Wall clock time and date at job start Mon Mar 30 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00036 * 2 1 4 4 C 1.38752 * 120.05691 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94054 * 179.72713 * 4 3 2 6 6 C 1.38290 * 120.05953 * 0.52094 * 5 4 3 7 7 C 1.50693 * 119.94703 * 179.72463 * 6 5 4 8 8 H 1.09001 * 109.47231 * 179.73212 * 7 6 5 9 9 C 1.50700 * 109.47311 * 299.73198 * 7 6 5 10 10 H 1.08004 * 119.99957 * 94.71641 * 9 7 6 11 11 C 1.37878 * 120.00126 * 274.71562 * 9 7 6 12 12 N 1.31513 * 119.99864 * 5.02260 * 11 9 7 13 13 Si 1.86800 * 120.00248 * 185.01825 * 11 9 7 14 14 H 1.48504 * 109.46800 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47014 * 120.00240 * 13 11 9 16 16 H 1.48502 * 109.46939 * 240.00374 * 13 11 9 17 17 C 1.53002 * 109.47047 * 59.73032 * 7 6 5 18 18 C 1.53000 * 117.51745 * 105.92220 * 17 7 6 19 19 C 1.52996 * 117.49974 * 174.55268 * 17 7 6 20 20 C 1.38242 * 120.11006 * 359.45884 * 6 5 4 21 21 C 1.38170 * 120.05530 * 0.28650 * 20 6 5 22 22 C 1.50698 * 120.03046 * 180.02562 * 21 20 6 23 23 H 1.08997 * 109.46947 * 300.00216 * 1 2 3 24 24 H 1.09004 * 109.46927 * 60.00160 * 1 2 3 25 25 H 1.09000 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.02417 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.97464 * 180.27655 * 5 4 3 28 28 H 0.97003 * 120.00220 * 179.97438 * 12 11 9 29 29 H 1.08995 * 115.54983 * 320.22344 * 17 7 6 30 30 H 1.08999 * 117.50447 * 214.97133 * 18 17 7 31 31 H 1.09002 * 117.49767 * 359.97438 * 18 17 7 32 32 H 1.09001 * 117.50116 * 359.97438 * 19 17 7 33 33 H 1.09005 * 117.49987 * 144.97609 * 19 17 7 34 34 H 1.07995 * 119.97724 * 180.27282 * 20 6 5 35 35 H 1.08999 * 109.47029 * 90.00220 * 22 21 20 36 36 H 1.09001 * 109.47582 * 210.00402 * 22 21 20 37 37 H 1.09002 * 109.47185 * 330.00391 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0062 6 6 3.3021 3.6757 0.0005 7 6 3.9863 5.0184 0.0005 8 1 5.0669 4.8755 0.0004 9 6 3.5813 5.7886 -1.2299 10 1 2.7613 6.4898 -1.1825 11 6 4.2576 5.5980 -2.4162 12 7 5.1899 4.6742 -2.5005 13 14 3.8497 6.6517 -3.9037 14 1 2.7724 7.6108 -3.5504 15 1 5.0600 7.4010 -4.3264 16 1 3.3926 5.7811 -5.0166 17 6 3.5752 5.8002 1.2498 18 6 4.6068 5.9329 2.3719 19 6 4.2638 7.1432 1.5010 20 6 4.0561 2.5171 0.0004 21 6 3.4312 1.2847 0.0000 22 6 4.2537 0.0220 0.0004 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2129 2.3203 0.0014 27 1 1.3342 4.5114 0.0112 28 1 5.6655 4.5398 -3.3352 29 1 2.5277 5.7102 1.5372 30 1 4.2381 5.9302 3.3976 31 1 5.5785 5.4628 2.2204 32 1 5.0099 7.4696 0.7765 33 1 3.6691 7.9369 1.9534 34 1 5.1345 2.5750 0.0004 35 1 4.4514 -0.2824 1.0282 36 1 3.7067 -0.7682 -0.5138 37 1 5.1981 0.2034 -0.5128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084396001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:56 Heat of formation + Delta-G solvation = -18.040161 kcal Electronic energy + Delta-G solvation = -17818.747999 eV Core-core repulsion = 15139.993099 eV Total energy + Delta-G solvation = -2678.754900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00085 -39.04871 -37.52026 -34.84625 -33.58718 -31.83658 -29.09550 -28.26396 -27.08711 -25.31635 -23.03713 -22.69966 -22.13785 -20.45697 -18.72155 -18.31542 -16.97680 -16.66507 -16.52022 -16.42626 -15.33830 -14.97914 -14.89542 -14.44265 -14.25874 -14.09744 -13.72061 -13.21868 -13.00880 -12.84565 -12.82023 -12.65899 -12.42391 -12.22693 -12.08130 -11.95831 -11.64358 -11.47726 -11.04592 -10.88593 -10.49493 -10.34298 -9.48307 -8.63275 -8.05259 -6.15236 0.64749 0.83826 1.39060 1.42004 1.51806 2.43849 2.55861 3.08011 3.20819 3.30590 4.02605 4.06471 4.15215 4.32093 4.39418 4.41491 4.45828 4.54902 4.63954 4.73561 4.79177 4.85558 4.87740 4.91217 4.94455 5.05177 5.11827 5.22614 5.33137 5.46022 5.53792 5.62190 5.68051 5.81502 5.93344 6.11235 6.20979 6.45112 6.68543 6.95668 7.49724 8.99600 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.007965 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.541809 B = 3514.317651 C = 4129.041954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.332 6.332 3 C 0.087 3.913 4 C -0.205 4.205 5 C -0.097 4.097 6 C -0.061 4.061 7 C 0.105 3.895 8 H 0.018 0.982 9 C -0.503 4.503 10 H 0.054 0.946 11 C 0.015 3.985 12 N -0.913 5.913 13 Si 0.944 3.056 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.288 1.288 17 C -0.139 4.139 18 C -0.182 4.182 19 C -0.170 4.170 20 C -0.094 4.094 21 C -0.135 4.135 22 C -0.092 4.092 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.121 0.879 26 H 0.144 0.856 27 H 0.118 0.882 28 H 0.257 0.743 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 -5.677 6.803 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.043 3.957 4 C -0.223 4.223 5 C -0.115 4.115 6 C -0.062 4.062 7 C 0.086 3.914 8 H 0.036 0.964 9 C -0.541 4.541 10 H 0.072 0.928 11 C -0.184 4.184 12 N -0.552 5.552 13 Si 0.770 3.230 14 H -0.189 1.189 15 H -0.208 1.208 16 H -0.215 1.215 17 C -0.157 4.157 18 C -0.219 4.219 19 C -0.207 4.207 20 C -0.113 4.113 21 C -0.136 4.136 22 C -0.149 4.149 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.139 0.861 26 H 0.162 0.838 27 H 0.136 0.864 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.768 -5.939 6.679 11.211 hybrid contribution -0.047 0.791 -1.252 1.482 sum -6.816 -5.148 5.427 10.119 Atomic orbital electron populations 1.23249 0.77242 1.05165 1.01695 1.85963 1.22750 1.26434 1.89522 1.18695 0.91637 0.84522 1.00861 1.21307 1.00322 0.91855 1.08828 1.20779 0.94247 0.96917 0.99599 1.20425 0.93898 0.96291 0.95554 1.17366 0.94449 0.88367 0.91220 0.96390 1.21235 1.16262 1.22140 0.94489 0.92803 1.25662 0.95342 0.96171 1.01205 1.70083 1.25366 1.33040 1.26705 0.85718 0.78175 0.79117 0.79950 1.18876 1.20783 1.21473 1.22377 0.96745 0.99834 0.96769 1.23004 0.99930 1.02777 0.96141 1.22748 1.03826 0.91680 1.02422 1.20735 0.98936 0.91407 1.00203 1.19460 0.91464 0.96274 1.06392 1.20512 0.98329 0.93620 1.02391 0.92058 0.92828 0.86054 0.83843 0.86398 0.93364 0.88822 0.87494 0.90427 0.90833 0.87833 0.87817 0.90622 0.91321 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.33 -10.52 9.54 -92.46 -0.88 -11.40 16 3 C 0.09 3.26 6.66 22.51 0.15 3.41 16 4 C -0.20 -7.49 9.04 22.36 0.20 -7.29 16 5 C -0.10 -4.08 8.66 22.25 0.19 -3.89 16 6 C -0.06 -2.85 4.77 -19.85 -0.09 -2.94 16 7 C 0.10 5.13 1.98 -12.29 -0.02 5.11 16 8 H 0.02 0.99 7.22 -2.39 -0.02 0.98 16 9 C -0.50 -26.91 7.73 25.60 0.20 -26.71 16 10 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 11 C 0.02 0.85 5.45 84.66 0.46 1.31 16 12 N -0.91 -52.98 13.01 21.45 0.28 -52.70 16 13 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 14 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 17 C -0.14 -5.68 4.92 -10.79 -0.05 -5.73 16 18 C -0.18 -6.35 10.18 30.59 0.31 -6.04 16 19 C -0.17 -6.25 10.01 30.59 0.31 -5.94 16 20 C -0.09 -4.29 9.32 22.25 0.21 -4.09 16 21 C -0.14 -5.42 5.89 -19.77 -0.12 -5.53 16 22 C -0.09 -3.01 9.79 71.24 0.70 -2.31 16 23 H 0.06 1.18 7.66 -2.39 -0.02 1.17 16 24 H 0.05 1.12 7.66 -2.39 -0.02 1.11 16 25 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.14 4.20 6.30 -2.91 -0.02 4.19 16 27 H 0.12 4.75 7.78 -2.91 -0.02 4.72 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.09 3.62 7.40 -2.39 -0.02 3.60 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.08 2.84 8.08 -2.39 -0.02 2.82 16 32 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 34 H 0.10 4.89 7.94 -2.91 -0.02 4.87 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 2.11 7.53 -2.39 -0.02 2.10 16 37 H 0.06 1.94 8.09 -2.39 -0.02 1.92 16 Total: -1.00 -62.20 310.13 6.01 -56.19 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.04 Total: 21.04 kcal Atomic # 6 Polarization: -62.62 SS G_CDS: 3.55 Total: -59.07 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.28 Total: -52.70 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.88 Total: -11.40 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -62.20 6.01 -56.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.145 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds