Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35630 * 116.99801 * 2 1 4 4 C 1.38452 * 120.41869 * 359.97438 * 3 2 1 5 5 C 1.37960 * 119.82048 * 180.11917 * 4 3 2 6 6 C 1.50695 * 119.35760 * 179.97438 * 5 4 3 7 7 C 1.39601 * 121.28795 * 359.93305 * 5 4 3 8 8 C 1.35965 * 120.01631 * 359.77520 * 7 5 4 9 9 C 1.41022 * 120.41148 * 180.02562 * 3 2 1 10 10 C 1.41152 * 119.98364 * 0.10861 * 9 3 2 11 11 H 1.08007 * 119.99682 * 219.14189 * 10 9 3 12 12 C 1.39931 * 120.00485 * 39.15043 * 10 9 3 13 13 N 1.30871 * 119.99440 * 20.04507 * 12 10 9 14 14 Si 1.86792 * 120.00331 * 200.05210 * 12 10 9 15 15 H 1.48506 * 109.47334 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47373 * 119.99459 * 14 12 10 17 17 H 1.48498 * 109.47367 * 239.99831 * 14 12 10 18 18 C 1.50642 * 122.83057 * 180.52470 * 8 7 5 19 19 C 1.52725 * 110.66908 * 342.38061 * 18 8 7 20 20 C 1.53358 * 108.24262 * 50.85456 * 19 18 8 21 21 C 1.50723 * 117.36049 * 179.74873 * 7 5 4 22 22 H 1.08999 * 109.46680 * 299.99421 * 1 2 3 23 23 H 1.09001 * 109.47268 * 59.99397 * 1 2 3 24 24 H 1.08996 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.09277 * 0.09734 * 4 3 2 26 26 H 1.09000 * 109.47003 * 269.99988 * 6 5 4 27 27 H 1.08997 * 109.47186 * 29.99812 * 6 5 4 28 28 H 1.08996 * 109.47143 * 149.99988 * 6 5 4 29 29 H 0.97001 * 119.99520 * 180.02562 * 13 12 10 30 30 H 1.08997 * 109.23696 * 222.07442 * 18 8 7 31 31 H 1.08996 * 109.23636 * 102.68650 * 18 8 7 32 32 H 1.09004 * 109.70230 * 170.53836 * 19 18 8 33 33 H 1.08999 * 109.70737 * 291.11933 * 19 18 8 34 34 H 1.08994 * 109.70326 * 50.26116 * 20 19 18 35 35 H 1.09006 * 109.69828 * 170.86246 * 20 19 18 36 36 H 1.09000 * 109.22852 * 42.04583 * 21 7 5 37 37 H 1.08995 * 109.23423 * 282.67287 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2992 2.3751 -0.0005 5 6 1.9383 3.5977 -0.0030 6 6 1.1165 4.8609 -0.0042 7 6 3.3314 3.6876 -0.0036 8 6 4.0859 2.5566 0.0029 9 6 3.4525 1.2925 -0.0005 10 6 4.2295 0.1140 -0.0034 11 1 5.1327 0.0613 0.5865 12 6 3.8297 -0.9858 -0.7706 13 7 2.9949 -0.8212 -1.7650 14 14 4.4872 -2.6889 -0.3753 15 1 5.4085 -2.6065 0.7866 16 1 3.3555 -3.5927 -0.0470 17 1 5.2210 -3.2216 -1.5513 18 6 5.5921 2.5797 0.0142 19 6 6.1135 3.9494 -0.4153 20 6 5.3999 5.0186 0.4209 21 6 3.9364 5.0680 -0.0123 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.2202 2.3282 0.0006 26 1 0.9174 5.1639 -1.0321 27 1 0.1729 4.6810 0.5108 28 1 1.6648 5.6516 0.5079 29 1 2.7175 -1.5837 -2.2965 30 1 5.9681 1.8209 -0.6720 31 1 5.9471 2.3599 1.0211 32 1 7.1883 4.0043 -0.2424 33 1 5.9028 4.1078 -1.4730 34 1 5.4617 4.7602 1.4780 35 1 5.8661 5.9893 0.2516 36 1 3.3806 5.7079 0.6730 37 1 3.8738 5.4813 -1.0189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215790755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = -38.480422 kcal Electronic energy + Delta-G solvation = -18472.126332 eV Core-core repulsion = 15792.485076 eV Total energy + Delta-G solvation = -2679.641256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.10091 -37.25105 -34.36915 -33.93434 -31.70577 -28.82619 -28.40993 -27.35291 -26.17349 -23.41024 -22.63321 -21.31250 -19.70864 -18.35610 -17.00217 -15.94128 -15.28971 -14.79767 -14.45082 -14.19580 -13.80263 -13.24009 -13.00265 -12.76170 -12.56111 -12.31040 -11.98282 -11.82667 -11.62150 -11.26712 -11.03500 -11.01296 -10.77774 -10.68895 -10.34536 -10.28606 -10.16178 -9.95143 -9.42903 -9.24685 -9.06826 -8.74090 -7.13950 -6.63190 -6.44874 -4.11434 2.81203 3.01449 3.20413 3.23941 3.26025 4.13447 4.73441 4.81542 5.48995 5.52843 5.55680 5.56919 5.93907 5.98643 6.03842 6.08241 6.16645 6.18565 6.26178 6.27762 6.29280 6.37356 6.45609 6.46491 6.60426 6.63801 6.72739 6.92312 6.98698 7.05171 7.20528 7.36011 7.49661 7.86080 7.89169 8.11485 8.24078 8.62471 8.68958 9.07001 9.28961 10.45417 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.010144 C = 0.007196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.507852 B = 2759.607463 C = 3890.332319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.279 6.279 3 C 0.070 3.930 4 C -0.186 4.186 5 C -0.176 4.176 6 C -0.091 4.091 7 C -0.081 4.081 8 C -0.143 4.143 9 C 0.098 3.902 10 C -0.469 4.469 11 H 0.077 0.923 12 C 0.092 3.908 13 N -0.775 5.775 14 Si 0.896 3.104 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.280 1.280 18 C -0.051 4.051 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.069 4.069 22 H 0.032 0.968 23 H 0.037 0.963 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.274 0.726 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 5.228 1.988 5.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.191 6.191 3 C 0.024 3.976 4 C -0.205 4.205 5 C -0.177 4.177 6 C -0.147 4.147 7 C -0.082 4.082 8 C -0.144 4.144 9 C 0.095 3.905 10 C -0.499 4.499 11 H 0.095 0.905 12 C -0.127 4.127 13 N -0.400 5.400 14 Si 0.721 3.279 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.206 1.206 18 C -0.088 4.088 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.106 4.106 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.443 4.911 1.792 5.246 hybrid contribution -0.319 -0.812 -0.010 0.873 sum -0.761 4.099 1.781 4.534 Atomic orbital electron populations 1.22674 0.83122 1.01181 0.99250 1.86195 1.16761 1.27345 1.88783 1.19128 0.92307 0.82561 1.03601 1.20487 0.97269 0.92578 1.10142 1.18884 0.92709 0.93112 1.13039 1.20535 0.98185 0.96105 0.99915 1.18571 0.92233 0.93143 1.04213 1.18968 0.93761 0.91485 1.10216 1.16930 0.88348 0.92484 0.92733 1.19157 1.08932 0.96569 1.25213 0.90515 1.25589 0.93697 1.00042 0.93398 1.69758 1.25591 1.32404 1.12203 0.86478 0.79321 0.82901 0.79184 1.18731 1.20049 1.20575 1.20054 0.92926 0.95543 1.00304 1.21560 0.98136 0.96137 0.99627 1.21512 0.95912 0.97905 0.99953 1.20356 0.94764 0.95332 1.00123 0.94942 0.94459 0.90661 0.88806 0.93682 0.93883 0.92926 0.91497 0.91144 0.93127 0.93020 0.92370 0.92248 0.93099 0.92216 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.82 101.05 0.99 1.67 16 2 O -0.28 -7.04 7.40 -18.59 -0.14 -7.18 16 3 C 0.07 1.81 6.15 -38.45 -0.24 1.58 16 4 C -0.19 -4.38 8.65 -39.60 -0.34 -4.72 16 5 C -0.18 -3.91 5.90 -104.22 -0.62 -4.52 16 6 C -0.09 -1.61 9.49 36.00 0.34 -1.27 16 7 C -0.08 -1.81 5.71 -104.92 -0.60 -2.41 16 8 C -0.14 -3.44 5.76 -104.26 -0.60 -4.04 16 9 C 0.10 2.61 5.38 -106.54 -0.57 2.04 16 10 C -0.47 -12.59 7.53 -37.84 -0.28 -12.88 16 11 H 0.08 2.00 7.48 -52.48 -0.39 1.61 16 12 C 0.09 2.38 4.39 -17.33 -0.08 2.31 16 13 N -0.77 -20.83 11.26 55.55 0.63 -20.20 16 14 Si 0.90 19.69 29.60 -169.99 -5.03 14.66 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 C -0.05 -1.07 4.77 -28.05 -0.13 -1.21 16 19 C -0.12 -2.02 5.99 -26.69 -0.16 -2.18 16 20 C -0.12 -1.86 5.99 -26.70 -0.16 -2.02 16 21 C -0.07 -1.23 4.95 -28.03 -0.14 -1.37 16 22 H 0.03 0.58 7.68 -51.93 -0.40 0.18 16 23 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.09 2.01 6.34 -52.48 -0.33 1.67 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 28 H 0.05 0.84 5.88 -51.93 -0.31 0.54 16 29 H 0.27 6.82 8.30 -40.82 -0.34 6.48 16 30 H 0.07 1.55 7.35 -51.93 -0.38 1.17 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.98 6.22 -51.93 -0.32 0.66 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -28.67 290.11 -8.22 -36.89 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.46 Total: 0.48 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.59 Total: -29.02 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.63 Total: -20.20 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.14 Total: -7.18 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.67 -8.22 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.590 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds