Wall clock time and date at job start Mon Mar 30 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38119 * 119.63125 * 2 1 4 4 O 1.35642 * 120.39589 * 0.23909 * 3 2 1 5 5 C 1.41333 * 119.21074 * 179.97438 * 3 2 1 6 6 C 1.41151 * 120.42093 * 180.23397 * 5 3 2 7 7 H 1.08006 * 119.99925 * 218.93845 * 6 5 3 8 8 C 1.39927 * 120.00088 * 38.94137 * 6 5 3 9 9 N 1.30868 * 120.00512 * 19.88924 * 8 6 5 10 10 Si 1.86799 * 120.00059 * 199.88622 * 8 6 5 11 11 H 1.48496 * 109.47132 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47325 * 120.00202 * 10 8 6 13 13 H 1.48506 * 109.47458 * 240.00073 * 10 8 6 14 14 C 1.40407 * 119.15067 * 0.25778 * 5 3 2 15 15 C 1.50696 * 119.69577 * 179.76973 * 14 5 3 16 16 C 1.37207 * 120.60229 * 359.75117 * 14 5 3 17 17 C 1.38393 * 120.14049 * 359.97438 * 16 14 5 18 18 C 1.50739 * 122.40760 * 180.42166 * 17 16 14 19 19 C 1.52706 * 110.61050 * 342.20282 * 18 17 16 20 20 C 1.53315 * 108.38376 * 51.28043 * 19 18 17 21 21 C 1.50723 * 117.40898 * 179.75241 * 16 14 5 22 22 H 1.08997 * 109.46585 * 90.00711 * 1 2 3 23 23 H 1.08999 * 109.47044 * 210.00539 * 1 2 3 24 24 H 1.09002 * 109.46998 * 330.00214 * 1 2 3 25 25 H 0.96700 * 113.99577 * 272.28476 * 4 3 2 26 26 H 0.96997 * 120.00562 * 180.02562 * 9 8 6 27 27 H 1.09005 * 109.47210 * 90.00350 * 15 14 5 28 28 H 1.09005 * 109.47142 * 210.00129 * 15 14 5 29 29 H 1.08997 * 109.47698 * 330.00052 * 15 14 5 30 30 H 1.08990 * 109.25255 * 221.90184 * 18 17 16 31 31 H 1.09003 * 109.24293 * 102.48753 * 18 17 16 32 32 H 1.08998 * 109.67810 * 291.55321 * 19 18 17 33 33 H 1.09002 * 109.67952 * 171.00534 * 19 18 17 34 34 H 1.08998 * 109.68145 * 170.14425 * 20 19 18 35 35 H 1.08999 * 109.71683 * 49.60216 * 20 19 18 36 36 H 1.09004 * 109.24901 * 282.76530 * 21 16 14 37 37 H 1.09000 * 109.24669 * 42.17692 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.2006 0.0000 4 8 1.5123 2.3756 0.0049 5 6 3.6032 1.1902 0.0006 6 6 4.3268 2.4021 0.0055 7 1 5.2286 2.4950 -0.5816 8 6 3.8760 3.4830 0.7712 9 7 3.0439 3.2820 1.7611 10 14 4.4618 5.2132 0.3804 11 1 5.3910 5.1716 -0.7772 12 1 3.2940 6.0678 0.0467 13 1 5.1657 5.7760 1.5607 14 6 4.2781 -0.0410 -0.0044 15 6 5.7849 -0.0664 -0.0092 16 6 3.5783 -1.2212 -0.0046 17 6 2.1944 -1.2085 0.0006 18 6 1.3749 -2.4736 0.0100 19 6 2.2233 -3.6668 -0.4242 20 6 3.5059 -3.6793 0.4155 21 6 4.3753 -2.5004 -0.0159 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.2821 2.7005 -0.8763 26 1 2.7311 4.0314 2.2916 27 1 6.1514 -0.0750 1.0174 28 1 6.1316 -0.9612 -0.5262 29 1 6.1616 0.8185 -0.5221 30 1 0.5342 -2.3623 -0.6745 31 1 0.9967 -2.6492 1.0171 32 1 2.4765 -3.5722 -1.4801 33 1 1.6683 -4.5906 -0.2607 34 1 4.0442 -4.6125 0.2497 35 1 3.2549 -3.5830 1.4718 36 1 4.7512 -2.6808 -1.0231 37 1 5.2175 -2.4052 0.6695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215790686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:50 Heat of formation + Delta-G solvation = -67.583832 kcal Electronic energy + Delta-G solvation = -18471.162956 eV Core-core repulsion = 15790.259681 eV Total energy + Delta-G solvation = -2680.903275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82293 -38.29612 -36.25075 -35.01416 -34.43541 -31.02441 -29.89256 -29.69446 -27.22408 -25.10471 -23.83659 -23.08525 -20.52983 -20.42186 -18.73149 -17.79092 -17.05783 -16.63246 -15.89396 -15.60475 -14.77206 -14.70941 -14.56011 -14.32035 -14.01227 -13.74131 -13.60682 -13.32087 -13.09667 -12.91067 -12.85217 -12.72317 -12.64222 -12.20484 -12.16426 -11.69994 -11.58298 -11.36416 -11.21557 -10.99596 -10.70456 -10.33634 -8.86018 -8.60951 -8.44761 -6.15806 0.99835 1.04145 1.39375 1.47408 1.51974 2.28432 2.82882 3.52562 3.97745 4.07430 4.16711 4.20943 4.45369 4.58461 4.59590 4.66153 4.76946 4.79384 4.84065 4.89486 4.97311 5.04130 5.05437 5.13984 5.18247 5.21791 5.27323 5.33902 5.38130 5.42690 5.57575 5.71950 5.89198 6.08448 6.11069 6.27750 6.51402 6.73461 6.97622 7.10909 7.61955 8.55549 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.008382 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.720827 B = 3339.546775 C = 4095.449567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.120 4.120 3 C 0.020 3.980 4 O -0.478 6.478 5 C 0.068 3.932 6 C -0.511 4.511 7 H 0.069 0.931 8 C 0.056 3.944 9 N -0.805 5.805 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.270 1.270 13 H -0.275 1.275 14 C -0.204 4.204 15 C -0.076 4.076 16 C -0.069 4.069 17 C -0.178 4.178 18 C -0.056 4.056 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.071 4.071 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.355 0.645 26 H 0.277 0.723 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 -8.819 -4.027 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.025 4.025 4 O -0.283 6.283 5 C 0.065 3.935 6 C -0.541 4.541 7 H 0.087 0.913 8 C -0.161 4.161 9 N -0.430 5.430 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.195 1.195 13 H -0.200 1.200 14 C -0.205 4.205 15 C -0.132 4.132 16 C -0.069 4.069 17 C -0.180 4.180 18 C -0.093 4.093 19 C -0.148 4.148 20 C -0.150 4.150 21 C -0.108 4.108 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.207 0.793 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.516 -8.767 -3.201 9.456 hybrid contribution 0.164 1.576 -0.337 1.619 sum -1.352 -7.192 -3.538 8.128 Atomic orbital electron populations 1.20532 0.91122 1.01660 1.01550 1.20247 0.96360 0.92646 1.02800 1.18580 0.90121 0.84267 1.09577 1.84893 1.75492 1.37682 1.30267 1.18056 0.91868 0.93343 0.90199 1.19304 1.10361 0.97292 1.27168 0.91265 1.26315 0.93449 1.03465 0.92833 1.69838 1.25882 1.34109 1.13158 0.85469 0.78741 0.78245 0.78949 1.18549 1.19490 1.19994 1.19965 0.96049 0.92544 1.11950 1.20381 0.91988 1.00839 1.00023 1.19246 0.93028 0.94444 1.00229 1.19208 0.92684 0.93914 1.12146 1.20219 0.97048 0.91573 1.00454 1.21500 0.96170 0.97537 0.99586 1.21510 0.96441 0.97598 0.99436 1.20439 0.97335 0.91661 1.01339 0.91216 0.91036 0.93470 0.79335 0.91322 0.93924 0.91404 0.93542 0.91457 0.92568 0.92145 0.89814 0.89636 0.92915 0.90871 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.42 8.90 71.24 0.63 -2.79 16 2 C -0.12 -5.49 5.89 -19.70 -0.12 -5.60 16 3 C 0.02 1.04 6.16 23.00 0.14 1.18 16 4 O -0.48 -24.28 9.46 -89.56 -0.85 -25.12 16 5 C 0.07 3.69 5.35 -21.27 -0.11 3.58 16 6 C -0.51 -28.24 8.04 23.39 0.19 -28.05 16 7 H 0.07 3.75 6.67 -2.91 -0.02 3.73 16 8 C 0.06 2.97 4.43 85.25 0.38 3.35 16 9 N -0.80 -45.38 11.24 21.83 0.25 -45.13 16 10 Si 0.96 40.82 29.60 68.60 2.03 42.85 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 C -0.20 -9.94 5.91 -19.58 -0.12 -10.05 16 15 C -0.08 -3.19 8.69 71.23 0.62 -2.57 16 16 C -0.07 -2.98 5.71 -20.06 -0.11 -3.09 16 17 C -0.18 -7.51 5.76 -19.62 -0.11 -7.62 16 18 C -0.06 -1.78 4.43 29.76 0.13 -1.65 16 19 C -0.11 -2.86 5.97 30.60 0.18 -2.68 16 20 C -0.11 -3.00 5.97 30.60 0.18 -2.82 16 21 C -0.07 -2.32 4.41 29.75 0.13 -2.19 16 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.07 2.34 6.66 -2.39 -0.02 2.32 16 24 H 0.05 1.86 7.50 -2.39 -0.02 1.84 16 25 H 0.35 15.25 9.06 -74.06 -0.67 14.58 16 26 H 0.28 14.51 8.30 -92.71 -0.77 13.74 16 27 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.07 2.38 6.62 -2.38 -0.02 2.36 16 29 H 0.05 2.01 6.40 -2.39 -0.02 2.00 16 30 H 0.07 1.97 7.14 -2.39 -0.02 1.96 16 31 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.07 2.21 8.08 -2.38 -0.02 2.19 16 37 H 0.06 2.09 7.12 -2.39 -0.02 2.07 16 Total: -1.00 -64.37 287.67 3.85 -60.52 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.41 Total: 27.89 kcal Atomic # 6 Polarization: -63.02 SS G_CDS: 2.02 Total: -61.01 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.25 Total: -45.13 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.85 Total: -25.12 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -64.37 3.85 -60.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.064 kcal (2) G-P(sol) polarization free energy of solvation -64.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds