Wall clock time and date at job start Mon Mar 30 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00088 * 2 1 4 4 C 1.38476 * 119.78312 * 0.22949 * 3 2 1 5 5 C 1.38135 * 119.71164 * 179.97438 * 4 3 2 6 6 C 1.38008 * 119.82818 * 359.79716 * 5 4 3 7 7 C 1.50702 * 119.66533 * 179.97438 * 6 5 4 8 8 C 1.38915 * 120.66261 * 0.02562 * 6 5 4 9 9 C 1.37610 * 119.72273 * 0.16560 * 8 6 5 10 10 C 1.50622 * 122.59493 * 179.57107 * 9 8 6 11 11 C 1.52723 * 110.60066 * 17.54533 * 10 9 8 12 12 C 1.53333 * 108.39259 * 309.01269 * 11 10 9 13 13 C 1.50643 * 117.72321 * 180.24843 * 8 6 5 14 14 H 1.09006 * 109.25704 * 77.39587 * 13 8 6 15 15 C 1.50700 * 109.25741 * 317.92533 * 13 8 6 16 16 H 1.08002 * 119.99695 * 327.43880 * 15 13 8 17 17 C 1.37870 * 120.00208 * 147.43548 * 15 13 8 18 18 N 1.31517 * 120.00118 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00125 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47101 * 60.00133 * 19 17 15 21 21 H 1.48503 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47313 * 300.00193 * 19 17 15 23 23 H 1.08997 * 109.47522 * 60.00076 * 1 2 3 24 24 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47171 * 299.99456 * 1 2 3 26 26 H 1.08000 * 120.14556 * 359.88354 * 4 3 2 27 27 H 1.07992 * 120.08830 * 179.81002 * 5 4 3 28 28 H 1.08994 * 109.46690 * 264.34712 * 7 6 5 29 29 H 1.09000 * 109.47242 * 24.35140 * 7 6 5 30 30 H 1.09002 * 109.46720 * 144.35092 * 7 6 5 31 31 H 1.09001 * 109.24964 * 137.83312 * 10 9 8 32 32 H 1.08994 * 109.24991 * 257.25259 * 10 9 8 33 33 H 1.09008 * 109.68132 * 189.28602 * 11 10 9 34 34 H 1.09000 * 109.70352 * 68.75617 * 11 10 9 35 35 H 1.08993 * 109.69174 * 310.16435 * 12 11 10 36 36 H 1.09008 * 109.71461 * 189.61988 * 12 11 10 37 37 H 0.97006 * 120.00294 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2874 2.3693 0.0048 5 6 1.9161 3.5993 0.0053 6 6 3.2946 3.6657 0.0053 7 6 3.9766 5.0095 0.0053 8 6 4.0596 2.5062 0.0042 9 6 3.4379 1.2786 -0.0003 10 6 4.2034 -0.0186 -0.0112 11 6 5.6523 0.2089 0.4148 12 6 6.2294 1.3544 -0.4253 13 6 5.5586 2.6557 0.0100 14 1 5.8905 2.9115 1.0163 15 6 5.9518 3.7589 -0.9383 16 1 5.3684 3.9386 -1.8292 17 6 7.0561 4.5390 -0.6685 18 7 7.7662 4.3206 0.4168 19 14 7.5439 5.9061 -1.8444 20 1 6.4320 6.8843 -1.9547 21 1 8.7574 6.5910 -1.3310 22 1 7.8303 5.3293 -3.1825 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.2090 2.3115 0.0067 27 1 1.3305 4.5067 0.0060 28 1 4.2312 5.2876 -1.0173 29 1 3.3062 5.7573 0.4291 30 1 4.8857 4.9555 0.6043 31 1 3.7322 -0.7198 0.6775 32 1 4.1862 -0.4375 -1.0173 33 1 6.2316 -0.6988 0.2452 34 1 5.6873 0.4746 1.4713 35 1 6.0285 1.1730 -1.4810 36 1 7.3051 1.4237 -0.2629 37 1 8.5434 4.8692 0.6064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084395982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:36 Heat of formation + Delta-G solvation = -46.363485 kcal Electronic energy + Delta-G solvation = -18386.532294 eV Core-core repulsion = 15706.549203 eV Total energy + Delta-G solvation = -2679.983091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.41661 -39.23163 -36.72588 -35.32714 -32.94446 -31.16383 -30.40146 -28.47886 -27.31826 -25.94573 -23.65827 -23.42808 -21.42374 -20.06177 -18.70648 -18.21987 -17.21707 -16.56894 -16.47733 -15.89084 -15.18492 -15.12648 -14.62971 -14.47914 -14.38635 -14.15175 -13.54406 -13.18406 -13.13756 -12.89594 -12.67355 -12.57578 -12.42709 -12.26860 -12.18261 -11.87932 -11.81304 -11.54385 -11.21231 -10.82411 -10.74802 -10.37966 -9.30035 -8.67570 -8.05499 -6.06091 0.60888 0.69161 1.43110 1.44402 1.50822 2.45383 2.53603 2.97352 3.24235 3.92287 4.00325 4.22668 4.30526 4.36409 4.47074 4.49393 4.55413 4.62204 4.68544 4.77587 4.88553 4.95415 4.99419 5.03362 5.17053 5.20393 5.24345 5.39669 5.42548 5.54311 5.57948 5.66808 5.70548 5.89067 5.91431 6.12939 6.23603 6.42555 6.65828 6.95540 7.50144 9.02622 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.007916 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.657332 B = 3536.270181 C = 4223.524323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.105 3.895 4 C -0.218 4.218 5 C -0.098 4.098 6 C -0.123 4.123 7 C -0.080 4.080 8 C -0.034 4.034 9 C -0.138 4.138 10 C -0.054 4.054 11 C -0.114 4.114 12 C -0.096 4.096 13 C 0.070 3.930 14 H 0.033 0.967 15 C -0.491 4.491 16 H 0.048 0.952 17 C 0.021 3.979 18 N -0.925 5.925 19 Si 0.935 3.065 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.060 0.940 24 H 0.119 0.881 25 H 0.061 0.939 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 -5.828 -0.376 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.060 3.940 4 C -0.236 4.236 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.136 4.136 8 C -0.034 4.034 9 C -0.138 4.138 10 C -0.091 4.091 11 C -0.152 4.152 12 C -0.134 4.134 13 C 0.052 3.948 14 H 0.051 0.949 15 C -0.529 4.529 16 H 0.066 0.934 17 C -0.177 4.177 18 N -0.565 5.565 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.079 0.921 24 H 0.137 0.863 25 H 0.080 0.920 26 H 0.170 0.830 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.770 -5.948 -0.282 14.090 hybrid contribution 0.545 1.085 -0.516 1.319 sum -12.225 -4.863 -0.798 13.181 Atomic orbital electron populations 1.23288 0.76957 1.05262 1.01948 1.85998 1.22999 1.26619 1.89012 1.19002 0.91443 0.84861 0.98650 1.21237 1.00538 0.91611 1.10251 1.20970 0.93223 0.98050 0.99357 1.20084 0.93738 0.95822 1.02714 1.20706 0.99001 0.92221 1.01711 1.20146 0.97429 0.91291 0.94548 1.19241 0.91026 0.95700 1.07880 1.20119 0.94143 0.93311 1.01518 1.21573 0.95737 0.98638 0.99213 1.21477 0.98590 0.95314 0.97994 1.17767 0.86445 0.93629 0.97008 0.94898 1.21024 1.10316 1.14814 1.06752 0.93389 1.25455 0.96597 0.99292 0.96311 1.70020 1.18476 1.41233 1.26784 0.85948 0.77892 0.80375 0.79648 1.19042 1.21323 1.20128 0.92123 0.86265 0.92028 0.83047 0.84160 0.92514 0.93213 0.92526 0.90453 0.91340 0.90589 0.93309 0.94075 0.94568 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.84 9.53 -92.39 -0.88 -10.72 16 3 C 0.11 3.67 6.65 22.60 0.15 3.82 16 4 C -0.22 -6.82 9.02 22.30 0.20 -6.62 16 5 C -0.10 -3.38 9.65 22.19 0.21 -3.17 16 6 C -0.12 -5.22 5.73 -19.76 -0.11 -5.33 16 7 C -0.08 -3.45 8.06 71.24 0.57 -2.88 16 8 C -0.03 -1.54 5.42 -19.87 -0.11 -1.65 16 9 C -0.14 -5.55 5.75 -19.77 -0.11 -5.67 16 10 C -0.05 -1.94 5.27 29.73 0.16 -1.79 16 11 C -0.11 -4.34 5.98 30.61 0.18 -4.16 16 12 C -0.10 -4.42 5.24 30.62 0.16 -4.26 16 13 C 0.07 3.53 1.68 -12.39 -0.02 3.51 16 14 H 0.03 1.90 7.34 -2.38 -0.02 1.89 16 15 C -0.49 -26.16 4.44 25.60 0.11 -26.04 16 16 H 0.05 2.59 6.96 -2.91 -0.02 2.57 16 17 C 0.02 1.16 4.89 84.65 0.41 1.58 16 18 N -0.92 -53.13 12.83 21.44 0.28 -52.86 16 19 Si 0.94 42.98 29.54 68.60 2.03 45.00 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 24 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.02 7.64 -2.39 -0.02 1.01 16 26 H 0.15 3.54 6.27 -2.91 -0.02 3.52 16 27 H 0.14 3.95 8.05 -2.91 -0.02 3.93 16 28 H 0.06 2.53 6.61 -2.39 -0.02 2.52 16 29 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16 30 H 0.06 2.82 5.88 -2.39 -0.01 2.81 16 31 H 0.08 2.52 7.76 -2.39 -0.02 2.50 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 35 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 36 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -61.37 290.08 5.40 -55.98 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.05 Total: 13.76 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 2.92 Total: -51.17 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.28 Total: -52.86 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.88 Total: -10.72 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -61.37 5.40 -55.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084395982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.613 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds