Wall clock time and date at job start Mon Mar 30 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38427 * 119.82389 * 2 1 4 4 C 1.37865 * 120.17166 * 180.25698 * 3 2 1 5 5 C 1.50702 * 120.08826 * 179.74949 * 4 3 2 6 6 C 1.39875 * 119.82282 * 359.46467 * 4 3 2 7 7 C 1.47167 * 120.17035 * 180.23493 * 6 4 3 8 8 O 1.21254 * 120.00152 * 354.07893 * 7 6 4 9 9 C 1.50702 * 119.99741 * 174.08030 * 7 6 4 10 10 H 1.08999 * 109.47085 * 35.00270 * 9 7 6 11 11 C 1.52998 * 109.47010 * 274.99754 * 9 7 6 12 12 C 1.50700 * 109.46894 * 154.99913 * 9 7 6 13 13 H 1.08002 * 120.00119 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99998 * 179.97438 * 12 9 7 15 15 N 1.31512 * 120.00050 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99995 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47074 * 89.99797 * 16 14 12 18 18 H 1.48501 * 109.47170 * 209.99845 * 16 14 12 19 19 H 1.48497 * 109.47495 * 329.99622 * 16 14 12 20 20 C 1.39830 * 119.65894 * 0.25831 * 6 4 3 21 21 C 1.37908 * 119.82393 * 359.97438 * 20 6 4 22 22 C 1.50699 * 119.91858 * 179.97438 * 21 20 6 23 23 H 1.08992 * 109.47229 * 270.29875 * 1 2 3 24 24 H 1.09008 * 109.46971 * 30.30088 * 1 2 3 25 25 H 1.09005 * 109.47146 * 150.29358 * 1 2 3 26 26 H 1.07997 * 119.91673 * 359.97421 * 3 2 1 27 27 H 1.09005 * 109.46561 * 262.89463 * 5 4 3 28 28 H 1.08998 * 109.46925 * 142.90521 * 5 4 3 29 29 H 1.08990 * 109.47338 * 22.89850 * 5 4 3 30 30 H 1.09000 * 109.47007 * 180.02562 * 11 9 7 31 31 H 1.08996 * 109.47153 * 299.99991 * 11 9 7 32 32 H 1.08997 * 109.47420 * 60.00173 * 11 9 7 33 33 H 0.97003 * 120.00308 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.08984 * 179.97438 * 20 6 4 35 35 H 1.08998 * 109.47001 * 89.99572 * 22 21 20 36 36 H 1.08994 * 109.47461 * 210.00285 * 22 21 20 37 37 H 1.09000 * 109.46936 * 330.00389 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2009 0.0000 4 6 3.5741 1.2093 -0.0053 5 6 4.3216 2.5178 -0.0110 6 6 4.2771 0.0001 0.0006 7 6 5.7487 0.0001 0.0001 8 8 6.3550 1.0440 -0.1136 9 6 6.5023 -1.2974 0.1411 10 1 5.9548 -2.0923 -0.3652 11 6 6.6488 -1.6434 1.6242 12 6 7.8684 -1.1547 -0.4789 13 1 8.1618 -0.2180 -0.9295 14 6 8.7442 -2.2196 -0.4699 15 7 8.3875 -3.3597 0.0801 16 14 10.4378 -2.0425 -1.2377 17 1 11.3989 -1.5639 -0.2117 18 1 10.8851 -3.3591 -1.7590 19 1 10.3760 -1.0638 -2.3528 20 6 3.5744 -1.2088 0.0064 21 6 2.1953 -1.2005 0.0068 22 6 1.4358 -2.5021 0.0125 23 1 -0.3633 0.0054 1.0276 24 1 -0.3633 0.8873 -0.5185 25 1 -0.3634 -0.8926 -0.5093 26 1 1.6512 2.1338 -0.0004 27 1 4.6083 2.7680 -1.0325 28 1 5.2160 2.4280 0.6055 29 1 3.6815 3.3037 0.3896 30 1 7.1943 -2.5816 1.7261 31 1 7.1964 -0.8485 2.1304 32 1 5.6608 -1.7466 2.0726 33 1 9.0037 -4.1088 0.0868 34 1 4.1101 -2.1466 0.0105 35 1 1.2531 -2.8116 1.0415 36 1 0.4839 -2.3696 -0.5016 37 1 2.0213 -3.2666 -0.4983 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235399381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:06 Heat of formation + Delta-G solvation = -47.989971 kcal Electronic energy + Delta-G solvation = -17733.048110 eV Core-core repulsion = 15052.994489 eV Total energy + Delta-G solvation = -2680.053621 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.27127 -39.44199 -35.94860 -34.94925 -33.65066 -32.27956 -30.14321 -28.45081 -27.28747 -26.14683 -24.55706 -23.33880 -21.54639 -19.85429 -18.37066 -17.45867 -16.83301 -16.52863 -15.95282 -15.74498 -15.23766 -14.99266 -14.94240 -14.19998 -14.03422 -13.75429 -13.71974 -13.56136 -13.43314 -13.04129 -12.82288 -12.75821 -12.63787 -12.59898 -12.26002 -12.21476 -12.16656 -12.07717 -11.75547 -11.05888 -10.56388 -9.95791 -9.68175 -9.35223 -8.17026 -6.29483 -0.18251 0.42549 1.38256 1.38971 1.50192 1.65073 2.39823 2.81654 3.11251 3.41745 3.81476 3.91595 3.98381 4.23201 4.26200 4.59592 4.64543 4.69060 4.73710 4.77350 4.78384 4.84162 4.88222 4.96127 4.99997 5.01497 5.05902 5.17008 5.23281 5.41030 5.43069 5.47645 5.66351 5.67911 5.69784 5.92578 6.07609 6.20691 6.74756 6.92658 7.37978 8.88431 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.006226 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.486775 B = 4496.244917 C = 5133.077910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.056 4.056 3 C -0.136 4.136 4 C -0.051 4.051 5 C -0.114 4.114 6 C -0.194 4.194 7 C 0.394 3.606 8 O -0.489 6.489 9 C 0.001 3.999 10 H 0.042 0.958 11 C -0.115 4.115 12 C -0.534 4.534 13 H 0.045 0.955 14 C 0.020 3.980 15 N -0.910 5.910 16 Si 0.956 3.044 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.276 1.276 20 C -0.074 4.074 21 C -0.115 4.115 22 C -0.113 4.113 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.154 0.846 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.019 0.981 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.678 3.890 0.862 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.153 4.153 4 C -0.051 4.051 5 C -0.170 4.170 6 C -0.195 4.195 7 C 0.276 3.724 8 O -0.368 6.368 9 C -0.018 4.018 10 H 0.060 0.940 11 C -0.173 4.173 12 C -0.571 4.571 13 H 0.063 0.937 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.092 4.092 21 C -0.115 4.115 22 C -0.169 4.169 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.171 0.829 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.298 4.239 0.835 17.829 hybrid contribution 1.596 -0.135 -0.355 1.640 sum -15.702 4.104 0.480 16.236 Atomic orbital electron populations 1.20991 0.87996 1.04396 1.03766 1.20406 0.98118 0.91682 0.95418 1.21162 0.92014 0.99279 1.02890 1.20414 0.94856 0.94422 0.95411 1.20961 1.00213 0.93306 1.02543 1.20622 0.94546 0.95172 1.09131 1.23297 0.88736 0.91195 0.69171 1.90280 1.72574 1.35500 1.38397 1.19093 0.95191 0.91718 0.95825 0.94037 1.21467 0.99082 1.02055 0.94658 1.21276 0.99834 0.98224 1.37814 0.93672 1.25623 1.01881 0.94754 0.95633 1.69947 1.37222 1.02837 1.44911 0.85590 0.79913 0.77629 0.78740 1.20055 1.19782 1.20128 1.21523 0.94702 0.96950 0.96063 1.20057 0.92516 0.97095 1.01797 1.20901 1.00333 0.92254 1.03383 0.89434 0.90034 0.89575 0.82857 0.91709 0.91842 0.89520 0.90675 0.96131 0.94160 0.92506 0.85811 0.90043 0.88833 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.59 71.24 0.68 -0.93 16 2 C -0.06 -1.32 5.89 -19.78 -0.12 -1.43 16 3 C -0.14 -3.52 9.31 22.23 0.21 -3.32 16 4 C -0.05 -1.73 5.92 -19.56 -0.12 -1.85 16 5 C -0.11 -3.73 8.73 71.24 0.62 -3.11 16 6 C -0.19 -7.79 5.87 -20.15 -0.12 -7.90 16 7 C 0.39 19.29 6.16 28.03 0.17 19.46 16 8 O -0.49 -25.71 12.81 -2.95 -0.04 -25.75 16 9 C 0.00 0.03 2.06 -12.29 -0.03 0.00 16 10 H 0.04 2.25 6.52 -2.39 -0.02 2.23 16 11 C -0.11 -5.74 8.95 71.98 0.64 -5.09 16 12 C -0.53 -31.62 8.33 25.60 0.21 -31.40 16 13 H 0.04 2.81 7.03 -2.91 -0.02 2.79 16 14 C 0.02 1.16 5.30 84.66 0.45 1.61 16 15 N -0.91 -52.18 11.32 21.45 0.24 -51.93 16 16 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 17 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 20 C -0.07 -2.62 9.04 22.58 0.20 -2.42 16 21 C -0.11 -3.10 5.87 -19.91 -0.12 -3.22 16 22 C -0.11 -2.20 9.60 71.24 0.68 -1.52 16 23 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 0.92 8.08 -2.38 -0.02 0.90 16 25 H 0.09 0.98 5.92 -2.38 -0.01 0.97 16 26 H 0.15 2.92 8.05 -2.91 -0.02 2.90 16 27 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.06 2.47 5.88 -2.39 -0.01 2.45 16 29 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 30 H 0.07 4.02 6.07 -2.39 -0.01 4.01 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.12 4.59 6.36 -2.91 -0.02 4.57 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.33 5.92 -2.39 -0.01 1.31 16 37 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 Total: -1.00 -67.77 300.58 6.68 -61.09 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.06 Total: 10.28 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 3.39 Total: -41.11 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.24 Total: -51.93 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.04 Total: -25.75 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -67.77 6.68 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235399381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.098 kcal (2) G-P(sol) polarization free energy of solvation -67.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds