Wall clock time and date at job start Mon Mar 30 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35683 * 117.00187 * 2 1 4 4 C 1.38446 * 120.18645 * 359.97234 * 3 2 1 5 5 C 1.38258 * 120.15702 * 179.75352 * 4 3 2 6 6 C 1.38717 * 120.52584 * 0.54923 * 5 4 3 7 7 C 1.50699 * 119.81870 * 179.72282 * 6 5 4 8 8 C 1.52997 * 109.47078 * 299.73057 * 7 6 5 9 9 C 1.53006 * 109.46866 * 59.72880 * 7 6 5 10 10 C 1.37610 * 120.36286 * 359.44845 * 6 5 4 11 11 C 1.40411 * 119.83414 * 0.27558 * 10 6 5 12 12 C 1.41843 * 120.25399 * 180.02562 * 11 10 6 13 13 C 1.38290 * 119.99657 * 359.97438 * 12 11 10 14 14 C 1.38779 * 119.99789 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99345 * 0.02562 * 14 13 12 16 16 C 1.40596 * 120.00221 * 179.97438 * 14 13 12 17 17 N 1.30578 * 119.99888 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99877 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46716 * 90.00491 * 18 16 14 20 20 H 1.48496 * 109.47157 * 209.99999 * 18 16 14 21 21 H 1.48492 * 109.47489 * 330.00544 * 18 16 14 22 22 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47176 * 300.00508 * 1 2 3 24 24 H 1.09005 * 109.46877 * 60.00256 * 1 2 3 25 25 H 1.08005 * 119.92260 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.74319 * 180.27406 * 5 4 3 27 27 H 1.08996 * 109.46924 * 179.72310 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 29 29 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 31 31 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 32 32 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 33 33 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 34 34 H 1.07999 * 120.07839 * 180.28981 * 10 6 5 35 35 H 1.07999 * 120.00028 * 179.97438 * 12 11 10 36 36 H 1.07995 * 120.00567 * 359.97438 * 13 12 11 37 37 H 0.96998 * 119.99986 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2948 2.3725 -0.0006 5 6 1.9232 3.6040 0.0046 6 6 3.3077 3.6886 -0.0011 7 6 3.9760 5.0394 -0.0017 8 6 3.5557 5.8157 -1.2513 9 6 3.5555 5.8169 1.2472 10 6 4.0744 2.5459 -0.0005 11 6 3.4522 1.2872 0.0000 12 6 4.2338 0.1036 0.0012 13 6 5.6142 0.1867 0.0013 14 6 6.3790 -0.9714 0.0029 15 1 5.8960 -1.9374 0.0037 16 6 7.7824 -0.8871 0.0025 17 7 8.3663 0.2809 0.0010 18 14 8.8118 -2.4459 0.0054 19 1 9.0843 -2.8617 -1.3939 20 1 10.0965 -2.1894 0.7047 21 1 8.0729 -3.5257 0.7077 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 0.2161 2.3181 -0.0006 26 1 1.3314 4.5075 0.0086 27 1 5.0581 4.9093 -0.0015 28 1 3.8552 5.2618 -2.1410 29 1 4.0387 6.7929 -1.2514 30 1 2.4734 5.9458 -1.2514 31 1 2.4734 5.9468 1.2471 32 1 3.8550 5.2637 2.1375 33 1 4.0392 6.7937 1.2471 34 1 5.1521 2.6171 -0.0002 35 1 3.7509 -0.8624 0.0020 36 1 6.0972 1.1526 0.0000 37 1 9.3345 0.3391 0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084481547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:00 Heat of formation + Delta-G solvation = -51.140704 kcal Electronic energy + Delta-G solvation = -17224.155163 eV Core-core repulsion = 14543.964916 eV Total energy + Delta-G solvation = -2680.190247 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82097 -38.72943 -36.79073 -35.60833 -33.81648 -30.98586 -30.09793 -28.00939 -27.90686 -26.76505 -23.98874 -23.32183 -21.38783 -19.77621 -19.24474 -18.49842 -17.23567 -16.77557 -16.39275 -15.97631 -15.27617 -15.12179 -14.95538 -14.49460 -14.27083 -14.07569 -13.43343 -13.32227 -13.14580 -13.03385 -12.99118 -12.90499 -12.65959 -12.09544 -12.06400 -11.82048 -11.71949 -11.66024 -11.47644 -11.24379 -11.17328 -10.65670 -9.25929 -9.03260 -8.63585 -6.29820 0.40344 0.78634 1.32468 1.32913 1.49907 1.95002 2.09883 2.73140 2.97488 3.51979 3.94380 4.02868 4.20444 4.30517 4.42342 4.44761 4.48880 4.67495 4.69454 4.72023 4.84639 4.87654 4.89243 4.91955 5.03571 5.07012 5.14350 5.21324 5.42787 5.47479 5.49699 5.60972 5.72657 5.86283 6.09643 6.19006 6.27291 6.37092 6.79136 6.85402 7.02011 7.99348 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.006244 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.256138 B = 4483.282502 C = 5830.472702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.344 6.344 3 C 0.029 3.971 4 C -0.177 4.177 5 C -0.160 4.160 6 C -0.079 4.079 7 C -0.056 4.056 8 C -0.134 4.134 9 C -0.134 4.134 10 C -0.185 4.185 11 C 0.014 3.986 12 C -0.416 4.416 13 C 0.056 3.944 14 C -0.445 4.445 15 H 0.078 0.922 16 C 0.028 3.972 17 N -0.808 5.808 18 Si 1.003 2.997 19 H -0.253 1.253 20 H -0.255 1.255 21 H -0.256 1.256 22 H 0.110 0.890 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 6.239 -0.011 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.259 6.259 3 C -0.015 4.015 4 C -0.195 4.195 5 C -0.178 4.178 6 C -0.080 4.080 7 C -0.075 4.075 8 C -0.191 4.191 9 C -0.191 4.191 10 C -0.204 4.204 11 C 0.013 3.987 12 C -0.437 4.437 13 C 0.035 3.965 14 C -0.470 4.470 15 H 0.096 0.904 16 C -0.192 4.192 17 N -0.430 5.430 18 Si 0.820 3.180 19 H -0.177 1.177 20 H -0.178 1.178 21 H -0.179 1.179 22 H 0.129 0.871 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.159 0.841 26 H 0.156 0.844 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.529 6.204 -0.007 9.007 hybrid contribution 0.349 -0.749 -0.006 0.826 sum -6.180 5.455 -0.013 8.243 Atomic orbital electron populations 1.23183 0.77750 1.04603 1.01574 1.85956 1.22323 1.27783 1.89846 1.19205 0.91540 0.84639 1.06159 1.21158 0.99773 0.91814 1.06804 1.20601 0.93323 0.96732 1.07122 1.19759 0.93942 0.94287 0.99983 1.20108 0.98698 0.91368 0.97312 1.21780 1.02057 0.99550 0.95709 1.21782 1.02060 0.99550 0.95712 1.20925 0.98400 0.91519 1.09509 1.17686 0.90399 0.94171 0.96442 1.20027 0.92967 0.94405 1.36298 1.20824 0.92749 0.96722 0.86225 1.20073 0.92270 0.95578 1.39124 0.90411 1.27475 0.99778 1.02170 0.89782 1.69516 1.14261 1.28376 1.30896 0.84898 0.76925 0.75841 0.80315 1.17741 1.17817 1.17944 0.87127 0.92289 0.92280 0.84145 0.84446 0.92391 0.94097 0.90776 0.91596 0.91580 0.94103 0.90778 0.88463 0.91548 0.90155 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.79 16 2 O -0.34 -14.98 9.62 -90.01 -0.87 -15.84 16 3 C 0.03 1.31 6.71 22.98 0.15 1.47 16 4 C -0.18 -6.61 9.03 22.32 0.20 -6.41 16 5 C -0.16 -5.63 8.70 22.39 0.19 -5.43 16 6 C -0.08 -3.10 4.78 -19.90 -0.10 -3.19 16 7 C -0.06 -1.75 3.09 -11.54 -0.04 -1.79 16 8 C -0.13 -3.42 9.01 71.98 0.65 -2.77 16 9 C -0.13 -3.42 9.00 71.98 0.65 -2.77 16 10 C -0.18 -8.90 8.99 22.65 0.20 -8.69 16 11 C 0.01 0.72 5.75 -21.20 -0.12 0.60 16 12 C -0.42 -23.89 9.26 23.17 0.21 -23.68 16 13 C 0.06 3.24 8.75 22.41 0.20 3.44 16 14 C -0.44 -24.42 9.02 22.97 0.21 -24.21 16 15 H 0.08 4.19 7.86 -2.91 -0.02 4.17 16 16 C 0.03 1.38 5.51 85.45 0.47 1.85 16 17 N -0.81 -40.41 12.85 21.95 0.28 -40.13 16 18 Si 1.00 35.96 29.57 68.60 2.03 37.99 16 19 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 20 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 23 H 0.06 1.50 7.66 -2.38 -0.02 1.48 16 24 H 0.06 1.50 7.66 -2.38 -0.02 1.48 16 25 H 0.14 4.18 6.29 -2.91 -0.02 4.16 16 26 H 0.14 3.83 7.06 -2.91 -0.02 3.81 16 27 H 0.06 1.94 7.86 -2.39 -0.02 1.92 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.51 7.38 -2.38 -0.02 1.50 16 31 H 0.07 1.52 7.35 -2.39 -0.02 1.50 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 4.94 5.95 -2.91 -0.02 4.92 16 35 H 0.07 3.97 7.55 -2.91 -0.02 3.94 16 36 H 0.08 4.76 5.36 -2.91 -0.02 4.74 16 37 H 0.31 13.32 8.29 -92.71 -0.77 12.55 16 Total: -1.00 -64.30 307.76 6.49 -57.81 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 1.05 Total: 29.99 kcal Atomic # 6 Polarization: -73.81 SS G_CDS: 4.00 Total: -69.81 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.28 Total: -40.13 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.87 Total: -15.84 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -64.30 6.49 -57.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084481547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.669 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds