Wall clock time and date at job start Mon Mar 30 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37911 * 120.07764 * 2 1 4 4 C 1.38425 * 120.15404 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.84429 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47211 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47288 * 299.98089 * 5 4 3 8 8 C 1.53001 * 109.47039 * 59.98078 * 5 4 3 9 9 C 1.38464 * 120.31023 * 0.02562 * 4 3 2 10 10 C 1.37871 * 120.15623 * 0.29648 * 9 4 3 11 11 C 1.39721 * 120.07867 * 179.97438 * 2 1 3 12 12 C 1.47823 * 120.15571 * 359.97438 * 11 2 1 13 13 O 1.21765 * 119.99707 * 5.81932 * 12 11 2 14 14 C 1.41805 * 120.00139 * 185.82044 * 12 11 2 15 15 H 1.07995 * 119.99787 * 359.97438 * 14 12 11 16 16 C 1.40354 * 119.99974 * 180.02562 * 14 12 11 17 17 N 1.30527 * 119.99668 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99862 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47184 * 89.99959 * 18 16 14 20 20 H 1.48501 * 109.46933 * 209.99718 * 18 16 14 21 21 H 1.48502 * 109.47478 * 329.99678 * 18 16 14 22 22 H 1.08995 * 109.47364 * 96.65552 * 1 2 3 23 23 H 1.09004 * 109.47123 * 216.65127 * 1 2 3 24 24 H 1.09001 * 109.47235 * 336.65627 * 1 2 3 25 25 H 1.07994 * 119.92522 * 359.97438 * 3 2 1 26 26 H 1.09001 * 109.46647 * 60.00300 * 6 5 4 27 27 H 1.08998 * 109.47124 * 180.02562 * 6 5 4 28 28 H 1.09005 * 109.46888 * 300.00256 * 6 5 4 29 29 H 1.08998 * 109.46847 * 59.99782 * 7 5 4 30 30 H 1.08998 * 109.46998 * 179.97438 * 7 5 4 31 31 H 1.09001 * 109.47258 * 300.00120 * 7 5 4 32 32 H 1.09005 * 109.47326 * 59.99580 * 8 5 4 33 33 H 1.08998 * 109.47416 * 179.97438 * 8 5 4 34 34 H 1.09009 * 109.47247 * 299.99750 * 8 5 4 35 35 H 1.08003 * 119.92029 * 180.02562 * 9 4 3 36 36 H 1.07995 * 120.07548 * 179.72278 * 10 9 4 37 37 H 0.97008 * 119.99605 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1934 0.0000 4 6 3.5824 1.1953 0.0005 5 6 4.3306 2.5033 0.0011 6 6 5.8360 2.2299 0.0023 7 6 3.9586 3.3042 -1.2483 8 6 3.9568 3.3041 1.2502 9 6 4.2828 0.0008 0.0005 10 6 3.6048 -1.1996 -0.0062 11 6 2.2072 -1.2091 0.0005 12 6 1.4734 -2.4923 0.0017 13 8 0.2604 -2.4999 -0.1048 14 6 2.1819 -3.7142 0.1268 15 1 3.2578 -3.7073 0.2208 16 6 1.4851 -4.9326 0.1273 17 7 0.1849 -4.9408 0.0132 18 14 2.4186 -6.5422 0.2914 19 1 2.5433 -6.8980 1.7278 20 1 1.6824 -7.6163 -0.4225 21 1 3.7722 -6.3921 -0.3007 22 1 -0.3634 -0.1191 -1.0207 23 1 -0.3633 -0.8245 0.6135 24 1 -0.3634 0.9435 0.4072 25 1 1.6582 2.1287 -0.0004 26 1 6.1022 1.6594 -0.8876 27 1 6.3771 3.1760 0.0032 28 1 6.1009 1.6593 0.8925 29 1 2.8861 3.4990 -1.2490 30 1 4.4994 4.2506 -1.2476 31 1 4.2248 2.7338 -2.1382 32 1 4.2218 2.7335 2.1403 33 1 4.4983 4.2500 1.2509 34 1 2.8843 3.4989 1.2494 35 1 5.3628 0.0096 0.0014 36 1 4.1524 -2.1305 -0.0107 37 1 -0.2967 -5.7828 0.0139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259081913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:30 Heat of formation + Delta-G solvation = -39.908534 kcal Electronic energy + Delta-G solvation = -17691.661669 eV Core-core repulsion = 15011.958485 eV Total energy + Delta-G solvation = -2679.703184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42350 -37.13873 -35.24169 -32.79412 -31.69544 -29.67711 -27.90563 -27.15425 -26.65612 -25.51377 -22.97509 -20.86934 -19.96738 -18.28764 -16.66589 -15.89730 -15.13707 -14.70728 -14.15500 -14.12669 -13.75559 -13.26025 -13.13782 -12.84351 -12.50364 -12.31129 -12.11860 -11.75109 -11.62718 -11.61512 -11.40671 -11.20336 -11.11235 -10.93436 -10.83946 -10.58930 -10.42423 -10.33459 -10.26227 -9.83571 -8.97556 -7.99870 -7.68736 -7.32013 -6.26375 -4.89530 1.90588 2.16945 3.04627 3.12419 3.15669 4.00453 4.08259 4.64958 4.82611 4.93376 5.13456 5.48758 5.61206 5.62654 5.65921 5.67705 5.79601 5.83904 5.92616 5.94268 5.98513 6.04707 6.13234 6.17061 6.21264 6.40712 6.41103 6.51258 6.64393 6.76104 6.87106 7.15286 7.18937 7.22675 7.33923 7.55844 7.82030 8.05817 8.79416 8.85586 10.31147 10.53393 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033882 B = 0.005863 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.202202 B = 4774.757429 C = 5401.784328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.055 4.055 3 C -0.133 4.133 4 C -0.082 4.082 5 C -0.026 4.026 6 C -0.141 4.141 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.145 4.145 10 C -0.090 4.090 11 C -0.112 4.112 12 C 0.387 3.613 13 O -0.533 6.533 14 C -0.517 4.517 15 H 0.073 0.927 16 C 0.080 3.920 17 N -0.736 5.736 18 Si 0.905 3.095 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.063 0.937 23 H 0.101 0.899 24 H 0.035 0.965 25 H 0.109 0.891 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 11.044 0.299 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.056 4.056 3 C -0.151 4.151 4 C -0.082 4.082 5 C -0.026 4.026 6 C -0.198 4.198 7 C -0.194 4.194 8 C -0.194 4.194 9 C -0.163 4.163 10 C -0.108 4.108 11 C -0.113 4.113 12 C 0.283 3.717 13 O -0.424 6.424 14 C -0.548 4.548 15 H 0.091 0.909 16 C -0.143 4.143 17 N -0.365 5.365 18 Si 0.729 3.271 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.185 1.185 22 H 0.081 0.919 23 H 0.119 0.881 24 H 0.054 0.946 25 H 0.127 0.873 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.388 10.994 0.230 13.248 hybrid contribution 0.692 -0.779 0.064 1.044 sum 8.079 10.215 0.294 13.027 Atomic orbital electron populations 1.20959 0.91036 1.01524 1.03075 1.20185 0.96515 0.92080 0.96792 1.20685 0.93335 0.96966 1.04119 1.19671 0.93361 0.93668 1.01476 1.19427 0.94699 0.92879 0.95641 1.21935 0.94655 1.01137 1.02081 1.21872 1.01428 0.98983 0.97075 1.21875 1.01416 0.98988 0.97078 1.21013 0.99217 0.92152 1.03943 1.21503 0.94174 0.97492 0.97606 1.21685 0.94102 0.97299 0.98215 1.18134 0.88400 0.85819 0.79306 1.90421 1.15208 1.87933 1.48812 1.20950 0.95325 0.91783 1.46789 0.90898 1.25989 0.94627 1.00895 0.92757 1.69953 1.07740 1.27845 1.30926 0.86396 0.80579 0.80943 0.79174 1.19409 1.20174 1.18546 0.91873 0.88097 0.94575 0.87275 0.92318 0.92966 0.92315 0.92523 0.92913 0.92582 0.92578 0.92919 0.92519 0.86644 0.85606 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 8.74 36.00 0.31 -2.02 16 2 C -0.06 -1.20 5.92 -104.19 -0.62 -1.82 16 3 C -0.13 -2.42 8.32 -39.63 -0.33 -2.75 16 4 C -0.08 -1.35 4.77 -104.47 -0.50 -1.85 16 5 C -0.03 -0.34 0.85 -155.66 -0.13 -0.47 16 6 C -0.14 -1.59 7.13 37.16 0.26 -1.33 16 7 C -0.14 -1.60 8.29 37.16 0.31 -1.29 16 8 C -0.14 -1.60 8.28 37.16 0.31 -1.29 16 9 C -0.15 -2.55 8.96 -39.63 -0.35 -2.91 16 10 C -0.09 -1.87 9.43 -39.15 -0.37 -2.23 16 11 C -0.11 -2.68 5.88 -104.85 -0.62 -3.30 16 12 C 0.39 10.92 6.85 -34.30 -0.24 10.68 16 13 O -0.53 -16.39 11.89 5.13 0.06 -16.33 16 14 C -0.52 -14.23 8.85 -37.42 -0.33 -14.56 16 15 H 0.07 1.84 6.07 -52.49 -0.32 1.52 16 16 C 0.08 2.15 5.50 -17.31 -0.10 2.06 16 17 N -0.74 -20.99 11.73 55.57 0.65 -20.34 16 18 Si 0.91 19.27 29.56 -169.99 -5.03 14.24 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.10 2.47 5.85 -51.93 -0.30 2.16 16 24 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 25 H 0.11 1.74 7.07 -52.49 -0.37 1.37 16 26 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 29 H 0.06 0.67 7.37 -51.93 -0.38 0.29 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.67 7.37 -51.92 -0.38 0.29 16 35 H 0.12 1.71 5.87 -52.48 -0.31 1.41 16 36 H 0.13 2.54 6.25 -52.49 -0.33 2.21 16 37 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 LS Contribution 298.33 15.07 4.50 4.50 Total: -1.00 -30.70 298.33 -7.46 -38.17 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.26 Total: 2.84 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.38 Total: -23.08 kcal Atomic # 7 Polarization: -20.99 SS G_CDS: 0.65 Total: -20.34 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.06 Total: -16.33 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.70 -7.46 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259081913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.741 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds