Wall clock time and date at job start Mon Mar 30 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20763 * 120.00124 * 2 1 4 4 C 1.50701 * 119.99878 * 179.71634 * 2 1 3 5 5 C 1.52996 * 109.46972 * 180.27426 * 4 2 1 6 6 C 1.52998 * 109.47419 * 300.27755 * 4 2 1 7 7 C 1.50701 * 109.47204 * 299.99887 * 6 4 2 8 8 H 1.07994 * 119.99644 * 0.02562 * 7 6 4 9 9 C 1.37875 * 119.99823 * 179.97438 * 7 6 4 10 10 N 1.31511 * 119.99753 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00106 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47213 * 89.99758 * 11 9 7 13 13 H 1.48498 * 109.47321 * 209.99426 * 11 9 7 14 14 H 1.48497 * 109.47198 * 329.99489 * 11 9 7 15 15 C 1.50701 * 109.46840 * 60.27865 * 4 2 1 16 16 C 1.38234 * 120.00171 * 239.72315 * 15 4 2 17 17 C 1.38232 * 120.00109 * 179.74565 * 16 15 4 18 18 C 1.38237 * 119.99979 * 0.55207 * 17 16 15 19 19 C 1.50698 * 120.00303 * 179.72780 * 18 17 16 20 20 C 1.38242 * 119.99906 * 359.70269 * 18 17 16 21 21 C 1.38233 * 119.99766 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 120.00463 * 1 2 3 24 24 H 1.08994 * 109.46990 * 240.00317 * 1 2 3 25 25 H 1.09006 * 109.46938 * 60.00809 * 5 4 2 26 26 H 1.09005 * 109.47129 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47764 * 300.00587 * 5 4 2 28 28 H 1.09004 * 109.46783 * 60.00191 * 6 4 2 29 29 H 1.08996 * 109.47009 * 179.97438 * 6 4 2 30 30 H 0.97003 * 119.99760 * 180.02562 * 10 9 7 31 31 H 1.07999 * 119.99779 * 359.97438 * 16 15 4 32 32 H 1.08003 * 120.00262 * 180.27425 * 17 16 15 33 33 H 1.09000 * 109.46822 * 269.98055 * 19 18 17 34 34 H 1.09004 * 109.47074 * 29.97009 * 19 18 17 35 35 H 1.08993 * 109.47424 * 149.97858 * 19 18 17 36 36 H 1.08003 * 119.99914 * 180.02562 * 20 18 17 37 37 H 1.08003 * 119.99972 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0065 5 6 3.7647 -1.0255 0.0120 6 6 1.8857 -2.1043 1.2561 7 6 2.2446 -1.3110 2.4861 8 1 2.6946 -0.3344 2.3865 9 6 1.9975 -1.8317 3.7387 10 7 2.3112 -1.1396 4.8120 11 14 1.2185 -3.5207 3.9109 12 1 2.2837 -4.5541 3.9639 13 1 0.4173 -3.5713 5.1603 14 1 0.3351 -3.7796 2.7457 15 6 1.9016 -2.0984 -1.2236 16 6 1.3303 -3.3507 -1.0961 17 6 0.9962 -4.0761 -2.2243 18 6 1.2439 -3.5541 -3.4801 19 6 0.8853 -4.3475 -4.7102 20 6 1.8201 -2.3039 -3.6077 21 6 2.1489 -1.5762 -2.4794 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5139 -0.8900 24 1 -0.3633 -0.5138 0.8900 25 1 4.0243 -0.4517 0.9017 26 1 4.3097 -1.9695 0.0162 27 1 4.0318 -0.4561 -0.8783 28 1 0.8140 -2.3035 1.2521 29 1 2.4303 -3.0484 1.2605 30 1 2.1377 -1.5061 5.6932 31 1 1.1415 -3.7607 -0.1149 32 1 0.5458 -5.0527 -2.1247 33 1 1.7324 -4.9685 -5.0015 34 1 0.0261 -4.9828 -4.4950 35 1 0.6383 -3.6652 -5.5234 36 1 2.0132 -1.8959 -4.5888 37 1 2.5995 -0.5997 -2.5790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075625566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:25 Heat of formation + Delta-G solvation = -48.196285 kcal Electronic energy + Delta-G solvation = -18074.778209 eV Core-core repulsion = 15394.715642 eV Total energy + Delta-G solvation = -2680.062567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46516 -39.71120 -36.83476 -34.59396 -32.55334 -31.90007 -30.97035 -29.60880 -27.51034 -25.34777 -24.05476 -22.69192 -22.03389 -19.63101 -18.94582 -17.31632 -16.88948 -16.32787 -16.07232 -15.87176 -15.64840 -15.34269 -14.77622 -14.47033 -14.32711 -14.23795 -13.62577 -13.48598 -13.24403 -12.95819 -12.91321 -12.88512 -12.78300 -12.64092 -12.48584 -12.06026 -11.90686 -11.68958 -11.32990 -11.19995 -10.78088 -10.44942 -9.77344 -9.29386 -8.26320 -6.31928 0.44111 0.54953 1.15248 1.38265 1.40068 1.50440 2.37129 2.84223 3.08960 3.32291 3.76151 3.97785 4.10064 4.15965 4.20559 4.25504 4.38333 4.58340 4.63676 4.64530 4.69919 4.87074 4.92439 4.93277 4.97955 5.03045 5.04959 5.24296 5.26123 5.31349 5.35988 5.36386 5.51110 5.68922 5.76237 5.80722 6.17790 6.28011 6.65320 6.77390 7.31962 8.90491 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.007909 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.134101 B = 3539.462554 C = 4243.151957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.385 3.615 3 O -0.508 6.508 4 C -0.058 4.058 5 C -0.112 4.112 6 C 0.011 3.989 7 C -0.526 4.526 8 H 0.027 0.973 9 C 0.008 3.992 10 N -0.951 5.951 11 Si 0.943 3.057 12 H -0.269 1.269 13 H -0.288 1.288 14 H -0.230 1.230 15 C -0.078 4.078 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.093 4.093 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.125 4.125 22 H 0.080 0.920 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -8.783 -18.620 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.264 3.736 3 O -0.385 6.385 4 C -0.059 4.059 5 C -0.169 4.169 6 C -0.026 4.026 7 C -0.564 4.564 8 H 0.046 0.954 9 C -0.189 4.189 10 N -0.592 5.592 11 Si 0.765 3.235 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.153 1.153 15 C -0.078 4.078 16 C -0.138 4.138 17 C -0.137 4.137 18 C -0.093 4.093 19 C -0.166 4.166 20 C -0.137 4.137 21 C -0.143 4.143 22 H 0.099 0.901 23 H 0.130 0.870 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.521 -8.232 -18.452 20.946 hybrid contribution 0.206 -0.047 1.206 1.225 sum -5.315 -8.279 -17.246 19.855 Atomic orbital electron populations 1.22258 0.92738 1.04882 1.05457 1.24767 0.93098 0.89153 0.66580 1.90291 1.73194 1.36155 1.38855 1.19997 0.96423 0.94393 0.95100 1.21527 0.93680 1.00992 1.00716 1.19601 0.97546 0.95155 0.90346 1.21339 1.40516 1.03416 0.91102 0.95431 1.25982 0.95740 1.01957 0.95224 1.70092 1.49864 1.40501 0.98712 0.85772 0.79581 0.79209 0.78893 1.19393 1.21404 1.15308 1.19526 1.00110 0.95398 0.92802 1.21327 0.98565 0.94022 0.99911 1.21294 1.00475 1.00481 0.91465 1.20276 0.98023 0.95027 0.95984 1.20817 1.02333 0.99576 0.93868 1.21209 0.99318 0.94673 0.98457 1.21064 1.00737 1.00202 0.92279 0.90060 0.87043 0.88586 0.94457 0.92015 0.92726 0.94060 0.94832 0.92602 0.85711 0.83864 0.90396 0.90510 0.90550 0.83983 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.54 9.69 71.24 0.69 -5.85 16 2 C 0.38 15.98 4.76 29.10 0.14 16.12 16 3 O -0.51 -24.41 16.71 -1.46 -0.02 -24.43 16 4 C -0.06 -2.31 0.48 -53.68 -0.03 -2.34 16 5 C -0.11 -4.65 7.32 71.98 0.53 -4.12 16 6 C 0.01 0.47 1.55 29.85 0.05 0.52 16 7 C -0.53 -29.55 8.35 25.60 0.21 -29.33 16 8 H 0.03 1.79 6.64 -2.91 -0.02 1.77 16 9 C 0.01 0.45 5.47 84.65 0.46 0.91 16 10 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 11 Si 0.94 42.11 27.47 68.60 1.88 43.99 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.23 -8.97 6.54 99.48 0.65 -8.32 16 15 C -0.08 -2.51 4.29 -19.86 -0.09 -2.60 16 16 C -0.12 -3.47 8.98 22.27 0.20 -3.27 16 17 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 18 C -0.09 -1.90 5.88 -19.86 -0.12 -2.01 16 19 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 20 C -0.12 -2.66 9.70 22.27 0.22 -2.44 16 21 C -0.12 -3.53 8.82 22.27 0.20 -3.33 16 22 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 23 H 0.11 3.01 7.89 -2.38 -0.02 2.99 16 24 H 0.10 3.29 7.36 -2.39 -0.02 3.28 16 25 H 0.04 1.81 6.58 -2.38 -0.02 1.80 16 26 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.05 2.06 7.35 -2.39 -0.02 2.04 16 28 H 0.04 1.70 5.71 -2.38 -0.01 1.69 16 29 H 0.03 1.44 6.93 -2.39 -0.02 1.42 16 30 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.13 3.71 5.89 -2.91 -0.02 3.70 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.11 3.24 7.58 -2.91 -0.02 3.22 16 Total: -1.00 -69.85 300.81 6.54 -63.30 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.99 Total: 17.49 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.39 Total: -40.96 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.30 Total: -59.39 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.02 Total: -24.43 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 43.99 kcal Total: -69.85 6.54 -63.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075625566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.105 kcal (2) G-P(sol) polarization free energy of solvation -69.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds