.2961 0.0988 1.3963 16 1 5.6066 -0.0058 2.2210 17 6 7.6421 0.2716 1.6407 18 7 8.4598 0.5511 0.6493 19 14 8.3039 0.1088 3.3799 20 1 8.5793 -1.3208 3.6728 21 1 9.5599 0.8910 3.5067 22 1 7.2989 0.6266 4.3426 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6611 2.1327 0.0024 27 1 4.6079 2.7616 1.0198 28 1 5.2300 2.4053 -0.6095 29 1 3.6952 3.2858 -0.4157 30 1 1.6577 -2.1287 0.0000 31 1 5.2550 -3.6325 1.3099 32 1 5.1030 -1.9318 1.8245 33 1 7.3147 -1.9297 1.0606 34 1 6.9931 -3.1647 -0.1848 35 1 7.3174 -0.9005 -1.1978 36 1 5.6710 -1.5190 -1.4865 37 1 9.4065 0.6730 0.8213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062571914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:47 Heat of formation + Delta-G solvation = -27.891752 kcal Electronic energy + Delta-G solvation = -18710.603396 eV Core-core repulsion = 16031.421299 eV Total energy + Delta-G solvation = -2679.182097 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.94675 -37.22696 -35.12446 -32.75438 -31.43043 -30.61921 -28.21199 -26.33065 -25.57025 -25.33604 -22.85868 -20.65632 -19.57516 -19.12106 -16.43054 -16.14620 -15.81570 -15.04768 -14.50724 -14.28997 -13.58619 -13.39882 -13.09304 -12.92535 -12.76135 -12.47900 -12.16917 -12.04688 -11.79229 -11.11952 -11.06820 -10.87406 -10.82852 -10.77863 -10.56532 -10.25864 -9.85678 -9.42366 -9.32889 -9.09440 -9.00227 -8.35527 -7.73906 -7.37015 -6.09397 -4.09490 2.03292 2.08579 3.22767 3.31182 3.33843 4.14164 4.35578 4.65983 5.21071 5.31634 5.44778 5.66234 5.76707 5.83697 5.90911 5.94697 6.02589 6.11386 6.13385 6.22348 6.33055 6.37806 6.43761 6.60229 6.73121 6.77524 6.91244 6.92675 7.11118 7.16880 7.30792 7.34748 7.49519 7.62695 7.68419 7.86844 7.90799 8.30021 8.43216 8.89435 9.49057 10.98166 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.008961 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.448373 B = 3123.750881 C = 3564.226964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.064 4.064 5 C -0.107 4.107 6 C -0.086 4.086 7 C 0.116 3.884 8 C -0.155 4.155 9 O -0.335 6.335 10 C 0.069 3.931 11 C -0.122 4.122 12 C -0.095 4.095 13 C 0.071 3.929 14 H 0.053 0.947 15 C -0.502 4.502 16 H 0.054 0.946 17 C 0.069 3.931 18 N -0.882 5.882 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 -1.115 -0.668 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.165 4.165 4 C -0.064 4.064 5 C -0.163 4.163 6 C -0.087 4.087 7 C 0.071 3.929 8 C -0.174 4.174 9 O -0.251 6.251 10 C -0.005 4.005 11 C -0.159 4.159 12 C -0.133 4.133 13 C 0.053 3.947 14 H 0.070 0.930 15 C -0.540 4.540 16 H 0.072 0.928 17 C -0.133 4.133 18 N -0.520 5.520 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.836 -1.227 -0.826 8.959 hybrid contribution 0.618 -0.008 1.162 1.316 sum -8.218 -1.235 0.336 8.317 Atomic orbital electron populations 1.20659 0.91859 1.01933 1.01569 1.19416 0.95131 0.92723 1.02002 1.20680 0.93603 0.96805 1.05448 1.19771 0.92850 0.95261 0.98541 1.20763 0.99816 0.92815 1.02923 1.20697 0.98922 0.91036 0.98044 1.18534 0.90106 0.85048 0.99183 1.20714 0.92388 0.97543 1.06741 1.85794 1.51791 1.31707 1.55816 1.23050 0.86866 0.99531 0.91034 1.22106 0.96723 0.96949 1.00127 1.21480 0.99803 0.95581 0.96482 1.17943 0.84003 0.95759 0.96963 0.92973 1.20894 0.92117 1.50159 0.90851 0.92802 1.24870 0.97065 0.95010 0.96385 1.69952 1.04052 1.47052 1.30928 0.86811 0.78655 0.78377 0.85557 1.20382 1.21183 1.19912 0.91904 0.92113 0.92157 0.87110 0.90992 0.90492 0.93394 0.86686 0.91149 0.90838 0.89178 0.95058 0.92129 0.94924 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.02 36.01 0.36 -0.94 16 2 C -0.09 -1.56 5.87 -104.71 -0.61 -2.17 16 3 C -0.15 -2.59 9.32 -39.64 -0.37 -2.96 16 4 C -0.06 -1.28 5.89 -104.51 -0.62 -1.90 16 5 C -0.11 -1.98 9.43 36.00 0.34 -1.64 16 6 C -0.09 -1.92 4.66 -104.49 -0.49 -2.40 16 7 C 0.12 2.46 5.62 -39.26 -0.22 2.24 16 8 C -0.16 -2.88 9.59 -39.33 -0.38 -3.26 16 9 O -0.34 -7.16 8.84 -18.88 -0.17 -7.33 16 10 C 0.07 1.42 6.43 37.31 0.24 1.66 16 11 C -0.12 -2.67 5.68 -26.33 -0.15 -2.82 16 12 C -0.10 -2.25 4.95 -26.58 -0.13 -2.38 16 13 C 0.07 1.72 1.62 -93.03 -0.15 1.57 16 14 H 0.05 1.36 5.78 -51.93 -0.30 1.06 16 15 C -0.50 -12.73 5.56 -34.44 -0.19 -12.92 16 16 H 0.05 1.41 7.07 -52.49 -0.37 1.04 16 17 C 0.07 1.77 3.68 -17.82 -0.07 1.71 16 18 N -0.88 -23.74 12.52 55.43 0.69 -23.04 16 19 Si 0.88 20.19 29.53 -169.99 -5.02 15.17 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 25 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.11 1.66 8.05 -52.49 -0.42 1.24 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.54 6.03 -51.93 -0.31 1.22 16 29 H 0.05 0.74 8.03 -51.93 -0.42 0.32 16 30 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.60 5.91 -51.93 -0.31 1.29 16 33 H 0.09 2.15 5.58 -51.93 -0.29 1.86 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.51 7.74 -51.93 -0.40 1.11 16 36 H 0.03 0.75 6.80 -51.93 -0.35 0.40 16 37 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -26.99 286.61 -7.87 -34.86 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.26 Total: 2.24 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.43 Total: -26.22 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.69 Total: -23.04 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.17 Total: -7.33 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.99 -7.87 -34.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.966 kcal (2) G-P(sol) polarization free energy of solvation -26.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds