Wall clock time and date at job start Mon Mar 30 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35635 * 116.99757 * 2 1 4 4 C 1.38112 * 120.39479 * 0.02562 * 3 2 1 5 5 C 1.39034 * 120.72976 * 179.66854 * 4 3 2 6 6 C 1.38391 * 120.16374 * 359.96104 * 5 4 3 7 7 C 1.37211 * 120.14083 * 0.47544 * 6 5 4 8 8 C 1.50694 * 119.70402 * 179.73894 * 7 6 5 9 9 C 1.40406 * 120.59634 * 359.71635 * 7 6 5 10 10 C 1.41159 * 120.42608 * 179.97438 * 9 7 6 11 11 H 1.07991 * 119.99674 * 38.42140 * 10 9 7 12 12 C 1.39928 * 119.99788 * 218.42862 * 10 9 7 13 13 N 1.30872 * 120.00587 * 19.91505 * 12 10 9 14 14 Si 1.86804 * 119.99825 * 199.91729 * 12 10 9 15 15 H 1.48498 * 109.47076 * 60.00016 * 14 12 10 16 16 H 1.48502 * 109.47188 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47180 * 299.99994 * 14 12 10 18 18 C 1.50721 * 122.44691 * 180.81216 * 6 5 4 19 19 C 1.52699 * 110.60071 * 341.84976 * 18 6 5 20 20 C 1.53316 * 108.38317 * 51.33411 * 19 18 6 21 21 C 1.50735 * 117.43924 * 179.61096 * 5 4 3 22 22 H 1.09000 * 109.47344 * 300.00117 * 1 2 3 23 23 H 1.08998 * 109.47171 * 60.00265 * 1 2 3 24 24 H 1.09005 * 109.47422 * 179.97438 * 1 2 3 25 25 H 1.07992 * 119.63881 * 359.93823 * 4 3 2 26 26 H 1.09001 * 109.47668 * 89.99639 * 8 7 6 27 27 H 1.09003 * 109.47345 * 209.99864 * 8 7 6 28 28 H 1.09003 * 109.47140 * 329.99520 * 8 7 6 29 29 H 0.96993 * 120.00139 * 179.97438 * 13 12 10 30 30 H 1.08999 * 109.24824 * 102.14499 * 18 6 5 31 31 H 1.09006 * 109.25002 * 221.60160 * 18 6 5 32 32 H 1.09002 * 109.68453 * 171.04939 * 19 18 6 33 33 H 1.08999 * 109.68806 * 291.60757 * 19 18 6 34 34 H 1.08999 * 109.68220 * 49.67036 * 20 19 18 35 35 H 1.09008 * 109.67845 * 170.21019 * 20 19 18 36 36 H 1.09004 * 109.25308 * 282.54360 * 21 5 4 37 37 H 1.09001 * 109.24984 * 41.95981 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.3004 2.3720 0.0005 5 6 1.9243 3.6145 0.0075 6 6 3.3056 3.6990 0.0147 7 6 4.0658 2.5567 0.0053 8 6 5.5692 2.6603 0.0074 9 6 3.4556 1.2922 -0.0058 10 6 4.2412 0.1195 -0.0160 11 1 5.1504 0.0736 0.5649 12 6 3.8418 -0.9835 -0.7789 13 7 2.9941 -0.8258 -1.7634 14 14 4.5186 -2.6810 -0.3921 15 1 4.1529 -3.0548 0.9978 16 1 3.9432 -3.6707 -1.3380 17 1 5.9972 -2.6672 -0.5281 18 6 4.0350 5.0177 0.0404 19 6 3.1083 6.1527 -0.3893 20 6 1.8233 6.0691 0.4428 21 6 1.0406 4.8355 -0.0015 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2220 2.3160 -0.0001 26 1 5.9310 2.6763 1.0355 27 1 5.9933 1.8019 -0.5137 28 1 5.8709 3.5776 -0.4983 29 1 2.7176 -1.5903 -2.2925 30 1 4.3941 5.2101 1.0514 31 1 4.8852 4.9715 -0.6402 32 1 3.5967 7.1114 -0.2150 33 1 2.8678 6.0497 -1.4474 34 1 2.0754 5.9829 1.4998 35 1 1.2219 6.9636 0.2803 36 1 0.6594 4.9959 -1.0101 37 1 0.2028 4.6778 0.6777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215790617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:48 Heat of formation + Delta-G solvation = -53.475891 kcal Electronic energy + Delta-G solvation = -18393.543000 eV Core-core repulsion = 15713.251492 eV Total energy + Delta-G solvation = -2680.291508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82159 -38.93520 -36.58814 -34.76749 -33.80754 -31.07734 -30.07746 -27.86926 -27.69749 -26.39056 -23.70611 -23.02037 -21.03627 -20.35872 -18.88699 -17.57092 -17.05969 -16.72540 -16.05939 -15.79242 -15.23001 -14.91478 -14.64030 -14.50376 -14.14622 -14.00147 -13.55094 -13.15551 -13.05279 -12.97899 -12.93659 -12.66725 -12.36625 -12.22103 -12.12667 -11.93058 -11.59852 -11.51797 -11.13287 -10.90510 -10.79639 -10.55097 -8.98097 -8.50040 -8.31153 -6.09730 0.99083 1.19304 1.39630 1.48245 1.52172 2.31240 2.88352 3.08175 3.65145 4.07189 4.10045 4.17016 4.40003 4.42774 4.48521 4.55885 4.65127 4.70513 4.72607 4.83955 4.86566 4.94543 5.02695 5.07116 5.13735 5.17919 5.26560 5.30693 5.35707 5.40642 5.57027 5.58164 5.73228 5.98453 6.11146 6.26856 6.48530 6.72113 6.83578 7.13199 7.44050 8.57190 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.008395 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.355734 B = 3334.674678 C = 4137.100446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.307 6.307 3 C 0.056 3.944 4 C -0.212 4.212 5 C -0.156 4.156 6 C -0.095 4.095 7 C -0.183 4.183 8 C -0.080 4.080 9 C 0.059 3.941 10 C -0.504 4.504 11 H 0.069 0.931 12 C 0.053 3.947 13 N -0.812 5.812 14 Si 0.962 3.038 15 H -0.270 1.270 16 H -0.273 1.273 17 H -0.262 1.262 18 C -0.069 4.069 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.058 4.058 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.278 0.722 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 7.948 2.357 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.220 6.220 3 C 0.010 3.990 4 C -0.231 4.231 5 C -0.158 4.158 6 C -0.095 4.095 7 C -0.184 4.184 8 C -0.136 4.136 9 C 0.057 3.943 10 C -0.534 4.534 11 H 0.087 0.913 12 C -0.162 4.162 13 N -0.438 5.438 14 Si 0.784 3.216 15 H -0.195 1.195 16 H -0.198 1.198 17 H -0.187 1.187 18 C -0.106 4.106 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.095 4.095 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.457 7.638 2.157 8.308 hybrid contribution -0.232 -1.278 -0.058 1.300 sum -2.689 6.360 2.099 7.217 Atomic orbital electron populations 1.22916 0.80715 1.03061 0.99984 1.86134 1.19442 1.27597 1.88790 1.19486 0.92683 0.83615 1.03179 1.20998 0.98268 0.92660 1.11139 1.19265 0.93140 0.93804 1.09545 1.19137 0.92642 0.94741 1.02955 1.19816 0.96149 0.91827 1.10639 1.20452 0.91664 1.01091 1.00425 1.17199 0.89302 0.93599 0.94217 1.19205 1.08849 0.98192 1.27136 0.91339 1.26272 0.94018 1.03129 0.92795 1.69801 1.27196 1.33305 1.13463 0.85580 0.79211 0.77965 0.78803 1.19511 1.19814 1.18691 1.20439 0.97680 0.91213 1.01284 1.21514 0.95990 0.97999 0.99472 1.21485 0.96591 0.97039 0.99605 1.20219 0.96575 0.92200 1.00539 0.93364 0.94315 0.88331 0.87240 0.92901 0.93708 0.91270 0.91238 0.91252 0.91252 0.89624 0.92762 0.92265 0.89807 0.92305 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 9.81 113.37 1.11 2.25 16 2 O -0.31 -15.88 7.43 -89.48 -0.66 -16.55 16 3 C 0.06 2.99 6.16 23.00 0.14 3.14 16 4 C -0.21 -9.96 8.60 22.43 0.19 -9.77 16 5 C -0.16 -6.72 5.77 -19.63 -0.11 -6.83 16 6 C -0.09 -4.10 5.71 -20.06 -0.11 -4.22 16 7 C -0.18 -8.99 5.91 -19.58 -0.12 -9.10 16 8 C -0.08 -3.36 8.93 71.23 0.64 -2.73 16 9 C 0.06 3.29 5.36 -21.27 -0.11 3.18 16 10 C -0.50 -28.40 7.60 23.40 0.18 -28.23 16 11 H 0.07 3.77 7.45 -2.92 -0.02 3.75 16 12 C 0.05 2.86 4.43 85.25 0.38 3.24 16 13 N -0.81 -45.22 11.24 21.83 0.25 -44.98 16 14 Si 0.96 41.66 29.60 68.60 2.03 43.69 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 18 C -0.07 -2.29 4.94 29.75 0.15 -2.15 16 19 C -0.11 -3.02 5.97 30.60 0.18 -2.83 16 20 C -0.11 -2.90 5.97 30.60 0.18 -2.72 16 21 C -0.06 -1.90 5.66 29.76 0.17 -1.73 16 22 H 0.05 1.70 7.67 -2.39 -0.02 1.68 16 23 H 0.04 1.47 7.67 -2.39 -0.02 1.45 16 24 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 25 H 0.11 4.61 6.27 -2.91 -0.02 4.59 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 2.02 6.96 -2.39 -0.02 2.00 16 28 H 0.07 2.48 5.86 -2.39 -0.01 2.47 16 29 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.21 6.18 -2.38 -0.01 2.20 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 34 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 Total: -1.00 -64.20 289.94 5.53 -58.67 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.06 Total: 17.67 kcal Atomic # 6 Polarization: -61.36 SS G_CDS: 2.86 Total: -58.50 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.25 Total: -44.98 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.66 Total: -16.55 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -64.20 5.53 -58.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.193 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds