Wall clock time and date at job start Mon Mar 30 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35635 * 116.99757 * 2 1 4 4 C 1.38112 * 120.39479 * 0.02562 * 3 2 1 5 5 C 1.39034 * 120.72976 * 179.66854 * 4 3 2 6 6 C 1.38391 * 120.16374 * 359.96104 * 5 4 3 7 7 C 1.37211 * 120.14083 * 0.47544 * 6 5 4 8 8 C 1.50694 * 119.70402 * 179.73894 * 7 6 5 9 9 C 1.40406 * 120.59634 * 359.71635 * 7 6 5 10 10 C 1.41159 * 120.42608 * 179.97438 * 9 7 6 11 11 H 1.07991 * 119.99674 * 38.42140 * 10 9 7 12 12 C 1.39928 * 119.99788 * 218.42862 * 10 9 7 13 13 N 1.30872 * 120.00587 * 19.91505 * 12 10 9 14 14 Si 1.86804 * 119.99825 * 199.91729 * 12 10 9 15 15 H 1.48498 * 109.47076 * 60.00016 * 14 12 10 16 16 H 1.48502 * 109.47188 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47180 * 299.99994 * 14 12 10 18 18 C 1.50721 * 122.44691 * 180.81216 * 6 5 4 19 19 C 1.52699 * 110.60071 * 341.84976 * 18 6 5 20 20 C 1.53316 * 108.38317 * 51.33411 * 19 18 6 21 21 C 1.50735 * 117.43924 * 179.61096 * 5 4 3 22 22 H 1.09000 * 109.47344 * 300.00117 * 1 2 3 23 23 H 1.08998 * 109.47171 * 60.00265 * 1 2 3 24 24 H 1.09005 * 109.47422 * 179.97438 * 1 2 3 25 25 H 1.07992 * 119.63881 * 359.93823 * 4 3 2 26 26 H 1.09001 * 109.47668 * 89.99639 * 8 7 6 27 27 H 1.09003 * 109.47345 * 209.99864 * 8 7 6 28 28 H 1.09003 * 109.47140 * 329.99520 * 8 7 6 29 29 H 0.96993 * 120.00139 * 179.97438 * 13 12 10 30 30 H 1.08999 * 109.24824 * 102.14499 * 18 6 5 31 31 H 1.09006 * 109.25002 * 221.60160 * 18 6 5 32 32 H 1.09002 * 109.68453 * 171.04939 * 19 18 6 33 33 H 1.08999 * 109.68806 * 291.60757 * 19 18 6 34 34 H 1.08999 * 109.68220 * 49.67036 * 20 19 18 35 35 H 1.09008 * 109.67845 * 170.21019 * 20 19 18 36 36 H 1.09004 * 109.25308 * 282.54360 * 21 5 4 37 37 H 1.09001 * 109.24984 * 41.95981 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.3004 2.3720 0.0005 5 6 1.9243 3.6145 0.0075 6 6 3.3056 3.6990 0.0147 7 6 4.0658 2.5567 0.0053 8 6 5.5692 2.6603 0.0074 9 6 3.4556 1.2922 -0.0058 10 6 4.2412 0.1195 -0.0160 11 1 5.1504 0.0736 0.5649 12 6 3.8418 -0.9835 -0.7789 13 7 2.9941 -0.8258 -1.7634 14 14 4.5186 -2.6810 -0.3921 15 1 4.1529 -3.0548 0.9978 16 1 3.9432 -3.6707 -1.3380 17 1 5.9972 -2.6672 -0.5281 18 6 4.0350 5.0177 0.0404 19 6 3.1083 6.1527 -0.3893 20 6 1.8233 6.0691 0.4428 21 6 1.0406 4.8355 -0.0015 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2220 2.3160 -0.0001 26 1 5.9310 2.6763 1.0355 27 1 5.9933 1.8019 -0.5137 28 1 5.8709 3.5776 -0.4983 29 1 2.7176 -1.5903 -2.2925 30 1 4.3941 5.2101 1.0514 31 1 4.8852 4.9715 -0.6402 32 1 3.5967 7.1114 -0.2150 33 1 2.8678 6.0497 -1.4474 34 1 2.0754 5.9829 1.4998 35 1 1.2219 6.9636 0.2803 36 1 0.6594 4.9959 -1.0101 37 1 0.2028 4.6778 0.6777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215790617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:49 Heat of formation + Delta-G solvation = -38.971814 kcal Electronic energy + Delta-G solvation = -18392.914056 eV Core-core repulsion = 15713.251492 eV Total energy + Delta-G solvation = -2679.662564 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.10801 -37.27678 -34.92950 -32.98089 -32.15200 -29.37408 -28.52136 -26.24885 -25.93791 -24.65918 -22.17644 -21.45741 -19.28970 -18.79664 -17.03223 -15.83168 -15.39592 -14.93890 -14.34364 -14.23033 -13.70764 -13.30352 -13.27874 -12.88784 -12.44686 -12.33053 -11.99492 -11.62358 -11.50213 -11.26959 -11.22894 -10.90812 -10.72443 -10.62718 -10.44123 -10.33201 -10.24231 -9.99769 -9.53591 -9.24937 -9.12649 -8.72786 -7.12915 -6.62987 -6.47166 -4.12902 2.82494 3.00988 3.18739 3.21293 3.27868 4.12839 4.72621 4.79753 5.39232 5.39844 5.41701 5.52269 5.91794 6.00210 6.02078 6.04952 6.14114 6.15338 6.17747 6.25192 6.30177 6.39587 6.49028 6.52329 6.57891 6.68331 6.75723 6.80908 6.86789 7.02925 7.22640 7.35022 7.47542 7.82830 7.90775 8.10294 8.28097 8.61128 8.67596 9.06614 9.27171 10.44959 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.008395 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.355734 B = 3334.674678 C = 4137.100446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.278 6.278 3 C 0.080 3.920 4 C -0.197 4.197 5 C -0.159 4.159 6 C -0.079 4.079 7 C -0.168 4.168 8 C -0.086 4.086 9 C 0.105 3.895 10 C -0.471 4.471 11 H 0.077 0.923 12 C 0.091 3.909 13 N -0.775 5.775 14 Si 0.898 3.102 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.270 1.270 18 C -0.071 4.071 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.056 4.056 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.276 0.724 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 5.976 1.957 6.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.034 3.966 4 C -0.216 4.216 5 C -0.160 4.160 6 C -0.079 4.079 7 C -0.169 4.169 8 C -0.143 4.143 9 C 0.102 3.898 10 C -0.500 4.500 11 H 0.095 0.905 12 C -0.128 4.128 13 N -0.400 5.400 14 Si 0.724 3.276 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.195 1.195 18 C -0.107 4.107 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.093 4.093 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.100 5.651 1.754 6.278 hybrid contribution -0.254 -0.826 0.033 0.864 sum -2.354 4.825 1.787 5.659 Atomic orbital electron populations 1.22684 0.83053 1.01238 0.99305 1.86205 1.16856 1.27363 1.88638 1.19212 0.92382 0.82619 1.02391 1.20660 0.97322 0.92559 1.11092 1.18592 0.92278 0.92530 1.12610 1.18598 0.92188 0.93205 1.03917 1.19265 0.94309 0.91689 1.11667 1.20481 0.93471 1.00691 0.99642 1.16720 0.88252 0.92439 0.92353 1.19084 1.08368 0.96721 1.25839 0.90534 1.25603 0.93756 1.00059 0.93363 1.69736 1.25328 1.32517 1.12416 0.86545 0.79549 0.82182 0.79350 1.19161 1.20759 1.19501 1.20392 0.97390 0.92626 1.00330 1.21504 0.96248 0.97638 0.99905 1.21479 0.96614 0.97235 0.99806 1.20125 0.96698 0.92903 0.99609 0.94881 0.94408 0.90602 0.88918 0.94083 0.91856 0.93835 0.91353 0.92426 0.91736 0.92922 0.92195 0.92255 0.93022 0.93059 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.81 101.05 0.99 1.66 16 2 O -0.28 -7.02 7.43 -18.60 -0.14 -7.16 16 3 C 0.08 2.07 6.16 -38.45 -0.24 1.84 16 4 C -0.20 -4.64 8.60 -39.33 -0.34 -4.98 16 5 C -0.16 -3.51 5.77 -104.25 -0.60 -4.11 16 6 C -0.08 -1.75 5.71 -104.93 -0.60 -2.35 16 7 C -0.17 -4.07 5.91 -104.18 -0.62 -4.69 16 8 C -0.09 -1.82 8.93 36.00 0.32 -1.49 16 9 C 0.10 2.82 5.36 -106.79 -0.57 2.25 16 10 C -0.47 -12.71 7.60 -37.84 -0.29 -13.00 16 11 H 0.08 2.00 7.45 -52.49 -0.39 1.61 16 12 C 0.09 2.38 4.43 -17.33 -0.08 2.30 16 13 N -0.78 -20.86 11.24 55.55 0.62 -20.24 16 14 Si 0.90 19.72 29.60 -169.99 -5.03 14.69 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 C -0.07 -1.26 4.94 -28.03 -0.14 -1.40 16 19 C -0.12 -1.79 5.97 -26.72 -0.16 -1.95 16 20 C -0.11 -1.75 5.97 -26.72 -0.16 -1.91 16 21 C -0.06 -1.00 5.66 -28.02 -0.16 -1.16 16 22 H 0.03 0.59 7.67 -51.93 -0.40 0.19 16 23 H 0.04 0.72 7.67 -51.93 -0.40 0.32 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.09 1.98 6.27 -52.49 -0.33 1.65 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.39 6.96 -51.93 -0.36 1.03 16 28 H 0.04 0.81 5.86 -51.93 -0.30 0.50 16 29 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.12 6.18 -51.93 -0.32 0.80 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -28.72 289.94 -8.24 -36.96 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.44 Total: 0.37 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -2.63 Total: -28.99 kcal Atomic # 7 Polarization: -20.86 SS G_CDS: 0.62 Total: -20.24 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.14 Total: -7.16 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.72 -8.24 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.008 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds