Wall clock time and date at job start Mon Mar 30 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00036 * 2 1 4 4 C 1.38752 * 120.05691 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94054 * 179.72713 * 4 3 2 6 6 C 1.38290 * 120.05953 * 0.52094 * 5 4 3 7 7 C 1.50693 * 119.94703 * 179.72463 * 6 5 4 8 8 H 1.09001 * 109.47231 * 179.73212 * 7 6 5 9 9 C 1.50700 * 109.47311 * 299.73198 * 7 6 5 10 10 H 1.08004 * 119.99957 * 94.71641 * 9 7 6 11 11 C 1.37878 * 120.00126 * 274.71562 * 9 7 6 12 12 N 1.31513 * 119.99864 * 5.02260 * 11 9 7 13 13 Si 1.86800 * 120.00248 * 185.01825 * 11 9 7 14 14 H 1.48504 * 109.46800 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47014 * 120.00240 * 13 11 9 16 16 H 1.48502 * 109.46939 * 240.00374 * 13 11 9 17 17 C 1.53002 * 109.47047 * 59.73032 * 7 6 5 18 18 C 1.53000 * 117.51745 * 105.92220 * 17 7 6 19 19 C 1.52996 * 117.49974 * 174.55268 * 17 7 6 20 20 C 1.38242 * 120.11006 * 359.45884 * 6 5 4 21 21 C 1.38170 * 120.05530 * 0.28650 * 20 6 5 22 22 C 1.50698 * 120.03046 * 180.02562 * 21 20 6 23 23 H 1.08997 * 109.46947 * 300.00216 * 1 2 3 24 24 H 1.09004 * 109.46927 * 60.00160 * 1 2 3 25 25 H 1.09000 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.02417 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.97464 * 180.27655 * 5 4 3 28 28 H 0.97003 * 120.00220 * 179.97438 * 12 11 9 29 29 H 1.08995 * 115.54983 * 320.22344 * 17 7 6 30 30 H 1.08999 * 117.50447 * 214.97133 * 18 17 7 31 31 H 1.09002 * 117.49767 * 359.97438 * 18 17 7 32 32 H 1.09001 * 117.50116 * 359.97438 * 19 17 7 33 33 H 1.09005 * 117.49987 * 144.97609 * 19 17 7 34 34 H 1.07995 * 119.97724 * 180.27282 * 20 6 5 35 35 H 1.08999 * 109.47029 * 90.00220 * 22 21 20 36 36 H 1.09001 * 109.47582 * 210.00402 * 22 21 20 37 37 H 1.09002 * 109.47185 * 330.00391 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0062 6 6 3.3021 3.6757 0.0005 7 6 3.9863 5.0184 0.0005 8 1 5.0669 4.8755 0.0004 9 6 3.5813 5.7886 -1.2299 10 1 2.7613 6.4898 -1.1825 11 6 4.2576 5.5980 -2.4162 12 7 5.1899 4.6742 -2.5005 13 14 3.8497 6.6517 -3.9037 14 1 2.7724 7.6108 -3.5504 15 1 5.0600 7.4010 -4.3264 16 1 3.3926 5.7811 -5.0166 17 6 3.5752 5.8002 1.2498 18 6 4.6068 5.9329 2.3719 19 6 4.2638 7.1432 1.5010 20 6 4.0561 2.5171 0.0004 21 6 3.4312 1.2847 0.0000 22 6 4.2537 0.0220 0.0004 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2129 2.3203 0.0014 27 1 1.3342 4.5114 0.0112 28 1 5.6655 4.5398 -3.3352 29 1 2.5277 5.7102 1.5372 30 1 4.2381 5.9302 3.3976 31 1 5.5785 5.4628 2.2204 32 1 5.0099 7.4696 0.7765 33 1 3.6691 7.9369 1.9534 34 1 5.1345 2.5750 0.0004 35 1 4.4514 -0.2824 1.0282 36 1 3.7067 -0.7682 -0.5138 37 1 5.1981 0.2034 -0.5128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084396001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:56 Heat of formation + Delta-G solvation = -4.355544 kcal Electronic energy + Delta-G solvation = -17818.154589 eV Core-core repulsion = 15139.993099 eV Total energy + Delta-G solvation = -2678.161490 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53053 -37.51517 -36.02340 -32.98027 -31.98692 -30.15721 -27.60202 -26.90088 -25.54757 -23.47080 -21.54475 -21.17564 -20.58648 -18.77234 -17.30089 -16.37373 -15.49840 -15.30141 -15.02906 -14.59337 -13.84262 -13.44079 -13.22377 -13.04306 -12.90173 -12.39281 -12.09800 -11.56147 -11.50251 -11.47816 -11.23043 -10.99827 -10.75785 -10.68627 -10.44845 -10.34982 -10.08030 -9.84497 -9.30261 -9.21714 -8.66155 -8.45937 -7.89186 -7.03917 -6.02741 -4.06275 2.25327 2.43196 3.28903 3.37449 3.40642 3.81524 4.40027 4.71955 4.78867 5.29744 5.30607 5.39643 5.48905 5.58461 5.65099 5.71596 5.86938 5.89881 5.99503 6.10633 6.17345 6.31033 6.35672 6.41800 6.48616 6.57407 6.68482 6.78561 6.90874 6.96095 7.15207 7.20771 7.44317 7.61120 7.69883 7.83916 8.01132 8.15331 8.37807 8.98358 9.56837 11.04573 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.007965 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.541809 B = 3514.317651 C = 4129.041954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.085 3.915 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.038 4.038 7 C 0.100 3.900 8 H 0.056 0.944 9 C -0.501 4.501 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.882 5.882 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.118 4.118 18 C -0.200 4.200 19 C -0.173 4.173 20 C -0.075 4.075 21 C -0.124 4.124 22 C -0.096 4.096 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -5.149 6.053 9.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.042 3.958 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.039 4.039 7 C 0.082 3.918 8 H 0.074 0.926 9 C -0.539 4.539 10 H 0.076 0.924 11 C -0.137 4.137 12 N -0.519 5.519 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.137 4.137 18 C -0.237 4.237 19 C -0.210 4.210 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.153 4.153 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.107 0.893 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.849 -5.414 5.919 9.373 hybrid contribution -0.570 0.718 -1.072 1.410 sum -5.418 -4.697 4.847 8.655 Atomic orbital electron populations 1.22865 0.79892 1.02626 1.00911 1.85965 1.20090 1.27879 1.89972 1.18599 0.91682 0.83446 1.02102 1.21016 0.98653 0.92805 1.10360 1.20699 0.94943 0.95759 0.98914 1.20474 0.92908 0.96759 0.93720 1.17562 0.96673 0.87218 0.90373 0.92620 1.20958 1.16925 1.22482 0.93497 0.92398 1.24971 0.95079 0.95014 0.98667 1.69952 1.24140 1.31462 1.26388 0.86597 0.78281 0.80517 0.83010 1.19720 1.21007 1.21172 1.22486 0.95666 0.98707 0.96792 1.22968 1.01165 1.04224 0.95357 1.22719 1.04370 0.91326 1.02608 1.20776 0.99575 0.90379 0.98626 1.19139 0.90275 0.95904 1.07119 1.20500 0.98785 0.94943 1.01096 0.93327 0.93257 0.89275 0.87056 0.86736 0.93006 0.89781 0.90539 0.89532 0.88753 0.90578 0.86208 0.92467 0.92151 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.59 9.54 -19.43 -0.19 -5.77 16 3 C 0.09 1.67 6.66 -39.21 -0.26 1.40 16 4 C -0.21 -4.03 9.04 -39.44 -0.36 -4.38 16 5 C -0.08 -1.80 8.66 -39.61 -0.34 -2.14 16 6 C -0.04 -0.86 4.77 -104.60 -0.50 -1.36 16 7 C 0.10 2.38 1.98 -92.93 -0.18 2.20 16 8 H 0.06 1.46 7.22 -51.93 -0.38 1.08 16 9 C -0.50 -13.11 7.73 -34.44 -0.27 -13.38 16 10 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 11 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 12 N -0.88 -24.72 13.01 55.43 0.72 -24.00 16 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.12 -2.42 4.92 -90.62 -0.45 -2.86 16 18 C -0.20 -3.59 10.18 -26.73 -0.27 -3.86 16 19 C -0.17 -3.25 10.01 -26.73 -0.27 -3.52 16 20 C -0.08 -1.66 9.32 -39.60 -0.37 -2.03 16 21 C -0.12 -2.50 5.89 -104.47 -0.62 -3.11 16 22 C -0.10 -1.62 9.79 36.00 0.35 -1.27 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 24 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.11 1.81 6.30 -52.49 -0.33 1.48 16 27 H 0.11 2.33 7.78 -52.48 -0.41 1.93 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 29 H 0.08 1.66 7.40 -51.93 -0.38 1.27 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.57 8.08 -51.93 -0.42 1.15 16 32 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.12 2.64 7.94 -52.49 -0.42 2.23 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 37 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 310.13 15.07 4.67 4.67 Total: -1.00 -28.53 310.13 -8.05 -36.57 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.60 Total: 3.69 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -2.63 Total: -31.25 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.72 Total: -24.00 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.19 Total: -5.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.53 -8.05 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.217 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds