Wall clock time and date at job start Mon Mar 30 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38822 * 119.73519 * 2 1 4 4 C 1.38301 * 120.59768 * 180.02562 * 3 2 1 5 5 C 1.38451 * 120.04807 * 359.97438 * 4 3 2 6 6 O 1.35638 * 120.26201 * 179.97438 * 5 4 3 7 7 C 1.42901 * 117.00270 * 0.02810 * 6 5 4 8 8 C 1.52999 * 109.47407 * 179.97438 * 7 6 5 9 9 C 1.53787 * 113.61364 * 274.13630 * 8 7 6 10 10 C 1.53955 * 87.01629 * 220.04392 * 9 8 7 11 11 C 1.53778 * 113.61531 * 176.52857 * 8 7 6 12 12 C 1.41313 * 119.47114 * 0.02562 * 5 4 3 13 13 C 1.41156 * 120.29026 * 179.97438 * 12 5 4 14 14 H 1.07998 * 119.99779 * 24.75577 * 13 12 5 15 15 C 1.39938 * 120.00057 * 204.75622 * 13 12 5 16 16 N 1.30868 * 120.00071 * 17.88429 * 15 13 12 17 17 Si 1.86801 * 119.99821 * 197.89071 * 15 13 12 18 18 H 1.48496 * 109.47361 * 90.00033 * 17 15 13 19 19 H 1.48501 * 109.46946 * 209.99747 * 17 15 13 20 20 H 1.48498 * 109.47021 * 329.99643 * 17 15 13 21 21 C 1.36496 * 119.73164 * 180.28940 * 2 1 3 22 22 H 1.08997 * 109.47512 * 89.99727 * 1 2 3 23 23 H 1.09009 * 109.47090 * 209.99849 * 1 2 3 24 24 H 1.09001 * 109.47235 * 329.99679 * 1 2 3 25 25 H 1.08003 * 119.69712 * 359.97438 * 3 2 1 26 26 H 1.07994 * 119.97625 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.47018 * 299.99608 * 7 6 5 28 28 H 1.08999 * 109.47485 * 59.99516 * 7 6 5 29 29 H 1.08998 * 112.84779 * 45.32665 * 8 7 6 30 30 H 1.09000 * 113.61342 * 334.56621 * 9 8 7 31 31 H 1.08997 * 113.61368 * 105.46777 * 9 8 7 32 32 H 1.08999 * 113.54322 * 270.80911 * 10 9 8 33 33 H 1.09004 * 113.66466 * 139.93104 * 10 9 8 34 34 H 1.09006 * 113.61504 * 254.52576 * 11 8 7 35 35 H 1.08999 * 113.61831 * 25.34679 * 11 8 7 36 36 H 0.96998 * 119.99989 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.03387 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1955 1.2054 0.0000 4 6 3.5783 1.2262 -0.0005 5 6 4.2895 0.0384 -0.0005 6 8 5.6458 0.0537 -0.0016 7 6 6.2802 1.3342 -0.0020 8 6 7.7992 1.1509 -0.0026 9 6 8.3991 0.9765 1.4027 10 6 9.5606 1.8696 0.9300 11 6 8.5792 2.4734 -0.0884 12 6 3.5912 -1.1901 -0.0005 13 6 4.2989 -2.4114 -0.0011 14 1 5.3046 -2.4528 0.3902 15 6 3.6973 -3.5685 -0.5086 16 7 2.6498 -3.4737 -1.2874 17 14 4.3894 -5.2483 -0.0743 18 1 3.7347 -5.7491 1.1609 19 1 4.1305 -6.1938 -1.1898 20 1 5.8529 -5.1375 0.1511 21 6 2.1839 -1.1853 -0.0060 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8901 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6462 2.1354 -0.0004 26 1 4.1038 2.1697 -0.0009 27 1 5.9804 1.8879 -0.8918 28 1 5.9817 1.8879 0.8881 29 1 8.1345 0.3990 -0.7169 30 1 7.7972 1.4249 2.1931 31 1 8.6976 -0.0478 1.6259 32 1 10.3785 1.3137 0.4716 33 1 9.9005 2.5804 1.6832 34 1 9.0230 2.6559 -1.0671 35 1 8.0262 3.3321 0.2923 36 1 2.2331 -4.2757 -1.6395 37 1 1.6400 -2.1183 -0.0103 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215790347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:07 Heat of formation + Delta-G solvation = -16.233625 kcal Electronic energy + Delta-G solvation = -17495.232725 eV Core-core repulsion = 14816.556163 eV Total energy + Delta-G solvation = -2678.676562 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.15623 -38.09071 -36.09290 -33.71898 -30.85465 -29.60827 -28.29083 -25.61656 -25.49549 -24.63882 -22.88951 -20.80678 -19.61316 -19.22576 -17.18865 -16.44900 -15.73345 -15.18948 -14.83725 -14.49144 -13.91094 -13.70316 -12.92899 -12.72528 -12.59312 -12.38859 -12.35305 -12.05468 -11.56146 -11.47049 -11.29262 -10.98842 -10.94897 -10.65065 -10.43770 -10.37480 -10.23345 -10.05659 -9.67549 -9.52654 -9.31053 -9.08183 -7.41380 -6.85459 -6.59652 -4.17461 2.79994 3.03320 3.12665 3.17510 3.24852 4.01259 4.23268 4.66843 4.72603 4.80758 4.92268 5.13064 5.59713 5.65539 5.71516 5.79396 5.81924 5.87794 5.95530 6.03379 6.06769 6.18467 6.19415 6.30089 6.37934 6.45063 6.49370 6.63374 6.69459 7.03909 7.18889 7.40036 7.46584 7.80534 7.82387 8.15392 8.30288 8.50508 8.77931 8.92764 9.16725 10.27844 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.007528 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.664824 B = 3718.635819 C = 5208.894705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.101 4.101 3 C -0.211 4.211 4 C -0.177 4.177 5 C 0.010 3.990 6 O -0.306 6.306 7 C 0.074 3.926 8 C -0.107 4.107 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.133 4.133 12 C 0.098 3.902 13 C -0.446 4.446 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.798 5.798 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.262 1.262 21 C -0.144 4.144 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.279 0.721 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 6.256 2.384 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.231 4.231 4 C -0.196 4.196 5 C -0.034 4.034 6 O -0.221 6.221 7 C -0.002 4.002 8 C -0.126 4.126 9 C -0.171 4.171 10 C -0.180 4.180 11 C -0.170 4.170 12 C 0.095 3.905 13 C -0.475 4.475 14 H 0.100 0.900 15 C -0.143 4.143 16 N -0.424 5.424 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.163 4.163 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.155 5.938 2.235 8.840 hybrid contribution 0.130 -0.438 0.011 0.457 sum 6.285 5.500 2.246 8.648 Atomic orbital electron populations 1.20595 0.93836 1.00471 1.00504 1.19205 0.94107 0.93794 1.02996 1.19976 0.92929 0.95691 1.14512 1.20591 0.94933 0.95182 1.08908 1.19192 0.80720 0.94089 1.09396 1.85945 1.18006 1.27914 1.90265 1.22469 0.91554 0.86359 0.99806 1.22526 0.93161 0.98261 0.98605 1.22969 0.97018 1.00298 0.96797 1.22839 0.96915 0.99317 0.98907 1.22889 0.97650 0.96860 0.99626 1.17054 0.91432 0.89912 0.92068 1.19416 1.01309 0.91858 1.34950 0.90030 1.25885 0.94363 1.01300 0.92772 1.69850 1.18722 1.31194 1.22630 0.86327 0.80516 0.81077 0.78901 1.19376 1.20441 1.18615 1.20748 0.93175 0.96452 1.05944 0.92918 0.92942 0.93515 0.89466 0.88882 0.93545 0.93565 0.88401 0.90186 0.91244 0.90313 0.91675 0.91431 0.90151 0.91050 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.99 36.00 0.36 -1.53 16 2 C -0.10 -2.40 5.84 -105.04 -0.61 -3.02 16 3 C -0.21 -4.90 9.68 -39.34 -0.38 -5.28 16 4 C -0.18 -4.15 9.04 -39.48 -0.36 -4.51 16 5 C 0.01 0.26 6.72 -38.34 -0.26 0.01 16 6 O -0.31 -7.26 9.43 -18.61 -0.18 -7.43 16 7 C 0.07 1.35 4.57 37.16 0.17 1.52 16 8 C -0.11 -1.60 4.00 -89.81 -0.36 -1.96 16 9 C -0.13 -1.80 7.65 -25.82 -0.20 -2.00 16 10 C -0.14 -1.55 8.09 -25.83 -0.21 -1.76 16 11 C -0.13 -1.54 7.65 -25.92 -0.20 -1.74 16 12 C 0.10 2.72 5.58 -106.68 -0.60 2.12 16 13 C -0.45 -12.34 8.72 -37.84 -0.33 -12.67 16 14 H 0.08 2.25 7.66 -52.49 -0.40 1.85 16 15 C 0.07 1.90 5.14 -17.33 -0.09 1.81 16 16 N -0.80 -21.09 10.96 55.55 0.61 -20.48 16 17 Si 0.91 19.34 29.60 -169.99 -5.03 14.31 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 C -0.14 -3.81 8.26 -39.27 -0.32 -4.14 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 24 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 25 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 26 H 0.09 1.92 6.31 -52.49 -0.33 1.59 16 27 H 0.05 0.82 7.67 -51.93 -0.40 0.43 16 28 H 0.05 0.80 7.40 -51.93 -0.38 0.42 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.12 3.36 6.16 -52.49 -0.32 3.04 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -28.78 304.80 -8.99 -37.77 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.60 Total: 4.39 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: -3.38 Total: -33.14 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.61 Total: -20.48 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.18 Total: -7.43 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.78 -8.99 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.534 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds