Wall clock time and date at job start Mon Mar 30 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20763 * 120.00124 * 2 1 4 4 C 1.50701 * 119.99878 * 179.71634 * 2 1 3 5 5 C 1.52996 * 109.46972 * 180.27426 * 4 2 1 6 6 C 1.52998 * 109.47419 * 300.27755 * 4 2 1 7 7 C 1.50701 * 109.47204 * 299.99887 * 6 4 2 8 8 H 1.07994 * 119.99644 * 0.02562 * 7 6 4 9 9 C 1.37875 * 119.99823 * 179.97438 * 7 6 4 10 10 N 1.31511 * 119.99753 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00106 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47213 * 89.99758 * 11 9 7 13 13 H 1.48498 * 109.47321 * 209.99426 * 11 9 7 14 14 H 1.48497 * 109.47198 * 329.99489 * 11 9 7 15 15 C 1.50701 * 109.46840 * 60.27865 * 4 2 1 16 16 C 1.38234 * 120.00171 * 239.72315 * 15 4 2 17 17 C 1.38232 * 120.00109 * 179.74565 * 16 15 4 18 18 C 1.38237 * 119.99979 * 0.55207 * 17 16 15 19 19 C 1.50698 * 120.00303 * 179.72780 * 18 17 16 20 20 C 1.38242 * 119.99906 * 359.70269 * 18 17 16 21 21 C 1.38233 * 119.99766 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 120.00463 * 1 2 3 24 24 H 1.08994 * 109.46990 * 240.00317 * 1 2 3 25 25 H 1.09006 * 109.46938 * 60.00809 * 5 4 2 26 26 H 1.09005 * 109.47129 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47764 * 300.00587 * 5 4 2 28 28 H 1.09004 * 109.46783 * 60.00191 * 6 4 2 29 29 H 1.08996 * 109.47009 * 179.97438 * 6 4 2 30 30 H 0.97003 * 119.99760 * 180.02562 * 10 9 7 31 31 H 1.07999 * 119.99779 * 359.97438 * 16 15 4 32 32 H 1.08003 * 120.00262 * 180.27425 * 17 16 15 33 33 H 1.09000 * 109.46822 * 269.98055 * 19 18 17 34 34 H 1.09004 * 109.47074 * 29.97009 * 19 18 17 35 35 H 1.08993 * 109.47424 * 149.97858 * 19 18 17 36 36 H 1.08003 * 119.99914 * 180.02562 * 20 18 17 37 37 H 1.08003 * 119.99972 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0065 5 6 3.7647 -1.0255 0.0120 6 6 1.8857 -2.1043 1.2561 7 6 2.2446 -1.3110 2.4861 8 1 2.6946 -0.3344 2.3865 9 6 1.9975 -1.8317 3.7387 10 7 2.3112 -1.1396 4.8120 11 14 1.2185 -3.5207 3.9109 12 1 2.2837 -4.5541 3.9639 13 1 0.4173 -3.5713 5.1603 14 1 0.3351 -3.7796 2.7457 15 6 1.9016 -2.0984 -1.2236 16 6 1.3303 -3.3507 -1.0961 17 6 0.9962 -4.0761 -2.2243 18 6 1.2439 -3.5541 -3.4801 19 6 0.8853 -4.3475 -4.7102 20 6 1.8201 -2.3039 -3.6077 21 6 2.1489 -1.5762 -2.4794 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5139 -0.8900 24 1 -0.3633 -0.5138 0.8900 25 1 4.0243 -0.4517 0.9017 26 1 4.3097 -1.9695 0.0162 27 1 4.0318 -0.4561 -0.8783 28 1 0.8140 -2.3035 1.2521 29 1 2.4303 -3.0484 1.2605 30 1 2.1377 -1.5061 5.6932 31 1 1.1415 -3.7607 -0.1149 32 1 0.5458 -5.0527 -2.1247 33 1 1.7324 -4.9685 -5.0015 34 1 0.0261 -4.9828 -4.4950 35 1 0.6383 -3.6652 -5.5234 36 1 2.0132 -1.8959 -4.5888 37 1 2.5995 -0.5997 -2.5790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075625566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:26 Heat of formation + Delta-G solvation = -31.201440 kcal Electronic energy + Delta-G solvation = -18074.041257 eV Core-core repulsion = 15394.715642 eV Total energy + Delta-G solvation = -2679.325616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05558 -38.36604 -35.28685 -32.69264 -31.24684 -30.80432 -29.48849 -27.82172 -26.39394 -23.71397 -22.69992 -21.24691 -20.80854 -18.06387 -17.04966 -15.82140 -15.44338 -14.98662 -14.56655 -14.36080 -14.11299 -13.91133 -13.69045 -13.20109 -13.06745 -12.58951 -12.27675 -12.06635 -11.95647 -11.74425 -11.53276 -11.39416 -11.22563 -11.15516 -10.81979 -10.69885 -10.51140 -9.84754 -9.69939 -9.28544 -8.88238 -8.71108 -8.59921 -8.13705 -6.10360 -4.10400 1.53516 1.62262 2.76109 3.24391 3.31769 3.32789 3.94450 4.36884 4.80784 4.93704 4.99866 5.16646 5.22303 5.26763 5.37710 5.54552 5.63139 5.70975 5.75953 5.79142 5.88922 5.93451 6.00019 6.17162 6.27808 6.32696 6.46441 6.56622 6.61304 6.67679 6.75762 6.93704 7.02137 7.09756 7.12732 7.23770 7.66051 8.25991 8.44381 8.96007 9.49720 11.02434 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.007909 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.134101 B = 3539.462554 C = 4243.151957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.394 3.606 3 O -0.470 6.470 4 C -0.060 4.060 5 C -0.117 4.117 6 C 0.002 3.998 7 C -0.527 4.527 8 H 0.079 0.921 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.264 1.264 15 C -0.061 4.061 16 C -0.108 4.108 17 C -0.121 4.121 18 C -0.100 4.100 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.116 4.116 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 -5.850 -15.711 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.271 3.729 3 O -0.344 6.344 4 C -0.061 4.061 5 C -0.174 4.174 6 C -0.035 4.035 7 C -0.564 4.564 8 H 0.097 0.903 9 C -0.130 4.130 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.189 1.189 15 C -0.061 4.061 16 C -0.126 4.126 17 C -0.139 4.139 18 C -0.100 4.100 19 C -0.167 4.167 20 C -0.139 4.139 21 C -0.134 4.134 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.118 0.882 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.688 -5.289 -15.510 16.797 hybrid contribution -0.424 -1.022 0.386 1.172 sum -4.111 -6.311 -15.125 16.897 Atomic orbital electron populations 1.22267 0.95439 1.03846 1.04335 1.24132 0.91328 0.89380 0.68084 1.90311 1.72128 1.34961 1.36978 1.20127 0.97172 0.94423 0.94345 1.21612 0.92448 1.01117 1.02183 1.19713 0.96778 0.95474 0.91556 1.21128 1.41651 1.04885 0.88759 0.90340 1.24981 0.94998 0.97151 0.95837 1.69911 1.47608 1.37894 0.97963 0.86895 0.80038 0.85213 0.77895 1.20149 1.21269 1.18862 1.19849 0.97523 0.94824 0.93876 1.21330 0.97821 0.94249 0.99191 1.21012 1.01174 0.99758 0.91951 1.19846 0.99953 0.95310 0.94939 1.20740 1.01359 0.99385 0.95205 1.20911 1.00256 0.94589 0.98153 1.21059 1.00236 1.00056 0.92090 0.90879 0.90091 0.88200 0.90355 0.92885 0.93967 0.95613 0.95619 0.92610 0.84995 0.86393 0.91564 0.91835 0.91906 0.86533 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.45 9.69 36.01 0.35 -3.10 16 2 C 0.39 8.04 4.76 -29.03 -0.14 7.90 16 3 O -0.47 -10.77 16.71 6.00 0.10 -10.67 16 4 C -0.06 -1.18 0.48 -156.81 -0.07 -1.25 16 5 C -0.12 -2.32 7.32 37.16 0.27 -2.05 16 6 C 0.00 0.04 1.55 -27.88 -0.04 0.00 16 7 C -0.53 -14.26 8.35 -34.44 -0.29 -14.55 16 8 H 0.08 2.38 6.64 -52.49 -0.35 2.03 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 11 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 15 C -0.06 -1.02 4.29 -104.62 -0.45 -1.47 16 16 C -0.11 -1.71 8.98 -39.58 -0.36 -2.07 16 17 C -0.12 -1.63 9.70 -39.58 -0.38 -2.01 16 18 C -0.10 -1.25 5.88 -104.62 -0.62 -1.87 16 19 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 20 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 21 C -0.12 -1.76 8.82 -39.58 -0.35 -2.11 16 22 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 23 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 24 H 0.10 1.76 7.36 -51.93 -0.38 1.38 16 25 H 0.08 1.78 6.58 -51.93 -0.34 1.43 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.76 7.35 -51.93 -0.38 0.38 16 28 H 0.03 0.56 5.71 -51.93 -0.30 0.26 16 29 H 0.03 0.57 6.93 -51.93 -0.36 0.21 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.13 2.16 5.89 -52.49 -0.31 1.85 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.12 1.77 7.58 -52.48 -0.40 1.37 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -30.58 300.81 -6.80 -37.38 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.35 Total: 2.28 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -2.20 Total: -23.25 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.77 Total: -26.20 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.10 Total: -10.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.58 -6.80 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075625566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.181 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds