Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37916 * 120.07943 * 2 1 4 4 C 1.38424 * 120.15281 * 180.23065 * 3 2 1 5 5 C 1.38462 * 120.31402 * 359.48767 * 4 3 2 6 6 C 1.50697 * 119.92295 * 180.25443 * 5 4 3 7 7 C 1.52998 * 109.47222 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47204 * 119.99864 * 6 5 4 9 9 C 1.52997 * 109.47451 * 239.99821 * 6 5 4 10 10 C 1.37868 * 120.15523 * 0.27522 * 5 4 3 11 11 C 1.39723 * 120.08097 * 179.74152 * 2 1 3 12 12 C 1.47827 * 120.15314 * 359.97438 * 11 2 1 13 13 O 1.21764 * 119.99546 * 353.98894 * 12 11 2 14 14 C 1.41798 * 120.00088 * 173.98220 * 12 11 2 15 15 H 1.08003 * 120.00388 * 0.02562 * 14 12 11 16 16 C 1.40353 * 119.99955 * 180.02562 * 14 12 11 17 17 N 1.30530 * 120.00144 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99842 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47092 * 90.00489 * 18 16 14 20 20 H 1.48508 * 109.46898 * 209.99901 * 18 16 14 21 21 H 1.48499 * 109.47104 * 329.99977 * 18 16 14 22 22 H 1.09003 * 109.46959 * 263.60055 * 1 2 3 23 23 H 1.08998 * 109.46659 * 23.60621 * 1 2 3 24 24 H 1.09000 * 109.46881 * 143.60609 * 1 2 3 25 25 H 1.07991 * 119.92126 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.84045 * 179.76025 * 4 3 2 27 27 H 1.08999 * 109.47314 * 59.99427 * 7 6 5 28 28 H 1.08996 * 109.47697 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.46784 * 300.00052 * 7 6 5 30 30 H 1.09004 * 109.47090 * 60.00292 * 8 6 5 31 31 H 1.09001 * 109.47217 * 179.97438 * 8 6 5 32 32 H 1.09006 * 109.47039 * 300.00227 * 8 6 5 33 33 H 1.09002 * 109.46902 * 59.99735 * 9 6 5 34 34 H 1.08992 * 109.47491 * 179.97438 * 9 6 5 35 35 H 1.09003 * 109.46940 * 300.00406 * 9 6 5 36 36 H 1.07996 * 120.08065 * 179.97438 * 10 5 4 37 37 H 0.96997 * 119.99713 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1934 0.0000 4 6 3.5825 1.1952 -0.0048 5 6 4.2829 0.0008 0.0010 6 6 5.7898 0.0131 0.0015 7 6 6.2881 1.4596 -0.0044 8 6 6.3052 -0.6981 1.2543 9 6 6.3062 -0.7098 -1.2441 10 6 3.6049 -1.1996 0.0060 11 6 2.2073 -1.2090 0.0055 12 6 1.4734 -2.4923 0.0118 13 8 0.2609 -2.4995 0.1228 14 6 2.1815 -3.7146 -0.1114 15 1 3.2570 -3.7082 -0.2095 16 6 1.4846 -4.9329 -0.1059 17 7 0.1847 -4.9407 0.0121 18 14 2.4175 -6.5432 -0.2675 19 1 2.7915 -7.0363 1.0824 20 1 1.5564 -7.5487 -0.9407 21 1 3.6460 -6.3250 -1.0728 22 1 -0.3633 -0.1145 1.0213 23 1 -0.3632 0.9417 -0.4115 24 1 -0.3633 -0.8272 -0.6098 25 1 1.6583 2.1287 -0.0004 26 1 4.1186 2.1327 -0.0087 27 1 5.9202 1.9743 0.8832 28 1 7.3780 1.4686 -0.0036 29 1 5.9209 1.9667 -0.8967 30 1 5.9503 -1.7287 1.2590 31 1 7.3952 -0.6896 1.2544 32 1 5.9373 -0.1831 2.1418 33 1 5.9390 -0.2032 -2.1366 34 1 7.3961 -0.7006 -1.2440 35 1 5.9511 -1.7404 -1.2394 36 1 4.1524 -2.1305 0.0101 37 1 -0.2968 -5.7827 0.0163 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084915223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = -39.954025 kcal Electronic energy + Delta-G solvation = -17892.839735 eV Core-core repulsion = 15213.134579 eV Total energy + Delta-G solvation = -2679.705156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39458 -37.05647 -35.39603 -32.73972 -31.06169 -30.48583 -27.45167 -27.01885 -26.76311 -25.65541 -22.42306 -21.28894 -20.20252 -18.08017 -16.42553 -15.93253 -15.07119 -14.74240 -14.15984 -14.05922 -13.55291 -13.32901 -13.12594 -13.03250 -12.71904 -12.20646 -11.96641 -11.66421 -11.52963 -11.50684 -11.20014 -11.14399 -11.06691 -10.99850 -10.79619 -10.54999 -10.48960 -10.35484 -10.22567 -9.82446 -8.98621 -7.98331 -7.68873 -7.32553 -6.27034 -4.90205 1.94007 2.13251 3.03931 3.11749 3.14879 3.99714 4.08899 4.64392 4.91161 5.03571 5.21467 5.54278 5.60643 5.68053 5.70582 5.78080 5.81253 5.92079 5.93257 6.01077 6.08063 6.09397 6.14836 6.27336 6.32247 6.39094 6.52666 6.57710 6.65284 6.76401 6.87951 7.16672 7.17893 7.20266 7.34789 7.55600 7.82090 8.04950 8.78801 8.84903 10.30544 10.52743 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.008051 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.108136 B = 3476.958306 C = 4649.251305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.025 4.025 7 C -0.139 4.139 8 C -0.138 4.138 9 C -0.138 4.138 10 C -0.083 4.083 11 C -0.107 4.107 12 C 0.387 3.613 13 O -0.533 6.533 14 C -0.516 4.516 15 H 0.072 0.928 16 C 0.081 3.919 17 N -0.736 5.736 18 Si 0.903 3.097 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.261 1.261 22 H 0.062 0.938 23 H 0.035 0.965 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.069 7.649 -0.345 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.061 4.061 3 C -0.157 4.157 4 C -0.146 4.146 5 C -0.099 4.099 6 C -0.025 4.025 7 C -0.197 4.197 8 C -0.195 4.195 9 C -0.195 4.195 10 C -0.101 4.101 11 C -0.108 4.108 12 C 0.284 3.716 13 O -0.423 6.423 14 C -0.547 4.547 15 H 0.090 0.910 16 C -0.142 4.142 17 N -0.364 5.364 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.185 1.185 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.313 7.595 -0.282 12.021 hybrid contribution 0.642 -0.692 -0.049 0.945 sum 9.955 6.904 -0.332 12.119 Atomic orbital electron populations 1.20953 0.91073 1.01531 1.03013 1.20216 0.96565 0.92190 0.97176 1.20896 0.94052 0.97061 1.03717 1.21020 0.93845 0.97163 1.02567 1.19644 0.93955 0.93458 1.02836 1.19409 0.91619 0.95635 0.95868 1.21924 1.00227 0.95778 1.01729 1.21890 0.99932 1.00915 0.96798 1.21887 0.99923 1.00865 0.96857 1.21298 0.93820 0.97032 0.97984 1.21680 0.93956 0.97323 0.97863 1.18125 0.88387 0.85790 0.79332 1.90424 1.15221 1.87936 1.48731 1.20932 0.95309 0.91741 1.46757 0.90952 1.25985 0.94611 1.00870 0.92771 1.69948 1.07728 1.27843 1.30923 0.86419 0.80448 0.81110 0.79289 1.19394 1.20139 1.18507 0.91894 0.94554 0.88169 0.87197 0.86810 0.92528 0.92946 0.92517 0.92045 0.92946 0.92717 0.92711 0.92954 0.92034 0.85678 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 8.73 36.00 0.31 -2.02 16 2 C -0.06 -1.33 5.92 -104.19 -0.62 -1.95 16 3 C -0.14 -2.55 9.66 -39.63 -0.38 -2.94 16 4 C -0.13 -2.15 8.98 -39.43 -0.35 -2.51 16 5 C -0.10 -1.72 4.76 -104.68 -0.50 -2.22 16 6 C -0.03 -0.35 0.85 -155.67 -0.13 -0.48 16 7 C -0.14 -1.62 7.13 37.16 0.26 -1.35 16 8 C -0.14 -1.82 8.28 37.16 0.31 -1.51 16 9 C -0.14 -1.82 8.29 37.16 0.31 -1.51 16 10 C -0.08 -1.72 8.09 -39.15 -0.32 -2.04 16 11 C -0.11 -2.56 5.88 -104.85 -0.62 -3.18 16 12 C 0.39 10.89 6.85 -34.30 -0.23 10.66 16 13 O -0.53 -16.35 11.89 5.13 0.06 -16.29 16 14 C -0.52 -14.13 8.85 -37.43 -0.33 -14.46 16 15 H 0.07 1.81 6.07 -52.48 -0.32 1.50 16 16 C 0.08 2.16 5.50 -17.31 -0.10 2.06 16 17 N -0.74 -20.94 11.73 55.57 0.65 -20.29 16 18 Si 0.90 19.21 29.56 -169.99 -5.03 14.18 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 24 H 0.10 2.45 5.86 -51.93 -0.30 2.15 16 25 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.11 1.59 5.87 -52.49 -0.31 1.28 16 27 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 30 H 0.06 0.87 7.38 -51.93 -0.38 0.49 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.87 7.38 -51.93 -0.38 0.49 16 36 H 0.13 2.55 5.28 -52.49 -0.28 2.27 16 37 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -30.59 298.38 -7.46 -38.05 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.27 Total: 3.30 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.38 Total: -23.46 kcal Atomic # 7 Polarization: -20.94 SS G_CDS: 0.65 Total: -20.29 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.06 Total: -16.29 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.59 -7.46 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084915223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.903 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds