Wall clock time and date at job start Mon Mar 30 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35683 * 117.00187 * 2 1 4 4 C 1.38446 * 120.18645 * 359.97234 * 3 2 1 5 5 C 1.38258 * 120.15702 * 179.75352 * 4 3 2 6 6 C 1.38717 * 120.52584 * 0.54923 * 5 4 3 7 7 C 1.50699 * 119.81870 * 179.72282 * 6 5 4 8 8 C 1.52997 * 109.47078 * 299.73057 * 7 6 5 9 9 C 1.53006 * 109.46866 * 59.72880 * 7 6 5 10 10 C 1.37610 * 120.36286 * 359.44845 * 6 5 4 11 11 C 1.40411 * 119.83414 * 0.27558 * 10 6 5 12 12 C 1.41843 * 120.25399 * 180.02562 * 11 10 6 13 13 C 1.38290 * 119.99657 * 359.97438 * 12 11 10 14 14 C 1.38779 * 119.99789 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99345 * 0.02562 * 14 13 12 16 16 C 1.40596 * 120.00221 * 179.97438 * 14 13 12 17 17 N 1.30578 * 119.99888 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99877 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46716 * 90.00491 * 18 16 14 20 20 H 1.48496 * 109.47157 * 209.99999 * 18 16 14 21 21 H 1.48492 * 109.47489 * 330.00544 * 18 16 14 22 22 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47176 * 300.00508 * 1 2 3 24 24 H 1.09005 * 109.46877 * 60.00256 * 1 2 3 25 25 H 1.08005 * 119.92260 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.74319 * 180.27406 * 5 4 3 27 27 H 1.08996 * 109.46924 * 179.72310 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 29 29 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 31 31 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 32 32 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 33 33 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 34 34 H 1.07999 * 120.07839 * 180.28981 * 10 6 5 35 35 H 1.07999 * 120.00028 * 179.97438 * 12 11 10 36 36 H 1.07995 * 120.00567 * 359.97438 * 13 12 11 37 37 H 0.96998 * 119.99986 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2948 2.3725 -0.0006 5 6 1.9232 3.6040 0.0046 6 6 3.3077 3.6886 -0.0011 7 6 3.9760 5.0394 -0.0017 8 6 3.5557 5.8157 -1.2513 9 6 3.5555 5.8169 1.2472 10 6 4.0744 2.5459 -0.0005 11 6 3.4522 1.2872 0.0000 12 6 4.2338 0.1036 0.0012 13 6 5.6142 0.1867 0.0013 14 6 6.3790 -0.9714 0.0029 15 1 5.8960 -1.9374 0.0037 16 6 7.7824 -0.8871 0.0025 17 7 8.3663 0.2809 0.0010 18 14 8.8118 -2.4459 0.0054 19 1 9.0843 -2.8617 -1.3939 20 1 10.0965 -2.1894 0.7047 21 1 8.0729 -3.5257 0.7077 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 0.2161 2.3181 -0.0006 26 1 1.3314 4.5075 0.0086 27 1 5.0581 4.9093 -0.0015 28 1 3.8552 5.2618 -2.1410 29 1 4.0387 6.7929 -1.2514 30 1 2.4734 5.9458 -1.2514 31 1 2.4734 5.9468 1.2471 32 1 3.8550 5.2637 2.1375 33 1 4.0392 6.7937 1.2471 34 1 5.1521 2.6171 -0.0002 35 1 3.7509 -0.8624 0.0020 36 1 6.0972 1.1526 0.0000 37 1 9.3345 0.3391 0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084481547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:00 Heat of formation + Delta-G solvation = -37.526994 kcal Electronic energy + Delta-G solvation = -17223.564829 eV Core-core repulsion = 14543.964916 eV Total energy + Delta-G solvation = -2679.599912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.18165 -37.19819 -35.00301 -34.04042 -32.06300 -29.18061 -28.55010 -26.78494 -26.59143 -24.96542 -22.30147 -21.77316 -19.75585 -18.11295 -17.33693 -16.82188 -15.61561 -15.19097 -14.93201 -14.49244 -13.83751 -13.48358 -13.35855 -13.01640 -12.87810 -12.49512 -12.07905 -11.99498 -11.69903 -11.56076 -11.32479 -11.23034 -11.14420 -10.86587 -10.63745 -10.29053 -10.14345 -10.12778 -9.89865 -9.58733 -9.33788 -8.84085 -7.51390 -7.25095 -6.85381 -4.34530 2.15875 2.48049 2.84957 2.88593 2.94394 3.66158 3.70293 4.19581 4.75272 5.29077 5.32691 5.40482 5.53861 5.60826 5.68027 5.70898 5.87248 5.92200 5.93143 6.02733 6.13768 6.22896 6.30846 6.42272 6.58691 6.62030 6.69334 6.72148 6.87030 6.96593 7.26422 7.30839 7.54232 7.70083 7.86380 7.96156 8.06234 8.35437 8.55158 8.77273 8.92237 9.73901 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.006244 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.256138 B = 4483.282502 C = 5830.472702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.037 3.963 4 C -0.178 4.178 5 C -0.180 4.180 6 C -0.076 4.076 7 C -0.053 4.053 8 C -0.139 4.139 9 C -0.139 4.139 10 C -0.173 4.173 11 C 0.056 3.944 12 C -0.394 4.394 13 C 0.075 3.925 14 C -0.409 4.409 15 H 0.083 0.917 16 C 0.066 3.934 17 N -0.777 5.777 18 Si 0.925 3.075 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.255 1.255 22 H 0.086 0.914 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 4.685 -0.008 7.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.007 4.007 4 C -0.197 4.197 5 C -0.199 4.199 6 C -0.076 4.076 7 C -0.072 4.072 8 C -0.196 4.196 9 C -0.196 4.196 10 C -0.192 4.192 11 C 0.055 3.945 12 C -0.415 4.415 13 C 0.054 3.946 14 C -0.435 4.435 15 H 0.101 0.899 16 C -0.157 4.157 17 N -0.399 5.399 18 Si 0.748 3.252 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.179 1.179 22 H 0.104 0.896 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.106 4.624 -0.003 6.888 hybrid contribution 0.161 -0.455 -0.007 0.483 sum -4.946 4.168 -0.009 6.468 Atomic orbital electron populations 1.22803 0.81006 1.02275 1.00147 1.85997 1.18873 1.27857 1.89888 1.19033 0.92005 0.83075 1.06588 1.20738 0.97949 0.92744 1.08277 1.20081 0.93538 0.95464 1.10789 1.19353 0.93267 0.93617 1.01371 1.20023 0.99614 0.92717 0.94802 1.21811 1.01052 0.98927 0.97798 1.21813 1.01051 0.98930 0.97803 1.20892 0.98875 0.90610 1.08810 1.17449 0.88727 0.94196 0.94102 1.20114 0.92775 0.94431 1.34144 1.20845 0.92441 0.96821 0.84503 1.19916 0.90575 0.96239 1.36787 0.89915 1.26539 0.99644 0.98438 0.91089 1.69498 1.13084 1.26313 1.30972 0.86014 0.78558 0.80793 0.79852 1.18730 1.19672 1.17867 0.89583 0.93890 0.93883 0.87846 0.88368 0.91054 0.92710 0.93347 0.92878 0.92868 0.92716 0.93347 0.86486 0.89363 0.88780 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.31 -6.73 9.62 -18.75 -0.18 -6.91 16 3 C 0.04 0.84 6.71 -38.49 -0.26 0.58 16 4 C -0.18 -3.56 9.03 -39.50 -0.36 -3.92 16 5 C -0.18 -3.46 8.70 -39.40 -0.34 -3.81 16 6 C -0.08 -1.51 4.78 -104.67 -0.50 -2.01 16 7 C -0.05 -0.87 3.09 -91.77 -0.28 -1.15 16 8 C -0.14 -1.98 9.01 37.16 0.33 -1.65 16 9 C -0.14 -1.98 9.00 37.16 0.33 -1.65 16 10 C -0.17 -3.98 8.99 -38.99 -0.35 -4.33 16 11 C 0.06 1.39 5.75 -106.68 -0.61 0.78 16 12 C -0.39 -10.42 9.26 -38.18 -0.35 -10.78 16 13 C 0.08 2.00 8.75 -39.36 -0.34 1.66 16 14 C -0.41 -10.49 9.02 -38.49 -0.35 -10.84 16 15 H 0.08 2.07 7.86 -52.48 -0.41 1.66 16 16 C 0.07 1.56 5.51 -17.20 -0.09 1.47 16 17 N -0.78 -18.70 12.85 55.59 0.71 -17.99 16 18 Si 0.92 17.34 29.57 -169.99 -5.03 12.32 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 22 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 24 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 25 H 0.10 1.77 6.29 -52.48 -0.33 1.44 16 26 H 0.10 1.65 7.06 -52.49 -0.37 1.28 16 27 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.73 7.38 -51.93 -0.38 0.34 16 31 H 0.05 0.73 7.35 -51.93 -0.38 0.35 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.12 2.73 5.95 -52.49 -0.31 2.41 16 35 H 0.09 2.41 7.55 -52.49 -0.40 2.01 16 36 H 0.09 2.53 5.36 -52.49 -0.28 2.25 16 37 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -27.39 307.76 -7.36 -34.74 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.32 Total: 7.35 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: -2.18 Total: -34.14 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.71 Total: -17.99 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.18 Total: -6.91 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.39 -7.36 -34.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084481547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.783 kcal (2) G-P(sol) polarization free energy of solvation -27.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds