Wall clock time and date at job start Mon Mar 30 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38822 * 119.73519 * 2 1 4 4 C 1.38301 * 120.59768 * 180.02562 * 3 2 1 5 5 C 1.38451 * 120.04807 * 359.97438 * 4 3 2 6 6 O 1.35638 * 120.26201 * 179.97438 * 5 4 3 7 7 C 1.42901 * 117.00270 * 0.02810 * 6 5 4 8 8 C 1.52999 * 109.47407 * 179.97438 * 7 6 5 9 9 C 1.53787 * 113.61364 * 274.13630 * 8 7 6 10 10 C 1.53955 * 87.01629 * 220.04392 * 9 8 7 11 11 C 1.53778 * 113.61531 * 176.52857 * 8 7 6 12 12 C 1.41313 * 119.47114 * 0.02562 * 5 4 3 13 13 C 1.41156 * 120.29026 * 179.97438 * 12 5 4 14 14 H 1.07998 * 119.99779 * 24.75577 * 13 12 5 15 15 C 1.39938 * 120.00057 * 204.75622 * 13 12 5 16 16 N 1.30868 * 120.00071 * 17.88429 * 15 13 12 17 17 Si 1.86801 * 119.99821 * 197.89071 * 15 13 12 18 18 H 1.48496 * 109.47361 * 90.00033 * 17 15 13 19 19 H 1.48501 * 109.46946 * 209.99747 * 17 15 13 20 20 H 1.48498 * 109.47021 * 329.99643 * 17 15 13 21 21 C 1.36496 * 119.73164 * 180.28940 * 2 1 3 22 22 H 1.08997 * 109.47512 * 89.99727 * 1 2 3 23 23 H 1.09009 * 109.47090 * 209.99849 * 1 2 3 24 24 H 1.09001 * 109.47235 * 329.99679 * 1 2 3 25 25 H 1.08003 * 119.69712 * 359.97438 * 3 2 1 26 26 H 1.07994 * 119.97625 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.47018 * 299.99608 * 7 6 5 28 28 H 1.08999 * 109.47485 * 59.99516 * 7 6 5 29 29 H 1.08998 * 112.84779 * 45.32665 * 8 7 6 30 30 H 1.09000 * 113.61342 * 334.56621 * 9 8 7 31 31 H 1.08997 * 113.61368 * 105.46777 * 9 8 7 32 32 H 1.08999 * 113.54322 * 270.80911 * 10 9 8 33 33 H 1.09004 * 113.66466 * 139.93104 * 10 9 8 34 34 H 1.09006 * 113.61504 * 254.52576 * 11 8 7 35 35 H 1.08999 * 113.61831 * 25.34679 * 11 8 7 36 36 H 0.96998 * 119.99989 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.03387 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1955 1.2054 0.0000 4 6 3.5783 1.2262 -0.0005 5 6 4.2895 0.0384 -0.0005 6 8 5.6458 0.0537 -0.0016 7 6 6.2802 1.3342 -0.0020 8 6 7.7992 1.1509 -0.0026 9 6 8.3991 0.9765 1.4027 10 6 9.5606 1.8696 0.9300 11 6 8.5792 2.4734 -0.0884 12 6 3.5912 -1.1901 -0.0005 13 6 4.2989 -2.4114 -0.0011 14 1 5.3046 -2.4528 0.3902 15 6 3.6973 -3.5685 -0.5086 16 7 2.6498 -3.4737 -1.2874 17 14 4.3894 -5.2483 -0.0743 18 1 3.7347 -5.7491 1.1609 19 1 4.1305 -6.1938 -1.1898 20 1 5.8529 -5.1375 0.1511 21 6 2.1839 -1.1853 -0.0060 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8901 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6462 2.1354 -0.0004 26 1 4.1038 2.1697 -0.0009 27 1 5.9804 1.8879 -0.8918 28 1 5.9817 1.8879 0.8881 29 1 8.1345 0.3990 -0.7169 30 1 7.7972 1.4249 2.1931 31 1 8.6976 -0.0478 1.6259 32 1 10.3785 1.3137 0.4716 33 1 9.9005 2.5804 1.6832 34 1 9.0230 2.6559 -1.0671 35 1 8.0262 3.3321 0.2923 36 1 2.2331 -4.2757 -1.6395 37 1 1.6400 -2.1183 -0.0103 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215790347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:07 Heat of formation + Delta-G solvation = -30.255311 kcal Electronic energy + Delta-G solvation = -17495.840751 eV Core-core repulsion = 14816.556163 eV Total energy + Delta-G solvation = -2679.284588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69572 -39.51844 -37.81920 -35.65278 -32.62173 -31.50433 -29.67458 -27.49992 -26.59532 -26.33572 -24.24570 -22.57198 -21.42554 -20.33711 -19.09127 -18.27783 -17.23450 -16.70480 -16.42743 -15.90499 -15.54518 -15.28227 -14.69579 -14.44161 -14.27381 -13.85596 -13.47956 -13.34620 -13.28804 -13.09933 -12.85678 -12.66651 -12.44426 -12.31140 -12.13426 -11.62762 -11.51099 -11.42391 -11.23117 -11.18918 -11.00042 -10.95067 -9.38137 -8.76635 -8.49936 -6.21222 0.93804 1.10163 1.36187 1.49516 1.50155 2.22504 2.70187 2.74898 3.63590 3.70608 3.74128 3.89573 3.99742 4.25043 4.35207 4.45848 4.50597 4.54792 4.63891 4.75915 4.82878 4.84149 4.93520 4.95695 5.06535 5.08359 5.11062 5.19025 5.27146 5.32527 5.48003 5.55363 5.59298 5.87612 5.91390 6.22932 6.34448 6.57596 6.82184 6.93700 7.27764 8.37233 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.007528 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.664824 B = 3718.635819 C = 5208.894705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.181 4.181 5 C -0.006 4.006 6 O -0.332 6.332 7 C 0.069 3.931 8 C -0.120 4.120 9 C -0.141 4.141 10 C -0.127 4.127 11 C -0.120 4.120 12 C 0.058 3.942 13 C -0.484 4.484 14 H 0.065 0.935 15 C 0.034 3.966 16 N -0.828 5.828 17 Si 0.978 3.022 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.264 1.264 21 C -0.166 4.166 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.287 0.713 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 7.672 2.654 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.227 4.227 4 C -0.200 4.200 5 C -0.050 4.050 6 O -0.247 6.247 7 C -0.006 4.006 8 C -0.138 4.138 9 C -0.179 4.179 10 C -0.164 4.164 11 C -0.157 4.157 12 C 0.055 3.945 13 C -0.514 4.514 14 H 0.083 0.917 15 C -0.179 4.179 16 N -0.455 5.455 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.188 1.188 21 C -0.185 4.185 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.484 7.379 2.504 10.137 hybrid contribution 0.011 -0.728 -0.081 0.733 sum 6.496 6.650 2.423 9.607 Atomic orbital electron populations 1.20607 0.90621 1.02069 1.01623 1.19692 0.96676 0.93126 1.01672 1.20455 0.93067 0.96796 1.12334 1.20953 0.95466 0.95622 1.07914 1.19406 0.81870 0.94358 1.09372 1.85917 1.17295 1.31315 1.90178 1.22814 0.93182 0.84440 1.00200 1.22657 0.91175 1.00507 0.99459 1.23029 0.98437 1.00479 0.95921 1.22792 0.96050 0.98759 0.98840 1.22884 0.96910 0.95157 1.00779 1.17493 0.92516 0.91087 0.93392 1.19499 1.01200 0.93483 1.37246 0.91657 1.26674 0.94634 1.04631 0.92000 1.69889 1.19809 1.32608 1.23167 0.85264 0.79457 0.76189 0.79150 1.18444 1.18919 1.18826 1.20752 0.93027 0.97073 1.07682 0.91902 0.92694 0.90613 0.85985 0.85972 0.93218 0.92703 0.89812 0.90251 0.92401 0.89396 0.89634 0.90058 0.89036 0.90243 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.41 9.99 71.23 0.71 -2.70 16 2 C -0.11 -5.25 5.84 -20.13 -0.12 -5.37 16 3 C -0.21 -9.21 9.68 22.42 0.22 -8.99 16 4 C -0.18 -8.32 9.04 22.34 0.20 -8.12 16 5 C -0.01 -0.29 6.72 23.08 0.16 -0.14 16 6 O -0.33 -16.25 9.43 -89.52 -0.84 -17.09 16 7 C 0.07 2.50 4.57 71.98 0.33 2.82 16 8 C -0.12 -3.52 4.00 -10.27 -0.04 -3.56 16 9 C -0.14 -3.72 7.65 31.18 0.24 -3.48 16 10 C -0.13 -2.45 8.09 31.18 0.25 -2.20 16 11 C -0.12 -2.50 7.65 31.12 0.24 -2.26 16 12 C 0.06 3.33 5.58 -21.20 -0.12 3.21 16 13 C -0.48 -28.26 8.72 23.40 0.20 -28.05 16 14 H 0.07 3.85 7.66 -2.91 -0.02 3.83 16 15 C 0.03 1.83 5.14 85.25 0.44 2.27 16 16 N -0.83 -45.17 10.96 21.83 0.24 -44.93 16 17 Si 0.98 40.71 29.60 68.60 2.03 42.74 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 C -0.17 -9.06 8.26 22.47 0.19 -8.88 16 22 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.05 1.97 8.08 -2.38 -0.02 1.95 16 24 H 0.07 2.33 8.08 -2.39 -0.02 2.31 16 25 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.12 4.78 6.31 -2.91 -0.02 4.76 16 27 H 0.05 1.73 7.67 -2.39 -0.02 1.71 16 28 H 0.05 1.86 7.40 -2.39 -0.02 1.84 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.08 2.08 7.92 -2.39 -0.02 2.06 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.09 1.72 8.10 -2.39 -0.02 1.71 16 36 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 37 H 0.11 6.11 6.16 -2.91 -0.02 6.09 16 Total: -1.00 -64.70 304.80 5.36 -59.34 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.04 Total: 25.39 kcal Atomic # 6 Polarization: -68.34 SS G_CDS: 2.89 Total: -65.45 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.24 Total: -44.93 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.84 Total: -17.09 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -64.70 5.36 -59.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.087 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds