Wall clock time and date at job start Mon Mar 30 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38119 * 119.63125 * 2 1 4 4 O 1.35642 * 120.39589 * 0.23909 * 3 2 1 5 5 C 1.41333 * 119.21074 * 179.97438 * 3 2 1 6 6 C 1.41151 * 120.42093 * 180.23397 * 5 3 2 7 7 H 1.08006 * 119.99925 * 218.93845 * 6 5 3 8 8 C 1.39927 * 120.00088 * 38.94137 * 6 5 3 9 9 N 1.30868 * 120.00512 * 19.88924 * 8 6 5 10 10 Si 1.86799 * 120.00059 * 199.88622 * 8 6 5 11 11 H 1.48496 * 109.47132 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47325 * 120.00202 * 10 8 6 13 13 H 1.48506 * 109.47458 * 240.00073 * 10 8 6 14 14 C 1.40407 * 119.15067 * 0.25778 * 5 3 2 15 15 C 1.50696 * 119.69577 * 179.76973 * 14 5 3 16 16 C 1.37207 * 120.60229 * 359.75117 * 14 5 3 17 17 C 1.38393 * 120.14049 * 359.97438 * 16 14 5 18 18 C 1.50739 * 122.40760 * 180.42166 * 17 16 14 19 19 C 1.52706 * 110.61050 * 342.20282 * 18 17 16 20 20 C 1.53315 * 108.38376 * 51.28043 * 19 18 17 21 21 C 1.50723 * 117.40898 * 179.75241 * 16 14 5 22 22 H 1.08997 * 109.46585 * 90.00711 * 1 2 3 23 23 H 1.08999 * 109.47044 * 210.00539 * 1 2 3 24 24 H 1.09002 * 109.46998 * 330.00214 * 1 2 3 25 25 H 0.96700 * 113.99577 * 272.28476 * 4 3 2 26 26 H 0.96997 * 120.00562 * 180.02562 * 9 8 6 27 27 H 1.09005 * 109.47210 * 90.00350 * 15 14 5 28 28 H 1.09005 * 109.47142 * 210.00129 * 15 14 5 29 29 H 1.08997 * 109.47698 * 330.00052 * 15 14 5 30 30 H 1.08990 * 109.25255 * 221.90184 * 18 17 16 31 31 H 1.09003 * 109.24293 * 102.48753 * 18 17 16 32 32 H 1.08998 * 109.67810 * 291.55321 * 19 18 17 33 33 H 1.09002 * 109.67952 * 171.00534 * 19 18 17 34 34 H 1.08998 * 109.68145 * 170.14425 * 20 19 18 35 35 H 1.08999 * 109.71683 * 49.60216 * 20 19 18 36 36 H 1.09004 * 109.24901 * 282.76530 * 21 16 14 37 37 H 1.09000 * 109.24669 * 42.17692 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.2006 0.0000 4 8 1.5123 2.3756 0.0049 5 6 3.6032 1.1902 0.0006 6 6 4.3268 2.4021 0.0055 7 1 5.2286 2.4950 -0.5816 8 6 3.8760 3.4830 0.7712 9 7 3.0439 3.2820 1.7611 10 14 4.4618 5.2132 0.3804 11 1 5.3910 5.1716 -0.7772 12 1 3.2940 6.0678 0.0467 13 1 5.1657 5.7760 1.5607 14 6 4.2781 -0.0410 -0.0044 15 6 5.7849 -0.0664 -0.0092 16 6 3.5783 -1.2212 -0.0046 17 6 2.1944 -1.2085 0.0006 18 6 1.3749 -2.4736 0.0100 19 6 2.2233 -3.6668 -0.4242 20 6 3.5059 -3.6793 0.4155 21 6 4.3753 -2.5004 -0.0159 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.2821 2.7005 -0.8763 26 1 2.7311 4.0314 2.2916 27 1 6.1514 -0.0750 1.0174 28 1 6.1316 -0.9612 -0.5262 29 1 6.1616 0.8185 -0.5221 30 1 0.5342 -2.3623 -0.6745 31 1 0.9967 -2.6492 1.0171 32 1 2.4765 -3.5722 -1.4801 33 1 1.6683 -4.5906 -0.2607 34 1 4.0442 -4.6125 0.2497 35 1 3.2549 -3.5830 1.4718 36 1 4.7512 -2.6808 -1.0231 37 1 5.2175 -2.4052 0.6695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215790686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:50 Heat of formation + Delta-G solvation = -51.429305 kcal Electronic energy + Delta-G solvation = -18470.462443 eV Core-core repulsion = 15790.259681 eV Total energy + Delta-G solvation = -2680.202762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14695 -36.62769 -34.52394 -33.36369 -32.66012 -29.38282 -28.34516 -28.03458 -25.45286 -23.43425 -22.31072 -21.51250 -18.86856 -18.80519 -16.84876 -16.03515 -15.39168 -14.87199 -14.33346 -13.96210 -13.36118 -13.11775 -12.95863 -12.69901 -12.45130 -12.19010 -11.96372 -11.71211 -11.42456 -11.38930 -11.21321 -11.00359 -10.96317 -10.69871 -10.44393 -10.34990 -10.06618 -9.74990 -9.61464 -9.43762 -8.89790 -8.53234 -7.02709 -6.82836 -6.56116 -4.19208 2.80596 2.82824 3.17211 3.19910 3.21462 4.08312 4.66445 5.36450 5.37223 5.39244 5.39872 5.86075 5.97953 6.05414 6.09845 6.12561 6.14188 6.18660 6.29230 6.36754 6.44317 6.49194 6.50050 6.57737 6.67399 6.69229 6.73646 6.84201 6.85772 7.04112 7.28150 7.48830 7.63591 7.87392 7.89509 8.11409 8.27484 8.59914 8.83339 9.03261 9.43260 10.43141 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.008382 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.720827 B = 3339.546775 C = 4095.449567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.100 4.100 3 C 0.046 3.954 4 O -0.466 6.466 5 C 0.108 3.892 6 C -0.481 4.481 7 H 0.077 0.923 8 C 0.093 3.907 9 N -0.760 5.760 10 Si 0.893 3.107 11 H -0.264 1.264 12 H -0.274 1.274 13 H -0.279 1.279 14 C -0.181 4.181 15 C -0.083 4.083 16 C -0.056 4.056 17 C -0.180 4.180 18 C -0.055 4.055 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.071 4.071 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.344 0.656 26 H 0.276 0.724 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -6.650 -3.345 7.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C 0.000 4.000 4 O -0.270 6.270 5 C 0.105 3.895 6 C -0.510 4.510 7 H 0.095 0.905 8 C -0.127 4.127 9 N -0.383 5.383 10 Si 0.719 3.281 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.205 1.205 14 C -0.183 4.183 15 C -0.140 4.140 16 C -0.056 4.056 17 C -0.181 4.181 18 C -0.092 4.092 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.108 4.108 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.194 0.806 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.223 -6.585 -2.507 7.152 hybrid contribution 0.114 1.074 -0.516 1.197 sum -1.108 -5.512 -3.023 6.383 Atomic orbital electron populations 1.20571 0.93662 1.01401 1.00155 1.19753 0.94184 0.92878 1.03272 1.18246 0.89925 0.83306 1.08489 1.84944 1.75560 1.37350 1.29162 1.17613 0.90843 0.92277 0.88773 1.19185 1.09841 0.95985 1.26008 0.90520 1.25620 0.93550 1.00015 0.93560 1.69755 1.23580 1.33167 1.11804 0.86528 0.79264 0.83114 0.79240 1.18828 1.19967 1.20459 1.19468 0.94403 0.92243 1.12164 1.20429 0.93572 0.99956 1.00018 1.18693 0.92293 0.93148 1.01507 1.18544 0.92088 0.92408 1.15051 1.20130 0.96815 0.92595 0.99620 1.21494 0.96485 0.97500 0.99723 1.21499 0.96396 0.97443 0.99948 1.20384 0.97358 0.92749 1.00335 0.93305 0.92998 0.92129 0.80562 0.91357 0.93594 0.94336 0.92453 0.92819 0.93114 0.92289 0.92988 0.92895 0.92160 0.92262 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 8.90 36.01 0.32 -1.62 16 2 C -0.10 -2.30 5.89 -104.37 -0.62 -2.92 16 3 C 0.05 1.17 6.16 -38.45 -0.24 0.93 16 4 O -0.47 -11.41 9.46 -18.63 -0.18 -11.58 16 5 C 0.11 2.84 5.35 -106.80 -0.57 2.27 16 6 C -0.48 -12.74 8.04 -37.84 -0.30 -13.04 16 7 H 0.08 1.98 6.67 -52.48 -0.35 1.63 16 8 C 0.09 2.40 4.43 -17.33 -0.08 2.33 16 9 N -0.76 -20.62 11.24 55.55 0.62 -19.99 16 10 Si 0.89 19.23 29.60 -169.99 -5.03 14.20 16 11 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 C -0.18 -4.36 5.91 -104.18 -0.62 -4.98 16 15 C -0.08 -1.74 8.69 36.00 0.31 -1.43 16 16 C -0.06 -1.24 5.71 -104.93 -0.60 -1.84 16 17 C -0.18 -3.91 5.76 -104.25 -0.60 -4.51 16 18 C -0.05 -0.96 4.43 -28.02 -0.12 -1.09 16 19 C -0.11 -1.74 5.97 -26.72 -0.16 -1.90 16 20 C -0.12 -1.78 5.97 -26.72 -0.16 -1.94 16 21 C -0.07 -1.27 4.41 -28.03 -0.12 -1.39 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 24 H 0.06 1.20 7.50 -51.93 -0.39 0.81 16 25 H 0.34 7.06 9.06 45.56 0.41 7.48 16 26 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.70 6.62 -51.93 -0.34 0.35 16 29 H 0.06 1.21 6.40 -51.93 -0.33 0.88 16 30 H 0.05 0.89 7.14 -51.93 -0.37 0.52 16 31 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.06 1.09 7.12 -51.93 -0.37 0.72 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -28.93 287.67 -8.40 -37.33 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.60 Total: 6.84 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -3.55 Total: -31.12 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.62 Total: -19.99 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.18 Total: -11.58 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.93 -8.40 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.104 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds