Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38816 * 119.70305 * 2 1 4 4 C 1.36490 * 120.53742 * 179.72095 * 3 2 1 5 5 C 1.40724 * 119.92548 * 0.52479 * 4 3 2 6 6 C 1.41158 * 120.28571 * 179.72701 * 5 4 3 7 7 H 1.08001 * 119.99847 * 154.55391 * 6 5 4 8 8 C 1.39936 * 120.00122 * 334.54448 * 6 5 4 9 9 N 1.30867 * 120.00217 * 343.08728 * 8 6 5 10 10 Si 1.86797 * 119.99817 * 163.08044 * 8 6 5 11 11 H 1.48497 * 109.47131 * 60.00626 * 10 8 6 12 12 H 1.48499 * 109.47310 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47528 * 300.00258 * 10 8 6 14 14 C 1.41312 * 119.42188 * 359.74787 * 5 4 3 15 15 O 1.35650 * 120.26176 * 180.02562 * 14 5 4 16 16 C 1.42902 * 116.99934 * 269.97555 * 15 14 5 17 17 C 1.52998 * 109.47006 * 180.02562 * 16 15 14 18 18 C 1.53005 * 117.49645 * 243.62468 * 17 16 15 19 19 C 1.52995 * 117.49972 * 175.00060 * 17 16 15 20 20 C 1.38309 * 119.70142 * 180.26602 * 2 1 3 21 21 C 1.50698 * 119.97663 * 0.02562 * 20 2 1 22 22 H 1.09005 * 109.47031 * 269.73313 * 1 2 3 23 23 H 1.09000 * 109.47251 * 149.73358 * 1 2 3 24 24 H 1.09003 * 109.47277 * 29.72936 * 1 2 3 25 25 H 1.08004 * 119.73227 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.03431 * 180.27357 * 4 3 2 27 27 H 0.96995 * 120.00321 * 179.97438 * 9 8 6 28 28 H 1.09003 * 109.46839 * 300.00121 * 16 15 14 29 29 H 1.08992 * 109.47117 * 60.00058 * 16 15 14 30 30 H 1.09001 * 115.54932 * 29.33002 * 17 16 15 31 31 H 1.08996 * 117.49724 * 359.97438 * 18 17 16 32 32 H 1.09002 * 117.49942 * 145.02344 * 18 17 16 33 33 H 1.08998 * 117.50252 * 214.97588 * 19 17 16 34 34 H 1.09002 * 117.49993 * 0.02562 * 19 17 16 35 35 H 1.08995 * 109.47104 * 89.99664 * 21 20 2 36 36 H 1.08997 * 109.47179 * 209.99662 * 21 20 2 37 37 H 1.09000 * 109.46658 * 329.99266 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2058 0.0000 4 6 3.5596 1.2256 0.0057 5 6 4.2794 0.0164 0.0005 6 6 5.6909 0.0281 0.0006 7 1 6.2379 -0.8137 0.3988 8 6 6.3815 1.1303 -0.5156 9 7 5.7626 1.9881 -1.2862 10 14 8.1868 1.3775 -0.1044 11 1 8.9679 0.2087 -0.5828 12 1 8.6818 2.6097 -0.7691 13 1 8.3460 1.5108 1.3661 14 6 3.5767 -1.2096 -0.0052 15 8 4.2534 -2.3853 -0.0098 16 6 4.5774 -2.9424 -1.2852 17 6 5.3334 -4.2582 -1.0898 18 6 6.7762 -4.3256 -1.5945 19 6 5.6689 -5.0726 -2.3407 20 6 2.1923 -1.2014 -0.0056 21 6 1.4315 -2.5022 -0.0122 22 1 -0.3633 -0.0048 1.0277 23 1 -0.3634 -0.8876 -0.5180 24 1 -0.3634 0.8924 -0.5096 25 1 1.6457 2.1357 -0.0004 26 1 4.0865 2.1684 0.0101 27 1 6.2411 2.7523 -1.6436 28 1 3.6601 -3.1302 -1.8433 29 1 5.2028 -2.2424 -1.8391 30 1 5.0916 -4.8087 -0.1806 31 1 7.1866 -3.4327 -2.0661 32 1 7.4840 -4.9205 -1.0174 33 1 5.6483 -6.1590 -2.2545 34 1 5.3514 -4.6709 -3.3030 35 1 1.2484 -2.8108 -1.0414 36 1 2.0161 -3.2676 0.4981 37 1 0.4797 -2.3689 0.5020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215790417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -25.870803 kcal Electronic energy + Delta-G solvation = -17892.445051 eV Core-core repulsion = 15213.350589 eV Total energy + Delta-G solvation = -2679.094462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52782 -38.66251 -37.14929 -36.08111 -33.26417 -31.78446 -29.30855 -28.50806 -26.85188 -25.40977 -23.26754 -22.11093 -21.67482 -21.54746 -18.86653 -17.92284 -17.41558 -16.67521 -16.51913 -15.67493 -15.46264 -14.84190 -14.72538 -14.36438 -14.22730 -13.90992 -13.60472 -13.42678 -13.25658 -12.82381 -12.70718 -12.60875 -12.40791 -12.31038 -12.07633 -11.88259 -11.78939 -11.46670 -11.30351 -11.03787 -10.99824 -10.23978 -9.12884 -9.02356 -8.64382 -6.30284 0.84342 0.99074 1.33124 1.43955 1.49190 2.17249 2.62099 2.79825 3.13485 3.68089 3.96826 3.98075 4.21746 4.33076 4.40319 4.42320 4.64569 4.67890 4.71660 4.74665 4.78539 4.81462 4.87305 4.98702 5.02116 5.12553 5.14183 5.21722 5.22945 5.24572 5.38919 5.47653 5.65792 5.89900 6.07448 6.20636 6.37157 6.54189 6.82714 6.89498 7.33473 8.29198 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.011557 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.459853 B = 2422.200128 C = 4378.570624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.204 4.204 3 C -0.108 4.108 4 C -0.181 4.181 5 C 0.065 3.935 6 C -0.478 4.478 7 H 0.067 0.933 8 C 0.037 3.963 9 N -0.823 5.823 10 Si 0.975 3.025 11 H -0.261 1.261 12 H -0.264 1.264 13 H -0.262 1.262 14 C -0.048 4.048 15 O -0.331 6.331 16 C 0.101 3.899 17 C -0.165 4.165 18 C -0.183 4.183 19 C -0.149 4.149 20 C -0.085 4.085 21 C -0.094 4.094 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.288 0.712 28 H 0.042 0.958 29 H 0.020 0.980 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -7.625 -1.434 8.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.205 4.205 3 C -0.126 4.126 4 C -0.201 4.201 5 C 0.063 3.937 6 C -0.507 4.507 7 H 0.086 0.914 8 C -0.178 4.178 9 N -0.449 5.449 10 Si 0.796 3.204 11 H -0.185 1.185 12 H -0.188 1.188 13 H -0.186 1.186 14 C -0.093 4.093 15 O -0.248 6.248 16 C 0.026 3.974 17 C -0.183 4.183 18 C -0.220 4.220 19 C -0.186 4.186 20 C -0.086 4.086 21 C -0.151 4.151 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.135 -7.516 -1.441 7.946 hybrid contribution 1.001 0.790 -0.138 1.282 sum -1.135 -6.726 -1.579 7.002 Atomic orbital electron populations 1.20492 0.89938 1.02038 1.01458 1.19481 0.96510 0.91561 1.12996 1.20640 0.93974 0.97216 1.00805 1.20947 0.93669 0.97701 1.07783 1.18211 0.94325 0.91357 0.89855 1.19526 0.91906 1.02989 1.36319 0.91434 1.26712 1.05198 0.93988 0.91925 1.69876 1.40519 1.11646 1.22819 0.85353 0.76458 0.78840 0.79733 1.18505 1.18759 1.18614 1.18693 0.89608 0.84878 1.16085 1.85830 1.75414 1.35328 1.28277 1.22027 0.96955 0.92619 0.85773 1.22079 0.98793 0.96992 1.00431 1.23101 0.91679 1.02882 1.04329 1.23060 1.01177 0.99569 0.94798 1.19957 0.92268 0.96078 1.00252 1.20584 0.99415 0.93410 1.01671 0.91940 0.91480 0.92156 0.87135 0.87959 0.90092 0.93946 0.96154 0.86950 0.90244 0.87082 0.85813 0.88613 0.91674 0.92484 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.66 9.17 71.24 0.65 -2.00 16 2 C -0.20 -8.85 5.90 -19.71 -0.12 -8.97 16 3 C -0.11 -5.12 9.61 22.00 0.21 -4.91 16 4 C -0.18 -9.87 8.63 22.47 0.19 -9.67 16 5 C 0.07 3.69 5.58 -21.20 -0.12 3.57 16 6 C -0.48 -27.04 8.71 23.40 0.20 -26.83 16 7 H 0.07 3.87 7.66 -2.91 -0.02 3.85 16 8 C 0.04 1.91 5.15 85.25 0.44 2.35 16 9 N -0.82 -43.88 10.97 21.83 0.24 -43.64 16 10 Si 0.98 39.75 29.59 68.60 2.03 41.78 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 12 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 13 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 14 C -0.05 -2.50 5.73 23.08 0.13 -2.37 16 15 O -0.33 -16.11 8.41 -89.65 -0.75 -16.87 16 16 C 0.10 4.20 6.34 71.98 0.46 4.66 16 17 C -0.16 -5.36 6.06 -10.79 -0.07 -5.42 16 18 C -0.18 -5.28 10.18 30.60 0.31 -4.97 16 19 C -0.15 -3.66 10.25 30.59 0.31 -3.35 16 20 C -0.09 -3.85 5.89 -19.80 -0.12 -3.97 16 21 C -0.09 -3.33 8.96 71.24 0.64 -2.70 16 22 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.07 1.91 6.67 -2.39 -0.02 1.90 16 24 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 25 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 26 H 0.10 5.78 6.19 -2.91 -0.02 5.76 16 27 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.02 0.95 7.88 -2.39 -0.02 0.93 16 30 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.08 2.55 8.03 -2.39 -0.02 2.53 16 32 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 2.04 7.53 -2.39 -0.02 2.02 16 37 H 0.08 2.39 6.68 -2.39 -0.02 2.38 16 Total: -1.00 -62.57 308.51 5.70 -56.88 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 1.04 Total: 26.44 kcal Atomic # 6 Polarization: -67.73 SS G_CDS: 3.14 Total: -64.59 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.24 Total: -43.64 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.75 Total: -16.87 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -62.57 5.70 -56.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.005 kcal (2) G-P(sol) polarization free energy of solvation -62.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds