Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37916 * 120.07943 * 2 1 4 4 C 1.38424 * 120.15281 * 180.23065 * 3 2 1 5 5 C 1.38462 * 120.31402 * 359.48767 * 4 3 2 6 6 C 1.50697 * 119.92295 * 180.25443 * 5 4 3 7 7 C 1.52998 * 109.47222 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47204 * 119.99864 * 6 5 4 9 9 C 1.52997 * 109.47451 * 239.99821 * 6 5 4 10 10 C 1.37868 * 120.15523 * 0.27522 * 5 4 3 11 11 C 1.39723 * 120.08097 * 179.74152 * 2 1 3 12 12 C 1.47827 * 120.15314 * 359.97438 * 11 2 1 13 13 O 1.21764 * 119.99546 * 353.98894 * 12 11 2 14 14 C 1.41798 * 120.00088 * 173.98220 * 12 11 2 15 15 H 1.08003 * 120.00388 * 0.02562 * 14 12 11 16 16 C 1.40353 * 119.99955 * 180.02562 * 14 12 11 17 17 N 1.30530 * 120.00144 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99842 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47092 * 90.00489 * 18 16 14 20 20 H 1.48508 * 109.46898 * 209.99901 * 18 16 14 21 21 H 1.48499 * 109.47104 * 329.99977 * 18 16 14 22 22 H 1.09003 * 109.46959 * 263.60055 * 1 2 3 23 23 H 1.08998 * 109.46659 * 23.60621 * 1 2 3 24 24 H 1.09000 * 109.46881 * 143.60609 * 1 2 3 25 25 H 1.07991 * 119.92126 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.84045 * 179.76025 * 4 3 2 27 27 H 1.08999 * 109.47314 * 59.99427 * 7 6 5 28 28 H 1.08996 * 109.47697 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.46784 * 300.00052 * 7 6 5 30 30 H 1.09004 * 109.47090 * 60.00292 * 8 6 5 31 31 H 1.09001 * 109.47217 * 179.97438 * 8 6 5 32 32 H 1.09006 * 109.47039 * 300.00227 * 8 6 5 33 33 H 1.09002 * 109.46902 * 59.99735 * 9 6 5 34 34 H 1.08992 * 109.47491 * 179.97438 * 9 6 5 35 35 H 1.09003 * 109.46940 * 300.00406 * 9 6 5 36 36 H 1.07996 * 120.08065 * 179.97438 * 10 5 4 37 37 H 0.96997 * 119.99713 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1934 0.0000 4 6 3.5825 1.1952 -0.0048 5 6 4.2829 0.0008 0.0010 6 6 5.7898 0.0131 0.0015 7 6 6.2881 1.4596 -0.0044 8 6 6.3052 -0.6981 1.2543 9 6 6.3062 -0.7098 -1.2441 10 6 3.6049 -1.1996 0.0060 11 6 2.2073 -1.2090 0.0055 12 6 1.4734 -2.4923 0.0118 13 8 0.2609 -2.4995 0.1228 14 6 2.1815 -3.7146 -0.1114 15 1 3.2570 -3.7082 -0.2095 16 6 1.4846 -4.9329 -0.1059 17 7 0.1847 -4.9407 0.0121 18 14 2.4175 -6.5432 -0.2675 19 1 2.7915 -7.0363 1.0824 20 1 1.5564 -7.5487 -0.9407 21 1 3.6460 -6.3250 -1.0728 22 1 -0.3633 -0.1145 1.0213 23 1 -0.3632 0.9417 -0.4115 24 1 -0.3633 -0.8272 -0.6098 25 1 1.6583 2.1287 -0.0004 26 1 4.1186 2.1327 -0.0087 27 1 5.9202 1.9743 0.8832 28 1 7.3780 1.4686 -0.0036 29 1 5.9209 1.9667 -0.8967 30 1 5.9503 -1.7287 1.2590 31 1 7.3952 -0.6896 1.2544 32 1 5.9373 -0.1831 2.1418 33 1 5.9390 -0.2032 -2.1366 34 1 7.3961 -0.7006 -1.2440 35 1 5.9511 -1.7404 -1.2394 36 1 4.1524 -2.1305 0.0101 37 1 -0.2968 -5.7827 0.0163 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084915223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = -56.625004 kcal Electronic energy + Delta-G solvation = -17893.562643 eV Core-core repulsion = 15213.134579 eV Total energy + Delta-G solvation = -2680.428064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88256 -38.79259 -36.96214 -34.80102 -32.65266 -32.07643 -29.05740 -28.08548 -28.04726 -27.34299 -24.10236 -22.79860 -21.83146 -19.57681 -18.37250 -17.51479 -16.74054 -16.24162 -15.72519 -15.20753 -15.10381 -14.86400 -14.74761 -14.44065 -14.38950 -13.62240 -13.35793 -13.27697 -12.98642 -12.82994 -12.69492 -12.53313 -12.52118 -12.42219 -12.31905 -12.29144 -12.05064 -11.70404 -11.48757 -11.25089 -11.00088 -9.58207 -9.41689 -9.24314 -8.30244 -7.06368 0.31326 0.60127 1.34648 1.35518 1.51155 2.18689 2.25074 2.90398 3.71781 3.75683 3.92049 4.17879 4.20590 4.23678 4.26597 4.47837 4.57104 4.64343 4.82195 4.83958 4.89604 4.93376 4.96550 5.05157 5.09676 5.10067 5.17818 5.23669 5.28545 5.29749 5.45987 5.50193 5.51520 5.68673 5.81943 5.88827 6.00445 6.27232 6.70149 6.81222 8.25977 8.48708 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.008051 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.108136 B = 3476.958306 C = 4649.251305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.114 4.114 5 C -0.092 4.092 6 C -0.027 4.027 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.138 4.138 10 C -0.090 4.090 11 C -0.150 4.150 12 C 0.363 3.637 13 O -0.576 6.576 14 C -0.546 4.546 15 H 0.086 0.914 16 C 0.026 3.974 17 N -0.786 5.786 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.248 1.248 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.145 0.855 26 H 0.157 0.843 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.117 0.883 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.320 9.271 -0.537 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.131 4.131 5 C -0.092 4.092 6 C -0.027 4.027 7 C -0.194 4.194 8 C -0.195 4.195 9 C -0.195 4.195 10 C -0.108 4.108 11 C -0.151 4.151 12 C 0.262 3.738 13 O -0.470 6.470 14 C -0.576 4.576 15 H 0.104 0.896 16 C -0.193 4.193 17 N -0.416 5.416 18 Si 0.808 3.192 19 H -0.182 1.182 20 H -0.191 1.191 21 H -0.171 1.171 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.162 0.838 26 H 0.174 0.826 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.135 0.865 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.580 9.234 -0.476 15.612 hybrid contribution -0.327 -1.083 0.015 1.131 sum 12.253 8.151 -0.460 14.723 Atomic orbital electron populations 1.20763 0.91585 1.01690 1.01584 1.20378 0.96618 0.92994 0.98640 1.21237 0.94970 0.96796 1.02022 1.21535 0.93404 0.98551 0.99642 1.20083 0.96312 0.92333 1.00454 1.19532 0.88822 0.97912 0.96395 1.21916 1.01759 0.93447 1.02285 1.21892 1.01628 0.99622 0.96368 1.21888 1.01614 0.99563 0.96430 1.21263 0.92511 0.98419 0.98601 1.21428 0.95407 0.96352 1.01955 1.18818 0.88328 0.88189 0.78429 1.90382 1.16860 1.89164 1.50613 1.21396 0.96196 0.92626 1.47412 0.89602 1.27192 0.95480 1.05218 0.91401 1.70084 1.10005 1.29526 1.31952 0.85137 0.79044 0.75151 0.79869 1.18237 1.19092 1.17135 0.93231 0.90834 0.92289 0.83757 0.82592 0.91937 0.90738 0.91900 0.93977 0.90263 0.92910 0.92871 0.90277 0.93977 0.86504 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.44 8.73 71.24 0.62 -3.82 16 2 C -0.09 -3.81 5.92 -19.58 -0.12 -3.93 16 3 C -0.13 -4.54 9.66 22.24 0.21 -4.33 16 4 C -0.11 -3.43 8.98 22.37 0.20 -3.23 16 5 C -0.09 -3.02 4.76 -19.90 -0.09 -3.11 16 6 C -0.03 -0.65 0.85 -52.93 -0.05 -0.70 16 7 C -0.14 -2.48 7.13 71.98 0.51 -1.97 16 8 C -0.14 -3.28 8.28 71.98 0.60 -2.68 16 9 C -0.14 -3.27 8.29 71.98 0.60 -2.67 16 10 C -0.09 -3.77 8.09 22.55 0.18 -3.59 16 11 C -0.15 -7.53 5.88 -20.01 -0.12 -7.65 16 12 C 0.36 21.82 6.85 25.69 0.18 22.00 16 13 O -0.58 -38.19 11.89 -4.55 -0.05 -38.24 16 14 C -0.55 -31.41 8.85 23.67 0.21 -31.20 16 15 H 0.09 4.50 6.07 -2.91 -0.02 4.48 16 16 C 0.03 1.43 5.50 85.40 0.47 1.90 16 17 N -0.79 -47.11 11.73 21.89 0.26 -46.85 16 18 Si 0.99 40.17 29.56 68.60 2.03 42.19 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 22 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.07 2.60 8.04 -2.39 -0.02 2.58 16 24 H 0.06 3.11 5.86 -2.39 -0.01 3.10 16 25 H 0.14 3.92 8.06 -2.92 -0.02 3.90 16 26 H 0.16 3.45 5.87 -2.91 -0.02 3.43 16 27 H 0.06 1.08 7.51 -2.39 -0.02 1.06 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.08 7.51 -2.39 -0.02 1.06 16 30 H 0.04 1.15 7.38 -2.38 -0.02 1.13 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.15 7.38 -2.39 -0.02 1.13 16 36 H 0.12 4.96 5.28 -2.91 -0.02 4.94 16 37 H 0.28 15.07 8.29 -92.71 -0.77 14.30 16 Total: -1.00 -72.39 298.38 6.70 -65.69 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.06 Total: 22.17 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.41 Total: -44.97 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.26 Total: -46.85 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.05 Total: -38.24 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.19 kcal Total: -72.39 6.70 -65.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084915223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.069 kcal (2) G-P(sol) polarization free energy of solvation -72.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds