Wall clock time and date at job start Mon Mar 30 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35902 * 117.00149 * 2 1 4 4 C 1.38755 * 120.05330 * 0.21172 * 3 2 1 5 5 C 1.38132 * 119.94326 * 180.23213 * 4 3 2 6 6 C 1.38290 * 120.05170 * 359.81338 * 5 4 3 7 7 C 1.50699 * 119.93723 * 179.97438 * 6 5 4 8 8 C 1.38241 * 120.11373 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.05857 * 359.97438 * 8 6 5 10 10 C 1.50696 * 120.03041 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47107 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.46982 * 300.00234 * 10 9 8 13 13 H 1.07999 * 120.00538 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99661 * 179.97438 * 12 10 9 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.53001 * 109.47079 * 60.00290 * 10 9 8 21 21 C 1.52995 * 117.50115 * 128.74608 * 20 10 9 22 22 C 1.52999 * 117.50048 * 60.08501 * 20 10 9 23 23 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46729 * 299.99836 * 1 2 3 25 25 H 1.08998 * 109.47603 * 59.99619 * 1 2 3 26 26 H 1.08003 * 120.03183 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.97348 * 179.78953 * 5 4 3 28 28 H 1.08996 * 109.47345 * 269.97486 * 7 6 5 29 29 H 1.09004 * 109.47628 * 29.98201 * 7 6 5 30 30 H 1.09008 * 109.46394 * 149.97678 * 7 6 5 31 31 H 1.07998 * 119.97152 * 180.02562 * 8 6 5 32 32 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 33 33 H 1.09005 * 115.55007 * 274.41790 * 20 10 9 34 34 H 1.08995 * 117.49864 * 0.02562 * 21 20 10 35 35 H 1.09005 * 117.49809 * 145.02083 * 21 20 10 36 36 H 1.09001 * 117.49877 * 214.98517 * 22 20 10 37 37 H 1.09002 * 117.49868 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0004 6 6 3.3019 3.6758 -0.0058 7 6 3.9860 5.0186 -0.0117 8 6 4.0559 2.5171 -0.0058 9 6 3.4311 1.2848 0.0001 10 6 4.2537 0.0222 -0.0005 11 1 3.5910 -0.8432 0.0052 12 6 5.1175 -0.0140 -1.2347 13 1 5.0749 0.7961 -1.9477 14 6 5.9624 -1.0813 -1.4538 15 7 6.0148 -2.0676 -0.5853 16 14 7.0327 -1.1266 -2.9840 17 1 8.3354 -0.4741 -2.6965 18 1 6.3500 -0.4039 -4.0872 19 1 7.2637 -2.5376 -3.3851 20 6 5.1420 -0.0084 1.2449 21 6 5.1040 -1.2703 2.1090 22 6 4.4484 0.0197 2.6083 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.2127 2.3204 0.0083 27 1 1.3340 4.5115 -0.0004 28 1 4.1474 5.3396 -1.0407 29 1 3.3597 5.7477 0.5025 30 1 4.9457 4.9395 0.4992 31 1 5.1343 2.5752 -0.0096 32 1 5.4593 -2.0439 0.2095 33 1 6.0960 0.5114 1.1548 34 1 4.4464 -2.0790 1.7902 35 1 6.0328 -1.5807 2.5878 36 1 4.9461 0.5575 3.4153 37 1 3.3591 0.0594 2.6181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084395998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:17 Heat of formation + Delta-G solvation = -18.430237 kcal Electronic energy + Delta-G solvation = -18206.612573 eV Core-core repulsion = 15527.840758 eV Total energy + Delta-G solvation = -2678.771815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22171 -38.95976 -38.20696 -34.76771 -33.27680 -32.30254 -28.86416 -28.51450 -26.67268 -25.30937 -23.44252 -23.13753 -21.78852 -20.83087 -18.90201 -18.68701 -17.21792 -16.66954 -16.36662 -15.75155 -15.50597 -15.12893 -15.09175 -14.75890 -14.42076 -14.38194 -13.86212 -13.07397 -12.97846 -12.92909 -12.67610 -12.57138 -12.41631 -12.27396 -12.00077 -11.93200 -11.64479 -11.51495 -11.34202 -10.81873 -10.49542 -10.26504 -9.55928 -8.77459 -8.39825 -6.20638 0.55712 0.62695 1.52325 1.61151 1.78582 2.55464 2.61036 2.94327 3.07359 3.29649 3.95852 3.96787 4.09185 4.15586 4.23427 4.25685 4.34687 4.37937 4.52990 4.58420 4.66179 4.71093 4.77657 4.87831 4.91404 4.95613 5.04164 5.19572 5.24065 5.25960 5.32011 5.49404 5.52938 5.78734 5.90650 6.06281 6.22358 6.36704 6.66008 6.83853 7.60723 8.96950 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.008768 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.994195 B = 3192.781709 C = 3540.125239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.087 3.913 4 C -0.203 4.203 5 C -0.100 4.100 6 C -0.130 4.130 7 C -0.101 4.101 8 C -0.088 4.088 9 C -0.084 4.084 10 C 0.103 3.897 11 H -0.003 1.003 12 C -0.602 4.602 13 H 0.037 0.963 14 C -0.024 4.024 15 N -0.943 5.943 16 Si 1.108 2.892 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.285 1.285 20 C -0.121 4.121 21 C -0.172 4.172 22 C -0.170 4.170 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.150 0.850 27 H 0.155 0.845 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.282 0.718 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 10.891 3.313 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C 0.042 3.958 4 C -0.221 4.221 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.158 4.158 8 C -0.107 4.107 9 C -0.085 4.085 10 C 0.085 3.915 11 H 0.015 0.985 12 C -0.640 4.640 13 H 0.055 0.945 14 C -0.224 4.224 15 N -0.582 5.582 16 Si 0.932 3.068 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.211 1.211 20 C -0.140 4.140 21 C -0.209 4.209 22 C -0.207 4.207 23 H 0.126 0.874 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.168 0.832 27 H 0.172 0.828 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.920 9.792 2.531 12.846 hybrid contribution -1.163 0.332 0.721 1.408 sum -9.083 10.124 3.252 13.985 Atomic orbital electron populations 1.23264 0.77168 1.04875 1.02105 1.86129 1.22975 1.27653 1.89168 1.19135 0.91971 0.84996 0.99687 1.21397 1.00566 0.91664 1.08514 1.21036 0.93636 0.97499 0.99595 1.20162 0.94313 0.95757 1.02820 1.20710 1.00297 0.92106 1.02638 1.20726 0.99430 0.91053 0.99457 1.19601 0.90936 0.96637 1.01290 1.17234 0.91502 0.90388 0.92389 0.98505 1.22194 1.26240 1.08309 1.07280 0.94488 1.26969 0.98590 0.92172 1.04658 1.70767 1.41156 1.33193 1.13088 0.83043 0.75142 0.76150 0.72471 1.19903 1.20447 1.21054 1.22379 0.99566 1.00543 0.91549 1.22705 1.01901 0.91534 1.04783 1.22963 0.99056 1.00730 0.97940 0.87377 0.91337 0.91900 0.83235 0.82759 0.90981 0.89591 0.91937 0.87264 0.90440 0.90910 0.91221 0.89208 0.87677 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.34 -14.07 9.26 -92.45 -0.86 -14.93 16 3 C 0.09 3.55 6.66 22.51 0.15 3.70 16 4 C -0.20 -6.44 9.04 22.37 0.20 -6.24 16 5 C -0.10 -2.87 9.69 22.26 0.22 -2.66 16 6 C -0.13 -4.21 5.88 -19.85 -0.12 -4.33 16 7 C -0.10 -2.40 10.01 71.24 0.71 -1.69 16 8 C -0.09 -3.65 8.47 22.25 0.19 -3.46 16 9 C -0.08 -3.89 4.40 -19.77 -0.09 -3.97 16 10 C 0.10 5.53 1.82 -12.29 -0.02 5.51 16 11 H 0.00 -0.19 6.62 -2.39 -0.02 -0.20 16 12 C -0.60 -35.36 8.22 25.60 0.21 -35.15 16 13 H 0.04 2.19 7.60 -2.91 -0.02 2.17 16 14 C -0.02 -1.39 5.30 84.65 0.45 -0.94 16 15 N -0.94 -58.22 13.38 21.45 0.29 -57.93 16 16 Si 1.11 52.33 29.90 68.60 2.05 54.39 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 20 C -0.12 -5.95 3.86 -10.80 -0.04 -5.99 16 21 C -0.17 -7.83 8.14 30.62 0.25 -7.58 16 22 C -0.17 -6.89 9.87 30.62 0.30 -6.58 16 23 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.07 1.50 7.65 -2.39 -0.02 1.48 16 25 H 0.06 1.46 7.67 -2.39 -0.02 1.44 16 26 H 0.15 3.64 6.30 -2.91 -0.02 3.62 16 27 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.56 8.08 -2.38 -0.02 1.54 16 30 H 0.06 1.48 8.08 -2.38 -0.02 1.46 16 31 H 0.11 4.70 8.05 -2.91 -0.02 4.68 16 32 H 0.28 16.99 3.55 -92.71 -0.33 16.66 16 33 H 0.07 3.75 8.11 -2.38 -0.02 3.73 16 34 H 0.07 3.38 7.42 -2.39 -0.02 3.37 16 35 H 0.09 3.85 8.14 -2.38 -0.02 3.83 16 36 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 37 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -70.75 302.96 6.49 -64.26 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.48 Total: 21.94 kcal Atomic # 6 Polarization: -71.25 SS G_CDS: 3.52 Total: -67.73 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.29 Total: -57.93 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.86 Total: -14.93 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.05 Total: 54.39 kcal Total: -70.75 6.49 -64.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084395998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.832 kcal (2) G-P(sol) polarization free energy of solvation -70.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds