Wall clock time and date at job start Mon Mar 30 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38292 * 120.07405 * 2 1 4 4 C 1.38027 * 120.01549 * 180.12001 * 3 2 1 5 5 C 1.50698 * 119.78331 * 180.02562 * 4 3 2 6 6 C 1.38741 * 120.42662 * 0.05417 * 4 3 2 7 7 C 1.38142 * 119.60140 * 359.70956 * 6 4 3 8 8 C 1.37954 * 120.07551 * 180.02562 * 2 1 3 9 9 O 1.35724 * 121.83198 * 180.40059 * 7 6 4 10 10 C 1.43037 * 117.78917 * 50.05558 * 9 7 6 11 11 C 1.53297 * 107.90140 * 264.31322 * 10 9 7 12 12 C 1.53480 * 108.12373 * 32.17762 * 11 10 9 13 13 C 1.50669 * 118.17906 * 179.44938 * 6 4 3 14 14 H 1.09004 * 109.20414 * 329.89331 * 13 6 4 15 15 C 1.50703 * 109.20331 * 89.19575 * 13 6 4 16 16 H 1.08001 * 120.00178 * 5.62521 * 15 13 6 17 17 C 1.37883 * 119.99758 * 185.62214 * 15 13 6 18 18 N 1.31516 * 119.99873 * 7.76640 * 17 15 13 19 19 Si 1.86798 * 119.99729 * 187.76452 * 17 15 13 20 20 H 1.48502 * 109.46608 * 84.99278 * 19 17 15 21 21 H 1.48507 * 109.46825 * 204.98861 * 19 17 15 22 22 H 1.48495 * 109.47567 * 324.99101 * 19 17 15 23 23 H 1.09000 * 109.46882 * 269.97647 * 1 2 3 24 24 H 1.08992 * 109.47127 * 29.98087 * 1 2 3 25 25 H 1.09002 * 109.46800 * 149.97610 * 1 2 3 26 26 H 1.07997 * 119.99147 * 0.14801 * 3 2 1 27 27 H 1.08999 * 109.47098 * 96.12305 * 5 4 3 28 28 H 1.09007 * 109.46392 * 216.11604 * 5 4 3 29 29 H 1.08995 * 109.47314 * 336.11390 * 5 4 3 30 30 H 1.07996 * 119.88181 * 359.94131 * 8 2 1 31 31 H 1.08998 * 109.77378 * 144.71306 * 10 9 7 32 32 H 1.09000 * 109.81569 * 23.93278 * 10 9 7 33 33 H 1.08998 * 109.73362 * 151.83368 * 11 10 9 34 34 H 1.08997 * 109.73379 * 272.52073 * 11 10 9 35 35 H 1.09002 * 109.57579 * 178.46874 * 12 11 10 36 36 H 1.08998 * 109.57624 * 298.85726 * 12 11 10 37 37 H 0.96991 * 119.99799 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1968 0.0000 4 6 3.5803 1.1953 -0.0025 5 6 4.3302 2.5025 -0.0019 6 6 4.2817 -0.0017 -0.0062 7 6 3.5904 -1.1977 -0.0012 8 6 2.1983 -1.1938 -0.0005 9 8 4.2304 -2.3945 0.0036 10 6 5.2615 -2.5955 0.9744 11 6 6.6045 -2.2740 0.3089 12 6 6.3706 -1.1671 -0.7283 13 6 5.7872 0.0558 -0.0215 14 1 6.1062 0.9579 -0.5437 15 6 6.2961 0.0988 1.3963 16 1 5.6066 -0.0058 2.2210 17 6 7.6421 0.2716 1.6407 18 7 8.4598 0.5511 0.6493 19 14 8.3039 0.1088 3.3799 20 1 8.5793 -1.3208 3.6728 21 1 9.5599 0.8910 3.5067 22 1 7.2989 0.6266 4.3426 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6611 2.1327 0.0024 27 1 4.6079 2.7616 1.0198 28 1 5.2300 2.4053 -0.6095 29 1 3.6952 3.2858 -0.4157 30 1 1.6577 -2.1287 0.0000 31 1 5.2550 -3.6325 1.3099 32 1 5.1030 -1.9318 1.8245 33 1 7.3147 -1.9297 1.0606 34 1 6.9931 -3.1647 -0.1848 35 1 7.3174 -0.9005 -1.1978 36 1 5.6710 -1.5190 -1.4865 37 1 9.4065 0.6730 0.8213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:47 Heat of formation + Delta-G solvation = -41.014926 kcal Electronic energy + Delta-G solvation = -18711.172460 eV Core-core repulsion = 16031.421299 eV Total energy + Delta-G solvation = -2679.751160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53422 -38.74141 -36.88991 -34.28383 -33.27097 -32.19838 -29.68717 -27.80639 -27.33898 -27.02025 -24.50446 -22.20733 -21.15023 -20.84973 -18.34367 -17.71647 -17.40261 -16.83256 -16.14922 -15.98749 -15.13925 -14.88113 -14.73175 -14.41153 -14.20911 -14.10075 -13.76786 -13.41005 -13.08936 -12.85994 -12.77263 -12.58582 -12.39834 -12.27389 -12.16902 -12.10800 -11.58267 -11.17691 -11.14940 -10.85141 -10.78806 -10.33605 -9.22773 -8.94055 -8.08431 -6.14426 0.54068 0.60920 1.38116 1.41866 1.48371 2.41760 2.64456 3.12491 3.19752 4.04712 4.08434 4.25829 4.29682 4.39180 4.46427 4.49600 4.56415 4.65287 4.81432 4.84051 4.87600 4.94741 5.00297 5.02228 5.08783 5.14298 5.23592 5.41388 5.49847 5.56869 5.61698 5.64165 5.75935 5.77507 5.94237 6.10833 6.15396 6.33797 6.81571 6.88934 7.46701 8.97805 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.008961 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.448373 B = 3123.750881 C = 3564.226964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.100 4.100 6 C -0.121 4.121 7 C 0.093 3.907 8 C -0.160 4.160 9 O -0.341 6.341 10 C 0.074 3.926 11 C -0.119 4.119 12 C -0.089 4.089 13 C 0.077 3.923 14 H 0.022 0.978 15 C -0.497 4.497 16 H 0.042 0.958 17 C 0.032 3.968 18 N -0.911 5.911 19 Si 0.930 3.070 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.143 0.857 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 -1.475 -0.015 11.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 C -0.162 4.162 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.122 4.122 7 C 0.049 3.951 8 C -0.179 4.179 9 O -0.257 6.257 10 C 0.000 4.000 11 C -0.157 4.157 12 C -0.127 4.127 13 C 0.059 3.941 14 H 0.040 0.960 15 C -0.535 4.535 16 H 0.060 0.940 17 C -0.168 4.168 18 N -0.550 5.550 19 Si 0.756 3.244 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.153 0.847 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.447 -1.591 -0.169 11.558 hybrid contribution 1.332 0.141 0.916 1.623 sum -10.115 -1.450 0.747 10.245 Atomic orbital electron populations 1.20750 0.88215 1.03711 1.03089 1.19964 0.97636 0.91624 0.98996 1.21043 0.92505 0.98710 1.03972 1.20024 0.94349 0.94826 0.98978 1.20689 0.99436 0.93620 1.01907 1.20618 0.97720 0.92706 1.01153 1.18831 0.91381 0.84528 1.00347 1.21014 0.91251 0.99337 1.06255 1.85775 1.51851 1.31907 1.56184 1.23028 0.85759 1.01122 0.90075 1.22034 0.97546 0.96847 0.99243 1.21369 0.98262 0.96268 0.96824 1.17738 0.86080 0.94432 0.95861 0.96045 1.20941 0.91981 1.49365 0.91215 0.93953 1.25426 0.97272 0.94830 0.99240 1.70063 1.04105 1.48277 1.32581 0.85995 0.77855 0.78599 0.81937 1.19511 1.21267 1.19797 0.90311 0.90147 0.90713 0.83898 0.92148 0.93030 0.89938 0.84665 0.87614 0.92538 0.91247 0.93324 0.94692 0.95069 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.02 71.24 0.71 -1.33 16 2 C -0.08 -2.48 5.87 -19.92 -0.12 -2.59 16 3 C -0.14 -4.67 9.32 22.23 0.21 -4.46 16 4 C -0.08 -3.23 5.89 -19.79 -0.12 -3.35 16 5 C -0.10 -3.73 9.43 71.24 0.67 -3.06 16 6 C -0.12 -5.46 4.66 -19.78 -0.09 -5.55 16 7 C 0.09 3.91 5.62 22.48 0.13 4.04 16 8 C -0.16 -5.57 9.59 22.43 0.22 -5.36 16 9 O -0.34 -14.35 8.84 -90.46 -0.80 -15.15 16 10 C 0.07 3.00 6.43 72.08 0.46 3.46 16 11 C -0.12 -5.30 5.68 30.86 0.18 -5.12 16 12 C -0.09 -4.36 4.95 30.70 0.15 -4.21 16 13 C 0.08 3.87 1.62 -12.36 -0.02 3.85 16 14 H 0.02 1.20 5.78 -2.38 -0.01 1.18 16 15 C -0.50 -25.99 5.56 25.60 0.14 -25.84 16 16 H 0.04 2.28 7.07 -2.91 -0.02 2.26 16 17 C 0.03 1.68 3.68 84.66 0.31 1.99 16 18 N -0.91 -50.83 12.52 21.45 0.27 -50.56 16 19 Si 0.93 41.98 29.53 68.60 2.03 44.01 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 25 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 26 H 0.14 3.66 8.05 -2.91 -0.02 3.63 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 2.16 6.03 -2.38 -0.01 2.15 16 29 H 0.08 2.42 8.03 -2.39 -0.02 2.40 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 32 H 0.06 2.46 5.91 -2.39 -0.01 2.45 16 33 H 0.07 3.37 5.58 -2.39 -0.01 3.36 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.03 1.83 7.74 -2.39 -0.02 1.81 16 36 H 0.03 1.49 6.80 -2.39 -0.02 1.47 16 37 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -59.64 286.61 5.38 -54.26 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.06 Total: 14.98 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 2.83 Total: -47.54 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.27 Total: -50.56 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.80 Total: -15.15 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -59.64 5.38 -54.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.241 kcal (2) G-P(sol) polarization free energy of solvation -59.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds