Wall clock time and date at job start Mon Mar 30 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38302 * 120.07375 * 2 1 4 4 C 1.38029 * 120.01234 * 180.09894 * 3 2 1 5 5 C 1.50694 * 119.78196 * 180.02562 * 4 3 2 6 6 C 1.38741 * 120.43318 * 0.03408 * 4 3 2 7 7 C 1.38142 * 119.59076 * 359.76077 * 6 4 3 8 8 C 1.37953 * 120.07758 * 179.73100 * 2 1 3 9 9 O 1.35739 * 121.81439 * 180.38956 * 7 6 4 10 10 C 1.43035 * 117.80089 * 50.03479 * 9 7 6 11 11 C 1.53300 * 107.89672 * 264.30927 * 10 9 7 12 12 C 1.53474 * 108.12206 * 32.18314 * 11 10 9 13 13 C 1.50658 * 118.17669 * 179.46850 * 6 4 3 14 14 H 1.09005 * 109.20445 * 89.23376 * 13 6 4 15 15 C 1.50700 * 109.20987 * 329.92666 * 13 6 4 16 16 H 1.07998 * 119.99795 * 324.21951 * 15 13 6 17 17 C 1.37877 * 119.99670 * 144.21677 * 15 13 6 18 18 N 1.31512 * 120.00228 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99760 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47082 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47442 * 120.00041 * 19 17 15 22 22 H 1.48503 * 109.47506 * 240.00325 * 19 17 15 23 23 H 1.08999 * 109.47286 * 89.99191 * 1 2 3 24 24 H 1.09008 * 109.46949 * 329.99360 * 1 2 3 25 25 H 1.08999 * 109.46735 * 209.99952 * 1 2 3 26 26 H 1.07991 * 119.99004 * 0.12125 * 3 2 1 27 27 H 1.09002 * 109.47337 * 28.85825 * 5 4 3 28 28 H 1.08995 * 109.47294 * 148.86078 * 5 4 3 29 29 H 1.09001 * 109.47284 * 268.86411 * 5 4 3 30 30 H 1.07999 * 119.87894 * 359.95901 * 8 2 1 31 31 H 1.08999 * 109.77456 * 23.91197 * 10 9 7 32 32 H 1.09004 * 109.77192 * 144.70968 * 10 9 7 33 33 H 1.09004 * 109.73113 * 151.83686 * 11 10 9 34 34 H 1.08998 * 109.73572 * 272.47966 * 11 10 9 35 35 H 1.09000 * 109.57226 * 178.46218 * 12 11 10 36 36 H 1.09000 * 109.57785 * 298.71626 * 12 11 10 37 37 H 0.97010 * 119.99939 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1968 0.0000 4 6 3.5803 1.1954 -0.0021 5 6 4.3302 2.5025 -0.0015 6 6 4.2818 -0.0016 -0.0049 7 6 3.5903 -1.1975 -0.0006 8 6 2.1984 -1.1938 0.0056 9 8 4.2307 -2.3944 0.0048 10 6 5.2612 -2.5952 0.9762 11 6 6.6046 -2.2738 0.3112 12 6 6.3710 -1.1669 -0.7260 13 6 5.7872 0.0560 -0.0193 14 1 6.1547 0.0869 1.0064 15 6 6.2287 1.3033 -0.7407 16 1 5.6675 1.6629 -1.5905 17 6 7.3491 1.9854 -0.3158 18 7 8.0328 1.5472 0.7187 19 14 7.8968 3.5310 -1.2104 20 1 6.9648 3.8101 -2.3324 21 1 7.8916 4.6775 -0.2665 22 1 9.2690 3.3348 -1.7432 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 0.8900 0.5140 25 1 -0.3633 -0.8900 0.5138 26 1 1.6611 2.1327 0.0020 27 1 3.7311 3.2649 0.4964 28 1 5.2747 2.3792 0.5284 29 1 4.5272 2.8088 -1.0288 30 1 1.6577 -2.1286 0.0107 31 1 5.1019 -1.9311 1.8256 32 1 5.2546 -3.6323 1.3117 33 1 7.3145 -1.9295 1.0633 34 1 6.9938 -3.1647 -0.1817 35 1 7.3181 -0.9003 -1.1950 36 1 5.6737 -1.5197 -1.4859 37 1 8.8208 2.0273 1.0178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:49 Heat of formation + Delta-G solvation = -31.099568 kcal Electronic energy + Delta-G solvation = -18610.464428 eV Core-core repulsion = 15931.143230 eV Total energy + Delta-G solvation = -2679.321198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.55343 -38.77286 -37.05060 -34.00879 -33.80863 -32.21564 -30.07326 -28.00423 -27.22881 -26.59173 -24.09665 -22.20597 -21.31580 -21.04876 -18.65176 -17.65510 -17.24547 -16.83690 -16.39713 -16.06235 -15.27163 -14.82033 -14.56789 -14.30747 -14.15951 -14.09787 -13.53836 -13.47419 -13.03782 -12.97926 -12.83270 -12.48086 -12.36325 -12.27399 -12.10683 -11.97356 -11.92834 -11.40489 -11.13989 -10.84070 -10.70331 -10.34999 -9.16734 -8.94283 -8.09055 -6.00786 0.54309 0.60992 1.37650 1.42529 1.51289 2.43132 2.59156 3.04420 3.19970 4.06820 4.11488 4.14791 4.18826 4.28163 4.36869 4.48332 4.56449 4.64320 4.73923 4.90371 4.93032 4.94888 4.98705 5.08821 5.12539 5.16213 5.26643 5.28794 5.41519 5.51084 5.69083 5.70457 5.76122 5.83482 5.86646 6.07852 6.21628 6.41422 6.75433 6.92048 7.45302 8.99209 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.009905 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.845228 B = 2826.279071 C = 3906.196719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.079 4.079 3 C -0.154 4.154 4 C -0.060 4.060 5 C -0.101 4.101 6 C -0.134 4.134 7 C 0.089 3.911 8 C -0.161 4.161 9 O -0.337 6.337 10 C 0.070 3.930 11 C -0.141 4.141 12 C -0.093 4.093 13 C 0.070 3.930 14 H 0.036 0.964 15 C -0.487 4.487 16 H 0.054 0.946 17 C 0.016 3.984 18 N -0.923 5.923 19 Si 0.934 3.066 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.286 1.286 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.046 0.954 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.040 0.960 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 -4.139 0.629 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.079 4.079 3 C -0.172 4.172 4 C -0.060 4.060 5 C -0.157 4.157 6 C -0.135 4.135 7 C 0.046 3.954 8 C -0.179 4.179 9 O -0.254 6.254 10 C -0.004 4.004 11 C -0.179 4.179 12 C -0.131 4.131 13 C 0.052 3.948 14 H 0.054 0.946 15 C -0.526 4.526 16 H 0.072 0.928 17 C -0.182 4.182 18 N -0.564 5.564 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.212 1.212 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.154 0.846 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.586 -4.239 0.615 11.420 hybrid contribution 1.194 1.045 -0.323 1.619 sum -9.391 -3.195 0.292 9.924 Atomic orbital electron populations 1.20755 0.88230 1.03693 1.03105 1.19970 0.97626 0.91607 0.98714 1.21091 0.92821 0.98647 1.04683 1.20046 0.93791 0.95271 0.96862 1.21268 1.00566 0.92158 1.01731 1.20826 0.98108 0.92472 1.02085 1.18866 0.91469 0.84291 1.00811 1.20988 0.91244 0.99205 1.06498 1.85828 1.51758 1.31798 1.55983 1.23062 0.85626 1.02380 0.89327 1.22301 0.97352 0.99022 0.99234 1.21613 0.98971 0.95011 0.97547 1.17801 0.86274 0.93951 0.96806 0.94572 1.21197 1.09566 1.08679 1.13134 0.92789 1.25414 0.96857 1.00161 0.95732 1.70020 1.18653 1.41138 1.26567 0.85847 0.78152 0.80768 0.79182 1.18989 1.20412 1.21202 0.90285 0.90419 0.90437 0.84593 0.93785 0.89563 0.92505 0.84331 0.93542 0.85839 0.92116 0.90619 0.94620 0.94113 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 10.02 71.24 0.71 -1.40 16 2 C -0.08 -2.45 5.87 -19.92 -0.12 -2.57 16 3 C -0.15 -5.37 9.34 22.24 0.21 -5.17 16 4 C -0.06 -2.53 5.72 -19.80 -0.11 -2.64 16 5 C -0.10 -4.37 7.95 71.23 0.57 -3.80 16 6 C -0.13 -6.11 5.28 -19.78 -0.10 -6.22 16 7 C 0.09 3.66 5.62 22.48 0.13 3.78 16 8 C -0.16 -5.52 9.59 22.43 0.22 -5.30 16 9 O -0.34 -13.15 8.84 -90.63 -0.80 -13.95 16 10 C 0.07 2.44 6.52 72.08 0.47 2.91 16 11 C -0.14 -5.43 6.04 30.85 0.19 -5.24 16 12 C -0.09 -4.35 5.11 30.70 0.16 -4.19 16 13 C 0.07 3.51 1.62 -12.35 -0.02 3.49 16 14 H 0.04 2.04 6.91 -2.38 -0.02 2.02 16 15 C -0.49 -25.75 4.18 25.60 0.11 -25.64 16 16 H 0.05 2.90 5.99 -2.91 -0.02 2.88 16 17 C 0.02 0.86 4.55 84.66 0.38 1.24 16 18 N -0.92 -52.22 12.78 21.45 0.27 -51.94 16 19 Si 0.93 42.69 29.54 68.60 2.03 44.72 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 1.40 8.09 -2.38 -0.02 1.39 16 25 H 0.08 1.38 8.08 -2.39 -0.02 1.37 16 26 H 0.14 3.96 8.06 -2.92 -0.02 3.94 16 27 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 28 H 0.09 4.31 4.75 -2.39 -0.01 4.30 16 29 H 0.06 2.49 6.53 -2.39 -0.02 2.47 16 30 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.05 1.70 7.77 -2.39 -0.02 1.68 16 32 H 0.12 3.24 8.14 -2.39 -0.02 3.23 16 33 H 0.06 2.46 8.11 -2.38 -0.02 2.44 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 1.79 7.82 -2.39 -0.02 1.77 16 36 H 0.04 1.90 6.81 -2.39 -0.02 1.89 16 37 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -60.24 287.67 5.33 -54.90 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.05 Total: 17.04 kcal Atomic # 6 Polarization: -53.55 SS G_CDS: 2.78 Total: -50.77 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.27 Total: -51.94 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.80 Total: -13.95 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -60.24 5.33 -54.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.805 kcal (2) G-P(sol) polarization free energy of solvation -60.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds