Wall clock time and date at job start Mon Mar 30 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36517 * 120.03744 * 2 1 4 4 C 1.38774 * 120.53783 * 179.97438 * 3 2 1 5 5 C 1.38346 * 120.59184 * 0.02562 * 4 3 2 6 6 C 1.38402 * 120.05240 * 359.97438 * 5 4 3 7 7 O 1.35642 * 120.26866 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99945 * 5.21032 * 7 6 5 9 9 C 1.54890 * 110.75426 * 156.86042 * 8 7 6 10 10 C 1.54272 * 104.31231 * 156.32410 * 9 8 7 11 11 C 1.53870 * 106.59503 * 336.32341 * 10 9 8 12 12 C 1.54263 * 106.60406 * 359.97438 * 11 10 9 13 13 C 1.40691 * 120.03134 * 180.27265 * 2 1 3 14 14 C 1.41158 * 120.29007 * 0.02656 * 13 2 1 15 15 H 1.07996 * 119.99948 * 37.51136 * 14 13 2 16 16 C 1.39930 * 120.00050 * 217.50339 * 14 13 2 17 17 N 1.30860 * 120.00278 * 214.09088 * 16 14 13 18 18 Si 1.86809 * 119.99924 * 34.08836 * 16 14 13 19 19 H 1.48504 * 109.46859 * 90.68260 * 18 16 14 20 20 H 1.48496 * 109.47088 * 210.68214 * 18 16 14 21 21 H 1.48502 * 109.46772 * 330.68447 * 18 16 14 22 22 H 1.08994 * 109.46853 * 95.28591 * 1 2 3 23 23 H 1.08991 * 109.47521 * 215.29347 * 1 2 3 24 24 H 1.08998 * 109.46501 * 335.29412 * 1 2 3 25 25 H 1.08003 * 119.73773 * 359.95390 * 3 2 1 26 26 H 1.08004 * 119.70378 * 179.97438 * 4 3 2 27 27 H 1.08005 * 119.97790 * 179.97438 * 5 4 3 28 28 H 1.08994 * 110.81596 * 33.52509 * 8 7 6 29 29 H 1.08997 * 110.48915 * 37.57868 * 9 8 7 30 30 H 1.09004 * 110.48310 * 275.06599 * 9 8 7 31 31 H 1.08997 * 110.02930 * 95.60480 * 10 9 8 32 32 H 1.08992 * 110.02978 * 217.03658 * 10 9 8 33 33 H 1.09000 * 110.03439 * 119.28593 * 11 10 9 34 34 H 1.09005 * 110.02947 * 240.71669 * 11 10 9 35 35 H 1.09000 * 110.49107 * 142.29134 * 12 11 10 36 36 H 1.09007 * 110.48632 * 264.80618 * 12 11 10 37 37 H 0.97004 * 120.00330 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1904 1.1818 0.0000 4 6 3.5781 1.1939 0.0005 5 6 4.2926 0.0092 0.0005 6 6 3.6246 -1.2029 0.0006 7 8 4.3207 -2.3671 0.0000 8 6 5.7420 -2.2732 0.1151 9 6 6.3359 -3.5914 0.6709 10 6 7.7985 -3.5875 0.1801 11 6 7.8423 -2.6819 -1.0632 12 6 6.4050 -2.1676 -1.2849 13 6 2.2112 -1.2180 -0.0058 14 6 1.5123 -2.4444 -0.0122 15 1 0.6006 -2.5434 -0.5826 16 6 2.0008 -3.5320 0.7203 17 7 1.8397 -4.7499 0.2696 18 14 2.8831 -3.2452 2.3418 19 1 1.8986 -3.2759 3.4532 20 1 3.8967 -4.3105 2.5489 21 1 3.5552 -1.9213 2.3122 22 1 -0.3633 -0.0947 -1.0232 23 1 -0.3634 -0.8387 0.5937 24 1 -0.3632 0.9336 0.4295 25 1 1.6468 2.1150 -0.0008 26 1 4.1051 2.1367 0.0001 27 1 5.3724 0.0302 0.0005 28 1 6.0248 -1.4276 0.7419 29 1 5.8005 -4.4509 0.2678 30 1 6.2992 -3.5967 1.7604 31 1 8.4516 -3.1883 0.9560 32 1 8.1063 -4.5992 -0.0838 33 1 8.5169 -1.8433 -0.8907 34 1 8.1716 -3.2543 -1.9305 35 1 6.4184 -1.1313 -1.6226 36 1 5.8818 -2.7961 -2.0057 37 1 2.1780 -5.5038 0.7776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215790549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:03 Heat of formation + Delta-G solvation = -46.332336 kcal Electronic energy + Delta-G solvation = -18453.781538 eV Core-core repulsion = 15773.799797 eV Total energy + Delta-G solvation = -2679.981740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96312 -38.98188 -36.96783 -35.39742 -33.07078 -31.51093 -29.74142 -28.71618 -27.86307 -26.34045 -22.91366 -22.44576 -21.22228 -20.74928 -19.38106 -18.42534 -17.17062 -16.84086 -16.38358 -15.96127 -15.65644 -15.07820 -14.76470 -14.63978 -14.28509 -14.01712 -13.49699 -13.44573 -13.36825 -12.96863 -12.85501 -12.53639 -12.31312 -12.17251 -12.07655 -11.93944 -11.80349 -11.70006 -11.31296 -11.22682 -11.03565 -10.76731 -9.26149 -8.85465 -8.72936 -6.20116 0.80545 0.97856 1.28715 1.37777 1.45707 2.26853 2.62820 2.78007 3.46383 3.60884 3.66986 3.92517 4.18376 4.31829 4.42479 4.44361 4.50460 4.55970 4.61939 4.72299 4.77317 4.83806 4.92499 5.01619 5.02122 5.07520 5.12376 5.20644 5.22355 5.25716 5.39240 5.41291 5.60482 5.85166 5.92248 6.09514 6.27820 6.50565 6.70847 6.92896 7.24224 8.25676 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.010911 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.052314 B = 2565.581887 C = 3456.582606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.175 4.175 3 C -0.122 4.122 4 C -0.193 4.193 5 C -0.188 4.188 6 C 0.023 3.977 7 O -0.313 6.313 8 C 0.060 3.940 9 C -0.127 4.127 10 C -0.111 4.111 11 C -0.113 4.113 12 C -0.141 4.141 13 C 0.044 3.956 14 C -0.501 4.501 15 H 0.057 0.943 16 C 0.092 3.908 17 N -0.831 5.831 18 Si 0.943 3.057 19 H -0.284 1.284 20 H -0.266 1.266 21 H -0.257 1.257 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.772 4.788 1.390 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.176 4.176 3 C -0.140 4.140 4 C -0.212 4.212 5 C -0.206 4.206 6 C -0.022 4.022 7 O -0.228 6.228 8 C 0.004 3.996 9 C -0.164 4.164 10 C -0.149 4.149 11 C -0.150 4.150 12 C -0.179 4.179 13 C 0.042 3.958 14 C -0.529 4.529 15 H 0.075 0.925 16 C -0.125 4.125 17 N -0.456 5.456 18 Si 0.768 3.232 19 H -0.211 1.211 20 H -0.191 1.191 21 H -0.181 1.181 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.701 4.293 1.345 11.608 hybrid contribution -0.054 -0.287 0.425 0.515 sum 10.646 4.007 1.770 11.512 Atomic orbital electron populations 1.20400 0.91235 1.01457 1.00681 1.19861 0.96359 0.92201 1.09179 1.20582 0.94369 0.96824 1.02275 1.20694 0.93974 0.96845 1.09709 1.21060 0.99272 0.92234 1.08077 1.19339 0.91668 0.84746 1.06399 1.86004 1.18936 1.29187 1.88675 1.23676 0.79226 0.99067 0.97659 1.22480 0.97486 0.96166 1.00300 1.22055 0.93521 1.01227 0.98052 1.22036 0.94650 0.99868 0.98492 1.22857 0.97203 1.01629 0.96219 1.17265 0.88974 0.93700 0.95887 1.18915 1.09892 0.94445 1.29697 0.92487 1.26325 0.92105 0.93554 1.00531 1.69912 1.37973 1.01036 1.36723 0.85707 0.78719 0.80274 0.78534 1.21124 1.19081 1.18111 0.93173 0.93406 0.90831 0.85554 0.85336 0.85838 0.90580 0.92536 0.91668 0.89645 0.90079 0.89742 0.90312 0.91170 0.92692 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.30 9.33 71.24 0.66 -2.64 16 2 C -0.17 -8.17 5.90 -19.66 -0.12 -8.29 16 3 C -0.12 -4.97 9.59 22.00 0.21 -4.76 16 4 C -0.19 -7.60 10.04 22.42 0.23 -7.38 16 5 C -0.19 -7.97 8.91 22.33 0.20 -7.77 16 6 C 0.02 1.13 4.79 23.08 0.11 1.24 16 7 O -0.31 -15.03 5.82 -89.56 -0.52 -15.56 16 8 C 0.06 2.23 2.69 32.02 0.09 2.31 16 9 C -0.13 -4.12 6.54 31.67 0.21 -3.92 16 10 C -0.11 -2.54 6.80 31.32 0.21 -2.33 16 11 C -0.11 -2.54 6.80 31.32 0.21 -2.33 16 12 C -0.14 -4.43 6.40 31.80 0.20 -4.22 16 13 C 0.04 2.36 4.79 -21.20 -0.10 2.25 16 14 C -0.50 -29.08 8.10 23.40 0.19 -28.89 16 15 H 0.06 3.53 7.66 -2.91 -0.02 3.51 16 16 C 0.09 5.19 4.46 85.25 0.38 5.57 16 17 N -0.83 -47.48 13.93 21.83 0.30 -47.17 16 18 Si 0.94 45.80 25.71 68.60 1.76 47.56 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.26 -12.77 5.87 99.48 0.58 -12.18 16 22 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 2.08 7.27 -2.39 -0.02 2.07 16 24 H 0.07 2.44 8.04 -2.39 -0.02 2.43 16 25 H 0.13 4.23 8.05 -2.91 -0.02 4.20 16 26 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 27 H 0.12 4.53 5.57 -2.91 -0.02 4.51 16 28 H 0.08 2.67 6.29 -2.39 -0.02 2.66 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.07 2.10 7.71 -2.39 -0.02 2.09 16 36 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 Total: -1.00 -63.75 292.76 5.15 -58.60 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.92 Total: 17.72 kcal Atomic # 6 Polarization: -63.84 SS G_CDS: 2.69 Total: -61.15 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.30 Total: -47.17 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.52 Total: -15.56 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.76 Total: 47.56 kcal Total: -63.75 5.15 -58.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.268 kcal (2) G-P(sol) polarization free energy of solvation -63.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds