Wall clock time and date at job start Mon Mar 30 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38302 * 120.07375 * 2 1 4 4 C 1.38029 * 120.01234 * 180.09894 * 3 2 1 5 5 C 1.50694 * 119.78196 * 180.02562 * 4 3 2 6 6 C 1.38741 * 120.43318 * 0.03408 * 4 3 2 7 7 C 1.38142 * 119.59076 * 359.76077 * 6 4 3 8 8 C 1.37953 * 120.07758 * 179.73100 * 2 1 3 9 9 O 1.35739 * 121.81439 * 180.38956 * 7 6 4 10 10 C 1.43035 * 117.80089 * 50.03479 * 9 7 6 11 11 C 1.53300 * 107.89672 * 264.30927 * 10 9 7 12 12 C 1.53474 * 108.12206 * 32.18314 * 11 10 9 13 13 C 1.50658 * 118.17669 * 179.46850 * 6 4 3 14 14 H 1.09005 * 109.20445 * 89.23376 * 13 6 4 15 15 C 1.50700 * 109.20987 * 329.92666 * 13 6 4 16 16 H 1.07998 * 119.99795 * 324.21951 * 15 13 6 17 17 C 1.37877 * 119.99670 * 144.21677 * 15 13 6 18 18 N 1.31512 * 120.00228 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99760 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47082 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47442 * 120.00041 * 19 17 15 22 22 H 1.48503 * 109.47506 * 240.00325 * 19 17 15 23 23 H 1.08999 * 109.47286 * 89.99191 * 1 2 3 24 24 H 1.09008 * 109.46949 * 329.99360 * 1 2 3 25 25 H 1.08999 * 109.46735 * 209.99952 * 1 2 3 26 26 H 1.07991 * 119.99004 * 0.12125 * 3 2 1 27 27 H 1.09002 * 109.47337 * 28.85825 * 5 4 3 28 28 H 1.08995 * 109.47294 * 148.86078 * 5 4 3 29 29 H 1.09001 * 109.47284 * 268.86411 * 5 4 3 30 30 H 1.07999 * 119.87894 * 359.95901 * 8 2 1 31 31 H 1.08999 * 109.77456 * 23.91197 * 10 9 7 32 32 H 1.09004 * 109.77192 * 144.70968 * 10 9 7 33 33 H 1.09004 * 109.73113 * 151.83686 * 11 10 9 34 34 H 1.08998 * 109.73572 * 272.47966 * 11 10 9 35 35 H 1.09000 * 109.57226 * 178.46218 * 12 11 10 36 36 H 1.09000 * 109.57785 * 298.71626 * 12 11 10 37 37 H 0.97010 * 119.99939 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1968 0.0000 4 6 3.5803 1.1954 -0.0021 5 6 4.3302 2.5025 -0.0015 6 6 4.2818 -0.0016 -0.0049 7 6 3.5903 -1.1975 -0.0006 8 6 2.1984 -1.1938 0.0056 9 8 4.2307 -2.3944 0.0048 10 6 5.2612 -2.5952 0.9762 11 6 6.6046 -2.2738 0.3112 12 6 6.3710 -1.1669 -0.7260 13 6 5.7872 0.0560 -0.0193 14 1 6.1547 0.0869 1.0064 15 6 6.2287 1.3033 -0.7407 16 1 5.6675 1.6629 -1.5905 17 6 7.3491 1.9854 -0.3158 18 7 8.0328 1.5472 0.7187 19 14 7.8968 3.5310 -1.2104 20 1 6.9648 3.8101 -2.3324 21 1 7.8916 4.6775 -0.2665 22 1 9.2690 3.3348 -1.7432 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 0.8900 0.5140 25 1 -0.3633 -0.8900 0.5138 26 1 1.6611 2.1327 0.0020 27 1 3.7311 3.2649 0.4964 28 1 5.2747 2.3792 0.5284 29 1 4.5272 2.8088 -1.0288 30 1 1.6577 -2.1286 0.0107 31 1 5.1019 -1.9311 1.8256 32 1 5.2546 -3.6323 1.3117 33 1 7.3145 -1.9295 1.0633 34 1 6.9938 -3.1647 -0.1817 35 1 7.3181 -0.9003 -1.1950 36 1 5.6737 -1.5197 -1.4859 37 1 8.8208 2.0273 1.0178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062571917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:49 Heat of formation + Delta-G solvation = -17.922344 kcal Electronic energy + Delta-G solvation = -18609.893021 eV Core-core repulsion = 15931.143230 eV Total energy + Delta-G solvation = -2678.749791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99095 -37.28221 -35.32552 -32.43987 -32.01476 -30.64780 -28.52477 -26.38887 -25.74702 -24.89373 -22.40784 -20.63554 -19.72398 -19.43985 -16.73626 -16.14030 -15.61984 -15.22349 -14.70920 -14.41009 -13.78061 -13.34744 -13.06857 -12.83565 -12.54079 -12.41261 -12.09727 -11.92812 -11.64705 -11.25005 -11.10686 -10.90524 -10.72078 -10.57728 -10.48061 -10.32881 -10.11467 -9.79702 -9.49447 -9.01985 -8.96633 -8.37113 -7.63071 -7.35681 -6.09534 -3.97644 2.05919 2.11960 3.23966 3.33825 3.37026 4.06445 4.35833 4.57726 5.18590 5.36980 5.47877 5.59152 5.69083 5.72878 5.81764 5.85943 5.88533 6.05057 6.07185 6.19734 6.27227 6.43229 6.50000 6.64114 6.65040 6.80563 6.93943 7.00931 7.09573 7.16158 7.26876 7.30273 7.49633 7.67608 7.74447 7.83443 7.90548 8.26983 8.37021 8.92355 9.47262 10.98759 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.009905 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.845228 B = 2826.279071 C = 3906.196719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.091 4.091 3 C -0.153 4.153 4 C -0.036 4.036 5 C -0.110 4.110 6 C -0.098 4.098 7 C 0.101 3.899 8 C -0.158 4.158 9 O -0.331 6.331 10 C 0.068 3.932 11 C -0.147 4.147 12 C -0.098 4.098 13 C 0.064 3.936 14 H 0.071 0.929 15 C -0.492 4.492 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.891 5.891 19 Si 0.883 3.117 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.019 0.981 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 -3.612 0.831 8.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.091 4.091 3 C -0.171 4.171 4 C -0.037 4.037 5 C -0.166 4.166 6 C -0.099 4.099 7 C 0.057 3.943 8 C -0.177 4.177 9 O -0.247 6.247 10 C -0.007 4.007 11 C -0.185 4.185 12 C -0.136 4.136 13 C 0.046 3.954 14 H 0.089 0.911 15 C -0.531 4.531 16 H 0.081 0.919 17 C -0.144 4.144 18 N -0.530 5.530 19 Si 0.711 3.289 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.038 0.962 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.012 -3.714 0.825 8.870 hybrid contribution 0.493 0.908 -0.384 1.102 sum -7.520 -2.805 0.441 8.038 Atomic orbital electron populations 1.20663 0.91914 1.01892 1.01562 1.19441 0.95101 0.92767 1.01779 1.20809 0.93995 0.96741 1.05581 1.19911 0.92258 0.95978 0.95509 1.21526 1.01533 0.90904 1.02616 1.20910 0.99155 0.90886 0.98949 1.18631 0.90294 0.84716 1.00641 1.20649 0.92248 0.97476 1.07281 1.85851 1.51424 1.32222 1.55225 1.22932 0.87148 1.00259 0.90347 1.22377 0.96301 0.99474 1.00314 1.21767 1.00781 0.94106 0.96943 1.17996 0.84473 0.93967 0.98969 0.91112 1.21089 1.10019 1.08190 1.13769 0.91863 1.24863 0.96651 0.97813 0.95111 1.69910 1.18107 1.39872 1.25100 0.86656 0.78804 0.83460 0.80019 1.19538 1.20845 1.21000 0.91902 0.92087 0.92227 0.87122 0.96242 0.86228 0.91576 0.86793 0.92445 0.90043 0.90952 0.93032 0.91975 0.93531 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.02 36.01 0.36 -0.98 16 2 C -0.09 -1.56 5.87 -104.70 -0.62 -2.18 16 3 C -0.15 -2.84 9.34 -39.63 -0.37 -3.21 16 4 C -0.04 -0.78 5.72 -104.52 -0.60 -1.37 16 5 C -0.11 -2.35 7.95 36.00 0.29 -2.06 16 6 C -0.10 -2.21 5.28 -104.49 -0.55 -2.76 16 7 C 0.10 2.10 5.62 -39.26 -0.22 1.88 16 8 C -0.16 -2.92 9.59 -39.33 -0.38 -3.30 16 9 O -0.33 -6.65 8.84 -18.92 -0.17 -6.81 16 10 C 0.07 1.21 6.52 37.31 0.24 1.45 16 11 C -0.15 -2.81 6.04 -26.33 -0.16 -2.96 16 12 C -0.10 -2.20 5.11 -26.57 -0.14 -2.34 16 13 C 0.06 1.54 1.62 -93.03 -0.15 1.39 16 14 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 15 C -0.49 -12.49 4.18 -34.44 -0.14 -12.64 16 16 H 0.06 1.64 5.99 -52.49 -0.31 1.32 16 17 C 0.06 1.46 4.55 -17.82 -0.08 1.38 16 18 N -0.89 -24.15 12.78 55.43 0.71 -23.44 16 19 Si 0.88 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.71 8.09 -51.92 -0.42 0.29 16 25 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 28 H 0.12 2.88 4.75 -51.93 -0.25 2.63 16 29 H 0.07 1.43 6.53 -51.93 -0.34 1.09 16 30 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.06 1.05 7.77 -51.93 -0.40 0.64 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.49 7.82 -51.93 -0.41 1.08 16 36 H 0.05 1.06 6.81 -51.93 -0.35 0.71 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -27.00 287.67 -8.01 -35.01 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.35 Total: 3.32 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -2.51 Total: -27.69 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.71 Total: -23.44 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.17 Total: -6.81 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.00 -8.01 -35.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.088 kcal (2) G-P(sol) polarization free energy of solvation -27.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds