Wall clock time and date at job start Mon Mar 30 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00088 * 2 1 4 4 C 1.38476 * 119.78312 * 0.22949 * 3 2 1 5 5 C 1.38135 * 119.71164 * 179.97438 * 4 3 2 6 6 C 1.38008 * 119.82818 * 359.79716 * 5 4 3 7 7 C 1.50702 * 119.66533 * 179.97438 * 6 5 4 8 8 C 1.38915 * 120.66261 * 0.02562 * 6 5 4 9 9 C 1.37610 * 119.72273 * 0.16560 * 8 6 5 10 10 C 1.50622 * 122.59493 * 179.57107 * 9 8 6 11 11 C 1.52723 * 110.60066 * 17.54533 * 10 9 8 12 12 C 1.53333 * 108.39259 * 309.01269 * 11 10 9 13 13 C 1.50643 * 117.72321 * 180.24843 * 8 6 5 14 14 H 1.09006 * 109.25704 * 77.39587 * 13 8 6 15 15 C 1.50700 * 109.25741 * 317.92533 * 13 8 6 16 16 H 1.08002 * 119.99695 * 327.43880 * 15 13 8 17 17 C 1.37870 * 120.00208 * 147.43548 * 15 13 8 18 18 N 1.31517 * 120.00118 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00125 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47101 * 60.00133 * 19 17 15 21 21 H 1.48503 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47313 * 300.00193 * 19 17 15 23 23 H 1.08997 * 109.47522 * 60.00076 * 1 2 3 24 24 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47171 * 299.99456 * 1 2 3 26 26 H 1.08000 * 120.14556 * 359.88354 * 4 3 2 27 27 H 1.07992 * 120.08830 * 179.81002 * 5 4 3 28 28 H 1.08994 * 109.46690 * 264.34712 * 7 6 5 29 29 H 1.09000 * 109.47242 * 24.35140 * 7 6 5 30 30 H 1.09002 * 109.46720 * 144.35092 * 7 6 5 31 31 H 1.09001 * 109.24964 * 137.83312 * 10 9 8 32 32 H 1.08994 * 109.24991 * 257.25259 * 10 9 8 33 33 H 1.09008 * 109.68132 * 189.28602 * 11 10 9 34 34 H 1.09000 * 109.70352 * 68.75617 * 11 10 9 35 35 H 1.08993 * 109.69174 * 310.16435 * 12 11 10 36 36 H 1.09008 * 109.71461 * 189.61988 * 12 11 10 37 37 H 0.97006 * 120.00294 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2874 2.3693 0.0048 5 6 1.9161 3.5993 0.0053 6 6 3.2946 3.6657 0.0053 7 6 3.9766 5.0095 0.0053 8 6 4.0596 2.5062 0.0042 9 6 3.4379 1.2786 -0.0003 10 6 4.2034 -0.0186 -0.0112 11 6 5.6523 0.2089 0.4148 12 6 6.2294 1.3544 -0.4253 13 6 5.5586 2.6557 0.0100 14 1 5.8905 2.9115 1.0163 15 6 5.9518 3.7589 -0.9383 16 1 5.3684 3.9386 -1.8292 17 6 7.0561 4.5390 -0.6685 18 7 7.7662 4.3206 0.4168 19 14 7.5439 5.9061 -1.8444 20 1 6.4320 6.8843 -1.9547 21 1 8.7574 6.5910 -1.3310 22 1 7.8303 5.3293 -3.1825 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.2090 2.3115 0.0067 27 1 1.3305 4.5067 0.0060 28 1 4.2312 5.2876 -1.0173 29 1 3.3062 5.7573 0.4291 30 1 4.8857 4.9555 0.6043 31 1 3.7322 -0.7198 0.6775 32 1 4.1862 -0.4375 -1.0173 33 1 6.2316 -0.6988 0.2452 34 1 5.6873 0.4746 1.4713 35 1 6.0285 1.1730 -1.4810 36 1 7.3051 1.4237 -0.2629 37 1 8.5434 4.8692 0.6064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084395982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:36 Heat of formation + Delta-G solvation = -32.649822 kcal Electronic energy + Delta-G solvation = -18385.937625 eV Core-core repulsion = 15706.549203 eV Total energy + Delta-G solvation = -2679.388422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96374 -37.82387 -35.15814 -33.54368 -31.19229 -29.65593 -28.72466 -27.28308 -25.68765 -24.29751 -21.92984 -21.85720 -19.92743 -18.46667 -17.14957 -16.42335 -15.79129 -15.40355 -14.64334 -14.35604 -13.76661 -13.60977 -13.03935 -12.93392 -12.71746 -12.45751 -12.07202 -11.65522 -11.60735 -11.23932 -11.10590 -10.96815 -10.88376 -10.60480 -10.45862 -10.32425 -10.14823 -9.90784 -9.54324 -8.99383 -8.98449 -8.40562 -7.70973 -7.18686 -6.04008 -4.00103 2.11486 2.20185 3.29961 3.35688 3.38451 3.70068 4.38824 4.52384 5.19585 5.25403 5.29771 5.34786 5.45099 5.56947 5.74839 5.87425 5.91177 6.06099 6.19563 6.20546 6.41778 6.53538 6.54940 6.65613 6.75525 6.83139 6.93472 7.02199 7.07813 7.13590 7.27208 7.28920 7.59320 7.68701 7.74999 7.87030 7.91680 8.03558 8.38170 8.97722 9.54383 11.04477 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.007916 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.657332 B = 3536.270181 C = 4223.524323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.102 3.898 4 C -0.227 4.227 5 C -0.104 4.104 6 C -0.095 4.095 7 C -0.091 4.091 8 C -0.004 4.004 9 C -0.118 4.118 10 C -0.060 4.060 11 C -0.123 4.123 12 C -0.100 4.100 13 C 0.067 3.933 14 H 0.073 0.927 15 C -0.496 4.496 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.884 3.116 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.022 0.978 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 -5.061 0.174 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.058 3.942 4 C -0.246 4.246 5 C -0.122 4.122 6 C -0.095 4.095 7 C -0.147 4.147 8 C -0.004 4.004 9 C -0.119 4.119 10 C -0.097 4.097 11 C -0.161 4.161 12 C -0.138 4.138 13 C 0.049 3.951 14 H 0.091 0.909 15 C -0.534 4.534 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.531 5.531 19 Si 0.712 3.288 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.924 -5.174 0.276 11.195 hybrid contribution -0.173 0.926 -0.701 1.175 sum -10.096 -4.247 -0.426 10.961 Atomic orbital electron populations 1.22893 0.79796 1.02833 1.00862 1.86010 1.20160 1.27848 1.89483 1.18967 0.91904 0.83450 0.99843 1.20833 0.98654 0.92665 1.12433 1.20681 0.94381 0.96200 1.00931 1.19979 0.92212 0.96561 1.00774 1.20935 0.99801 0.90807 1.03145 1.20294 0.98664 0.89644 0.91844 1.19046 0.89433 0.95857 1.07533 1.20138 0.95058 0.93669 1.00807 1.21667 0.94764 0.99104 1.00528 1.21624 1.00102 0.94381 0.97719 1.17960 0.84303 0.93330 0.99539 0.90936 1.20903 1.10847 1.14519 1.07118 0.92497 1.24871 0.96479 0.97332 0.95116 1.69897 1.17932 1.40091 1.25132 0.86773 0.78099 0.82480 0.81489 1.20014 1.21332 1.20281 0.93256 0.89098 0.93258 0.86849 0.87051 0.91122 0.95903 0.88958 0.92090 0.91995 0.93203 0.92467 0.93628 0.92157 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.34 9.53 -19.42 -0.19 -5.52 16 3 C 0.10 1.93 6.65 -39.08 -0.26 1.67 16 4 C -0.23 -3.98 9.02 -39.53 -0.36 -4.33 16 5 C -0.10 -1.93 9.65 -39.70 -0.38 -2.31 16 6 C -0.10 -2.02 5.73 -104.45 -0.60 -2.62 16 7 C -0.09 -1.93 8.06 36.01 0.29 -1.64 16 8 C 0.00 -0.09 5.42 -104.63 -0.57 -0.66 16 9 C -0.12 -2.43 5.75 -104.47 -0.60 -3.03 16 10 C -0.06 -1.11 5.27 -28.06 -0.15 -1.26 16 11 C -0.12 -2.34 5.98 -26.70 -0.16 -2.50 16 12 C -0.10 -2.23 5.24 -26.70 -0.14 -2.37 16 13 C 0.07 1.61 1.68 -93.09 -0.16 1.46 16 14 H 0.07 1.95 7.34 -51.93 -0.38 1.57 16 15 C -0.50 -12.69 4.44 -34.44 -0.15 -12.84 16 16 H 0.06 1.49 6.96 -52.49 -0.37 1.12 16 17 C 0.06 1.66 4.89 -17.82 -0.09 1.57 16 18 N -0.89 -24.46 12.83 55.43 0.71 -23.74 16 19 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.53 7.64 -51.93 -0.40 0.13 16 26 H 0.11 1.64 6.27 -52.49 -0.33 1.31 16 27 H 0.11 1.79 8.05 -52.49 -0.42 1.36 16 28 H 0.07 1.55 6.61 -51.93 -0.34 1.21 16 29 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 30 H 0.09 2.20 5.88 -51.93 -0.31 1.90 16 31 H 0.06 1.06 7.76 -51.93 -0.40 0.66 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.04 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.06 1.42 8.14 -51.92 -0.42 1.00 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 290.08 15.07 4.37 4.37 Total: -1.00 -27.47 290.08 -7.88 -35.35 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.43 Total: 1.61 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: -2.33 Total: -27.53 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.71 Total: -23.74 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.19 Total: -5.52 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.47 -7.88 -35.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084395982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.700 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds