Wall clock time and date at job start Mon Mar 30 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36517 * 120.03744 * 2 1 4 4 C 1.38774 * 120.53783 * 179.97438 * 3 2 1 5 5 C 1.38346 * 120.59184 * 0.02562 * 4 3 2 6 6 C 1.38402 * 120.05240 * 359.97438 * 5 4 3 7 7 O 1.35642 * 120.26866 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99945 * 5.21032 * 7 6 5 9 9 C 1.54890 * 110.75426 * 156.86042 * 8 7 6 10 10 C 1.54272 * 104.31231 * 156.32410 * 9 8 7 11 11 C 1.53870 * 106.59503 * 336.32341 * 10 9 8 12 12 C 1.54263 * 106.60406 * 359.97438 * 11 10 9 13 13 C 1.40691 * 120.03134 * 180.27265 * 2 1 3 14 14 C 1.41158 * 120.29007 * 0.02656 * 13 2 1 15 15 H 1.07996 * 119.99948 * 37.51136 * 14 13 2 16 16 C 1.39930 * 120.00050 * 217.50339 * 14 13 2 17 17 N 1.30860 * 120.00278 * 214.09088 * 16 14 13 18 18 Si 1.86809 * 119.99924 * 34.08836 * 16 14 13 19 19 H 1.48504 * 109.46859 * 90.68260 * 18 16 14 20 20 H 1.48496 * 109.47088 * 210.68214 * 18 16 14 21 21 H 1.48502 * 109.46772 * 330.68447 * 18 16 14 22 22 H 1.08994 * 109.46853 * 95.28591 * 1 2 3 23 23 H 1.08991 * 109.47521 * 215.29347 * 1 2 3 24 24 H 1.08998 * 109.46501 * 335.29412 * 1 2 3 25 25 H 1.08003 * 119.73773 * 359.95390 * 3 2 1 26 26 H 1.08004 * 119.70378 * 179.97438 * 4 3 2 27 27 H 1.08005 * 119.97790 * 179.97438 * 5 4 3 28 28 H 1.08994 * 110.81596 * 33.52509 * 8 7 6 29 29 H 1.08997 * 110.48915 * 37.57868 * 9 8 7 30 30 H 1.09004 * 110.48310 * 275.06599 * 9 8 7 31 31 H 1.08997 * 110.02930 * 95.60480 * 10 9 8 32 32 H 1.08992 * 110.02978 * 217.03658 * 10 9 8 33 33 H 1.09000 * 110.03439 * 119.28593 * 11 10 9 34 34 H 1.09005 * 110.02947 * 240.71669 * 11 10 9 35 35 H 1.09000 * 110.49107 * 142.29134 * 12 11 10 36 36 H 1.09007 * 110.48632 * 264.80618 * 12 11 10 37 37 H 0.97004 * 120.00330 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1818 0.0000 4 6 3.5781 1.1939 0.0005 5 6 4.2926 0.0092 0.0005 6 6 3.6246 -1.2029 0.0006 7 8 4.3207 -2.3671 0.0000 8 6 5.7420 -2.2732 0.1151 9 6 6.3359 -3.5914 0.6709 10 6 7.7985 -3.5875 0.1801 11 6 7.8423 -2.6819 -1.0632 12 6 6.4050 -2.1676 -1.2849 13 6 2.2112 -1.2180 -0.0058 14 6 1.5123 -2.4444 -0.0122 15 1 0.6006 -2.5434 -0.5826 16 6 2.0008 -3.5320 0.7203 17 7 1.8397 -4.7499 0.2696 18 14 2.8831 -3.2452 2.3418 19 1 1.8986 -3.2759 3.4532 20 1 3.8967 -4.3105 2.5489 21 1 3.5552 -1.9213 2.3122 22 1 -0.3633 -0.0947 -1.0232 23 1 -0.3634 -0.8387 0.5937 24 1 -0.3632 0.9336 0.4295 25 1 1.6468 2.1150 -0.0008 26 1 4.1051 2.1367 0.0001 27 1 5.3724 0.0302 0.0005 28 1 6.0248 -1.4276 0.7419 29 1 5.8005 -4.4509 0.2678 30 1 6.2992 -3.5967 1.7604 31 1 8.4516 -3.1883 0.9560 32 1 8.1063 -4.5992 -0.0838 33 1 8.5169 -1.8433 -0.8907 34 1 8.1716 -3.2543 -1.9305 35 1 6.4184 -1.1313 -1.6226 36 1 5.8818 -2.7961 -2.0057 37 1 2.1780 -5.5038 0.7776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215790549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:03 Heat of formation + Delta-G solvation = -31.780849 kcal Electronic energy + Delta-G solvation = -18453.150538 eV Core-core repulsion = 15773.799797 eV Total energy + Delta-G solvation = -2679.350741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.30432 -37.43290 -35.44102 -33.46590 -31.27620 -29.73389 -28.50291 -27.37410 -26.11119 -24.47768 -21.24033 -20.78770 -20.07638 -19.11257 -17.49759 -16.76138 -15.51822 -15.20316 -14.93900 -14.21116 -14.07893 -13.47294 -13.12147 -13.00118 -12.67637 -12.35710 -12.08356 -11.84934 -11.61491 -11.21123 -11.10914 -10.99803 -10.95476 -10.76662 -10.62006 -10.27844 -10.25995 -10.12105 -9.94689 -9.56390 -9.31236 -8.81775 -7.40928 -6.98184 -6.82390 -4.19058 2.65849 2.80257 3.23665 3.27546 3.41386 4.18843 4.30404 4.61159 4.81593 4.86146 5.11565 5.39243 5.52984 5.64351 5.73137 5.80118 5.83269 6.00945 6.04416 6.09220 6.10330 6.19982 6.27491 6.40092 6.46971 6.49834 6.55624 6.66850 6.68518 6.87019 7.03698 7.17518 7.35899 7.69887 7.73773 7.94525 8.11884 8.46583 8.54520 8.88696 9.07350 10.17305 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.010911 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.052314 B = 2565.581887 C = 3456.582606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.169 4.169 3 C -0.111 4.111 4 C -0.213 4.213 5 C -0.177 4.177 6 C 0.031 3.969 7 O -0.287 6.287 8 C 0.077 3.923 9 C -0.123 4.123 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.144 4.144 13 C 0.080 3.920 14 C -0.466 4.466 15 H 0.090 0.910 16 C 0.119 3.881 17 N -0.788 5.788 18 Si 0.899 3.101 19 H -0.286 1.286 20 H -0.280 1.280 21 H -0.245 1.245 22 H 0.045 0.955 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.280 2.449 0.870 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.170 4.170 3 C -0.129 4.129 4 C -0.232 4.232 5 C -0.196 4.196 6 C -0.013 4.013 7 O -0.201 6.201 8 C 0.019 3.981 9 C -0.161 4.161 10 C -0.157 4.157 11 C -0.159 4.159 12 C -0.182 4.182 13 C 0.077 3.923 14 C -0.493 4.493 15 H 0.108 0.892 16 C -0.103 4.103 17 N -0.411 5.411 18 Si 0.725 3.275 19 H -0.214 1.214 20 H -0.206 1.206 21 H -0.169 1.169 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.201 1.952 0.826 8.470 hybrid contribution 0.676 0.192 0.659 0.963 sum 8.877 2.144 1.484 9.252 Atomic orbital electron populations 1.20387 0.92798 1.00415 1.00386 1.19351 0.94721 0.92083 1.10835 1.20176 0.93792 0.96185 1.02757 1.20106 0.93746 0.95620 1.13765 1.20702 0.97719 0.92774 1.08403 1.19091 0.91739 0.83464 1.07016 1.86035 1.16377 1.29040 1.88688 1.23253 0.81315 0.97704 0.95788 1.22417 0.95131 0.98164 1.00393 1.22046 0.96199 0.99973 0.97501 1.22036 0.96944 0.98984 0.97921 1.22902 0.95266 1.01665 0.98368 1.16951 0.87756 0.93353 0.94220 1.19028 1.09935 0.92689 1.27647 0.89207 1.25870 0.91580 0.93900 0.98917 1.69891 1.35407 1.00396 1.35435 0.86367 0.79308 0.80813 0.81047 1.21356 1.20556 1.16911 0.93619 0.91752 0.94179 0.89089 0.89114 0.88401 0.91176 0.90235 0.91606 0.91914 0.91580 0.92024 0.91789 0.91492 0.90427 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.33 36.01 0.34 -1.38 16 2 C -0.17 -4.01 5.90 -104.31 -0.62 -4.62 16 3 C -0.11 -2.43 9.59 -40.00 -0.38 -2.82 16 4 C -0.21 -4.62 10.04 -39.34 -0.39 -5.02 16 5 C -0.18 -3.98 8.91 -39.48 -0.35 -4.33 16 6 C 0.03 0.77 4.79 -38.34 -0.18 0.58 16 7 O -0.29 -6.81 5.82 -18.63 -0.11 -6.92 16 8 C 0.08 1.46 2.69 -24.53 -0.07 1.39 16 9 C -0.12 -2.07 6.54 -25.07 -0.16 -2.24 16 10 C -0.12 -1.56 6.80 -25.61 -0.17 -1.73 16 11 C -0.12 -1.57 6.80 -25.62 -0.17 -1.74 16 12 C -0.14 -2.37 6.40 -24.87 -0.16 -2.52 16 13 C 0.08 2.09 4.79 -106.68 -0.51 1.58 16 14 C -0.47 -12.82 8.10 -37.84 -0.31 -13.12 16 15 H 0.09 2.56 7.66 -52.49 -0.40 2.16 16 16 C 0.12 3.20 4.46 -17.33 -0.08 3.12 16 17 N -0.79 -21.35 13.93 55.55 0.77 -20.58 16 18 Si 0.90 21.66 25.71 -169.99 -4.37 17.29 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.25 -6.11 5.87 56.52 0.33 -5.78 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.06 1.37 7.27 -51.93 -0.38 0.99 16 24 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 25 H 0.09 1.74 8.05 -52.48 -0.42 1.32 16 26 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 27 H 0.10 1.96 5.57 -52.48 -0.29 1.66 16 28 H 0.07 1.30 6.29 -51.93 -0.33 0.98 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.07 7.71 -51.93 -0.40 0.67 16 36 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 37 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -28.30 292.76 -8.17 -36.47 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.65 Total: 2.17 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: -3.23 Total: -32.84 kcal Atomic # 7 Polarization: -21.35 SS G_CDS: 0.77 Total: -20.58 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.11 Total: -6.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.37 Total: 17.29 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.30 -8.17 -36.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.685 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds