Wall clock time and date at job start Mon Mar 30 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38427 * 119.82389 * 2 1 4 4 C 1.37865 * 120.17166 * 180.25698 * 3 2 1 5 5 C 1.50702 * 120.08826 * 179.74949 * 4 3 2 6 6 C 1.39875 * 119.82282 * 359.46467 * 4 3 2 7 7 C 1.47167 * 120.17035 * 180.23493 * 6 4 3 8 8 O 1.21254 * 120.00152 * 354.07893 * 7 6 4 9 9 C 1.50702 * 119.99741 * 174.08030 * 7 6 4 10 10 H 1.08999 * 109.47085 * 35.00270 * 9 7 6 11 11 C 1.52998 * 109.47010 * 274.99754 * 9 7 6 12 12 C 1.50700 * 109.46894 * 154.99913 * 9 7 6 13 13 H 1.08002 * 120.00119 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99998 * 179.97438 * 12 9 7 15 15 N 1.31512 * 120.00050 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99995 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47074 * 89.99797 * 16 14 12 18 18 H 1.48501 * 109.47170 * 209.99845 * 16 14 12 19 19 H 1.48497 * 109.47495 * 329.99622 * 16 14 12 20 20 C 1.39830 * 119.65894 * 0.25831 * 6 4 3 21 21 C 1.37908 * 119.82393 * 359.97438 * 20 6 4 22 22 C 1.50699 * 119.91858 * 179.97438 * 21 20 6 23 23 H 1.08992 * 109.47229 * 270.29875 * 1 2 3 24 24 H 1.09008 * 109.46971 * 30.30088 * 1 2 3 25 25 H 1.09005 * 109.47146 * 150.29358 * 1 2 3 26 26 H 1.07997 * 119.91673 * 359.97421 * 3 2 1 27 27 H 1.09005 * 109.46561 * 262.89463 * 5 4 3 28 28 H 1.08998 * 109.46925 * 142.90521 * 5 4 3 29 29 H 1.08990 * 109.47338 * 22.89850 * 5 4 3 30 30 H 1.09000 * 109.47007 * 180.02562 * 11 9 7 31 31 H 1.08996 * 109.47153 * 299.99991 * 11 9 7 32 32 H 1.08997 * 109.47420 * 60.00173 * 11 9 7 33 33 H 0.97003 * 120.00308 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.08984 * 179.97438 * 20 6 4 35 35 H 1.08998 * 109.47001 * 89.99572 * 22 21 20 36 36 H 1.08994 * 109.47461 * 210.00285 * 22 21 20 37 37 H 1.09000 * 109.46936 * 330.00389 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2009 0.0000 4 6 3.5741 1.2093 -0.0053 5 6 4.3216 2.5178 -0.0110 6 6 4.2771 0.0001 0.0006 7 6 5.7487 0.0001 0.0001 8 8 6.3550 1.0440 -0.1136 9 6 6.5023 -1.2974 0.1411 10 1 5.9548 -2.0923 -0.3652 11 6 6.6488 -1.6434 1.6242 12 6 7.8684 -1.1547 -0.4789 13 1 8.1618 -0.2180 -0.9295 14 6 8.7442 -2.2196 -0.4699 15 7 8.3875 -3.3597 0.0801 16 14 10.4378 -2.0425 -1.2377 17 1 11.3989 -1.5639 -0.2117 18 1 10.8851 -3.3591 -1.7590 19 1 10.3760 -1.0638 -2.3528 20 6 3.5744 -1.2088 0.0064 21 6 2.1953 -1.2005 0.0068 22 6 1.4358 -2.5021 0.0125 23 1 -0.3633 0.0054 1.0276 24 1 -0.3633 0.8873 -0.5185 25 1 -0.3634 -0.8926 -0.5093 26 1 1.6512 2.1338 -0.0004 27 1 4.6083 2.7680 -1.0325 28 1 5.2160 2.4280 0.6055 29 1 3.6815 3.3037 0.3896 30 1 7.1943 -2.5816 1.7261 31 1 7.1964 -0.8485 2.1304 32 1 5.6608 -1.7466 2.0726 33 1 9.0037 -4.1088 0.0868 34 1 4.1101 -2.1466 0.0105 35 1 1.2531 -2.8116 1.0415 36 1 0.4839 -2.3696 -0.5016 37 1 2.0213 -3.2666 -0.4983 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235399381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:07 Heat of formation + Delta-G solvation = -32.639215 kcal Electronic energy + Delta-G solvation = -17732.382451 eV Core-core repulsion = 15052.994489 eV Total energy + Delta-G solvation = -2679.387962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.85543 -37.88129 -34.05605 -33.61099 -32.26187 -30.47196 -28.93137 -27.33951 -25.16255 -24.91300 -22.88182 -22.07718 -20.06214 -18.28363 -16.32659 -15.92152 -15.37013 -14.74620 -14.59499 -14.37248 -13.78940 -13.66415 -13.36158 -12.79184 -12.72528 -12.56849 -12.47894 -12.31555 -11.89071 -11.60274 -11.51689 -11.13514 -11.03993 -10.99519 -10.75550 -10.63021 -10.58903 -10.21137 -10.00422 -8.95681 -8.46392 -8.44179 -8.16318 -8.11743 -6.02668 -4.07203 1.18394 1.64900 3.20334 3.33137 3.38838 3.44786 4.17909 4.43510 4.87122 4.94212 5.01267 5.13652 5.24092 5.30032 5.40217 5.50828 5.64180 5.72723 5.75819 5.87112 5.92541 6.02463 6.11251 6.23131 6.28917 6.47870 6.55588 6.63730 6.74169 6.81272 6.88877 7.02483 7.05821 7.25372 7.53179 7.78416 8.02043 8.27119 8.71019 8.97955 9.57455 11.04219 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.006226 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.486775 B = 4496.244917 C = 5133.077910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.038 4.038 5 C -0.118 4.118 6 C -0.160 4.160 7 C 0.396 3.604 8 O -0.459 6.459 9 C 0.006 3.994 10 H 0.051 0.949 11 C -0.128 4.128 12 C -0.505 4.505 13 H 0.067 0.933 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.060 4.060 21 C -0.113 4.113 22 C -0.113 4.113 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.031 0.969 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.138 0.862 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 3.717 0.896 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.157 4.157 4 C -0.038 4.038 5 C -0.174 4.174 6 C -0.161 4.161 7 C 0.275 3.725 8 O -0.335 6.335 9 C -0.013 4.013 10 H 0.069 0.931 11 C -0.186 4.186 12 C -0.543 4.543 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.078 4.078 21 C -0.113 4.113 22 C -0.170 4.170 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.138 0.862 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.454 4.083 0.863 15.044 hybrid contribution 0.838 -0.063 -0.373 0.919 sum -13.616 4.021 0.490 14.206 Atomic orbital electron populations 1.20871 0.91561 1.02670 1.02189 1.19860 0.95671 0.92700 0.98614 1.20792 0.93339 0.97267 1.04320 1.20233 0.93356 0.95244 0.94999 1.21040 1.00701 0.92319 1.03385 1.20927 0.96958 0.93090 1.05129 1.23321 0.86604 0.92621 0.69923 1.90300 1.71420 1.35164 1.36621 1.19128 0.96146 0.90408 0.95623 0.93089 1.21659 0.98122 1.03728 0.95086 1.21102 0.97813 0.98718 1.36666 0.91481 1.24932 0.98617 0.95110 0.95361 1.69864 1.36126 1.02502 1.44826 0.86496 0.84080 0.77278 0.79623 1.20615 1.21245 1.19824 1.21533 0.93105 0.98277 0.94907 1.19676 0.93678 0.94816 1.03150 1.20817 0.99725 0.94246 1.02186 0.91214 0.91810 0.91118 0.86224 0.90984 0.88865 0.93036 0.88783 0.95009 0.96752 0.92929 0.84395 0.91377 0.91534 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.59 36.01 0.35 -0.79 16 2 C -0.07 -0.93 5.89 -104.50 -0.62 -1.54 16 3 C -0.14 -2.03 9.31 -39.65 -0.37 -2.40 16 4 C -0.04 -0.66 5.92 -104.14 -0.62 -1.28 16 5 C -0.12 -1.94 8.73 36.01 0.31 -1.63 16 6 C -0.16 -3.14 5.87 -105.06 -0.62 -3.75 16 7 C 0.40 9.19 6.16 -30.68 -0.19 9.00 16 8 O -0.46 -11.36 12.81 5.58 0.07 -11.29 16 9 C 0.01 0.14 2.06 -92.92 -0.19 -0.05 16 10 H 0.05 1.30 6.52 -51.93 -0.34 0.96 16 11 C -0.13 -3.08 8.95 37.16 0.33 -2.75 16 12 C -0.50 -14.30 8.33 -34.44 -0.29 -14.58 16 13 H 0.07 1.97 7.03 -52.49 -0.37 1.60 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 16 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.06 -1.06 9.04 -39.11 -0.35 -1.41 16 21 C -0.11 -1.66 5.87 -104.69 -0.61 -2.27 16 22 C -0.11 -1.28 9.60 36.01 0.35 -0.94 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 25 H 0.07 0.61 5.92 -51.93 -0.31 0.30 16 26 H 0.12 1.43 8.05 -52.49 -0.42 1.01 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.74 5.88 -51.93 -0.31 1.44 16 29 H 0.05 0.68 8.03 -51.93 -0.42 0.27 16 30 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.14 2.45 6.36 -52.49 -0.33 2.11 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.63 5.92 -51.93 -0.31 0.32 16 37 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -30.01 300.58 -7.61 -37.62 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.20 Total: -0.28 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -2.61 Total: -22.79 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.63 Total: -24.51 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.01 -7.61 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235399381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.976 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds