Wall clock time and date at job start Mon Mar 30 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35902 * 117.00149 * 2 1 4 4 C 1.38755 * 120.05330 * 0.21172 * 3 2 1 5 5 C 1.38132 * 119.94326 * 180.23213 * 4 3 2 6 6 C 1.38290 * 120.05170 * 359.81338 * 5 4 3 7 7 C 1.50699 * 119.93723 * 179.97438 * 6 5 4 8 8 C 1.38241 * 120.11373 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.05857 * 359.97438 * 8 6 5 10 10 C 1.50696 * 120.03041 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47107 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.46982 * 300.00234 * 10 9 8 13 13 H 1.07999 * 120.00538 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99661 * 179.97438 * 12 10 9 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.53001 * 109.47079 * 60.00290 * 10 9 8 21 21 C 1.52995 * 117.50115 * 128.74608 * 20 10 9 22 22 C 1.52999 * 117.50048 * 60.08501 * 20 10 9 23 23 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46729 * 299.99836 * 1 2 3 25 25 H 1.08998 * 109.47603 * 59.99619 * 1 2 3 26 26 H 1.08003 * 120.03183 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.97348 * 179.78953 * 5 4 3 28 28 H 1.08996 * 109.47345 * 269.97486 * 7 6 5 29 29 H 1.09004 * 109.47628 * 29.98201 * 7 6 5 30 30 H 1.09008 * 109.46394 * 149.97678 * 7 6 5 31 31 H 1.07998 * 119.97152 * 180.02562 * 8 6 5 32 32 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 33 33 H 1.09005 * 115.55007 * 274.41790 * 20 10 9 34 34 H 1.08995 * 117.49864 * 0.02562 * 21 20 10 35 35 H 1.09005 * 117.49809 * 145.02083 * 21 20 10 36 36 H 1.09001 * 117.49877 * 214.98517 * 22 20 10 37 37 H 1.09002 * 117.49868 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0004 6 6 3.3019 3.6758 -0.0058 7 6 3.9860 5.0186 -0.0117 8 6 4.0559 2.5171 -0.0058 9 6 3.4311 1.2848 0.0001 10 6 4.2537 0.0222 -0.0005 11 1 3.5910 -0.8432 0.0052 12 6 5.1175 -0.0140 -1.2347 13 1 5.0749 0.7961 -1.9477 14 6 5.9624 -1.0813 -1.4538 15 7 6.0148 -2.0676 -0.5853 16 14 7.0327 -1.1266 -2.9840 17 1 8.3354 -0.4741 -2.6965 18 1 6.3500 -0.4039 -4.0872 19 1 7.2637 -2.5376 -3.3851 20 6 5.1420 -0.0084 1.2449 21 6 5.1040 -1.2703 2.1090 22 6 4.4484 0.0197 2.6083 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.2127 2.3204 0.0083 27 1 1.3340 4.5115 -0.0004 28 1 4.1474 5.3396 -1.0407 29 1 3.3597 5.7477 0.5025 30 1 4.9457 4.9395 0.4992 31 1 5.1343 2.5752 -0.0096 32 1 5.4593 -2.0439 0.2095 33 1 6.0960 0.5114 1.1548 34 1 4.4464 -2.0790 1.7902 35 1 6.0328 -1.5807 2.5878 36 1 4.9461 0.5575 3.4153 37 1 3.3591 0.0594 2.6181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084395998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:18 Heat of formation + Delta-G solvation = -1.942615 kcal Electronic energy + Delta-G solvation = -18205.897616 eV Core-core repulsion = 15527.840758 eV Total energy + Delta-G solvation = -2678.056858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76983 -37.35686 -36.64867 -32.80337 -31.70455 -30.87271 -27.52336 -26.86836 -25.42679 -23.28401 -21.81473 -21.46753 -20.32851 -19.03437 -17.45785 -16.71547 -15.77789 -15.28096 -14.75883 -14.09079 -13.78003 -13.69829 -13.47698 -13.33374 -13.13168 -12.76504 -12.10984 -11.84162 -11.61583 -11.50567 -11.19989 -10.77529 -10.74480 -10.68228 -10.41100 -10.19581 -10.06516 -9.85070 -9.45058 -9.00644 -8.48057 -8.22139 -8.02951 -7.31445 -6.17122 -3.95479 1.99035 2.05325 3.48116 3.52026 3.67677 3.83139 4.36904 4.62188 4.85284 5.19772 5.32561 5.38137 5.40303 5.47162 5.48762 5.65455 5.70030 5.82661 5.89542 5.91526 5.98915 6.08577 6.18688 6.33749 6.38475 6.40127 6.65084 6.73380 6.83770 6.93588 6.97943 7.02090 7.25760 7.29193 7.50957 7.76947 8.04228 8.30242 8.56982 9.03388 9.77974 11.19583 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.008768 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.994195 B = 3192.781709 C = 3540.125239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.107 3.893 4 C -0.210 4.210 5 C -0.109 4.109 6 C -0.131 4.131 7 C -0.103 4.103 8 C -0.071 4.071 9 C -0.045 4.045 10 C 0.097 3.903 11 H 0.037 0.963 12 C -0.592 4.592 13 H 0.050 0.950 14 C 0.025 3.975 15 N -0.915 5.915 16 Si 1.065 2.935 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.286 1.286 20 C -0.103 4.103 21 C -0.168 4.168 22 C -0.207 4.207 23 H 0.093 0.907 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.285 0.715 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 8.449 3.042 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.062 3.938 4 C -0.229 4.229 5 C -0.127 4.127 6 C -0.131 4.131 7 C -0.160 4.160 8 C -0.089 4.089 9 C -0.046 4.046 10 C 0.078 3.922 11 H 0.055 0.945 12 C -0.630 4.630 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.553 5.553 16 Si 0.894 3.106 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.212 1.212 20 C -0.122 4.122 21 C -0.205 4.205 22 C -0.245 4.245 23 H 0.111 0.889 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.549 7.334 2.246 10.086 hybrid contribution -1.464 1.047 0.794 1.967 sum -8.014 8.381 3.040 11.988 Atomic orbital electron populations 1.22931 0.80046 1.03145 1.00486 1.86183 1.19817 1.27079 1.88958 1.18958 0.92288 0.83672 0.98849 1.21020 0.99009 0.92585 1.10282 1.20515 0.93829 0.96284 1.02104 1.19767 0.93564 0.95312 1.04468 1.20648 1.00014 0.93752 1.01569 1.20761 0.99911 0.90279 0.97980 1.19708 0.89758 0.97343 0.97744 1.17526 0.92044 0.89956 0.92632 0.94548 1.21890 1.25886 1.08875 1.06328 0.93184 1.25659 0.97407 0.92492 1.02552 1.70695 1.40057 1.32239 1.12304 0.83607 0.75813 0.75949 0.75190 1.21614 1.21641 1.21150 1.22667 0.99977 0.99202 0.90374 1.22758 1.01467 0.91698 1.04624 1.22990 0.99138 1.02817 0.99517 0.88894 0.93445 0.93303 0.86566 0.87040 0.91966 0.92486 0.91954 0.85551 0.90021 0.89231 0.89496 0.90152 0.90612 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.31 -6.18 9.26 -19.43 -0.18 -6.36 16 3 C 0.11 2.20 6.66 -39.21 -0.26 1.94 16 4 C -0.21 -3.63 9.04 -39.43 -0.36 -3.99 16 5 C -0.11 -1.78 9.69 -39.60 -0.38 -2.16 16 6 C -0.13 -2.26 5.88 -104.60 -0.62 -2.88 16 7 C -0.10 -1.39 10.01 36.01 0.36 -1.03 16 8 C -0.07 -1.45 8.47 -39.61 -0.34 -1.79 16 9 C -0.04 -1.01 4.40 -104.47 -0.46 -1.47 16 10 C 0.10 2.46 1.82 -92.93 -0.17 2.29 16 11 H 0.04 1.02 6.62 -51.93 -0.34 0.68 16 12 C -0.59 -16.59 8.22 -34.44 -0.28 -16.87 16 13 H 0.05 1.42 7.60 -52.49 -0.40 1.02 16 14 C 0.02 0.70 5.30 -17.82 -0.09 0.61 16 15 N -0.92 -27.22 13.38 55.43 0.74 -26.48 16 16 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.10 -2.43 3.86 -90.62 -0.35 -2.78 16 21 C -0.17 -3.71 8.14 -26.70 -0.22 -3.93 16 22 C -0.21 -4.21 9.87 -26.69 -0.26 -4.47 16 23 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 25 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 26 H 0.12 1.66 6.30 -52.48 -0.33 1.33 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.06 0.81 8.08 -51.92 -0.42 0.39 16 31 H 0.13 2.60 8.05 -52.49 -0.42 2.18 16 32 H 0.29 8.18 3.55 -40.82 -0.14 8.04 16 33 H 0.09 2.20 8.11 -51.93 -0.42 1.78 16 34 H 0.09 2.00 7.42 -51.93 -0.39 1.61 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -31.01 302.96 -7.81 -38.82 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.41 Total: 4.23 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: -2.44 Total: -35.13 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.18 Total: -6.36 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.01 -7.81 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084395998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.875 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds