Wall clock time and date at job start Mon Mar 30 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37911 * 120.07764 * 2 1 4 4 C 1.38425 * 120.15404 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.84429 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47211 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47288 * 299.98089 * 5 4 3 8 8 C 1.53001 * 109.47039 * 59.98078 * 5 4 3 9 9 C 1.38464 * 120.31023 * 0.02562 * 4 3 2 10 10 C 1.37871 * 120.15623 * 0.29648 * 9 4 3 11 11 C 1.39721 * 120.07867 * 179.97438 * 2 1 3 12 12 C 1.47823 * 120.15571 * 359.97438 * 11 2 1 13 13 O 1.21765 * 119.99707 * 5.81932 * 12 11 2 14 14 C 1.41805 * 120.00139 * 185.82044 * 12 11 2 15 15 H 1.07995 * 119.99787 * 359.97438 * 14 12 11 16 16 C 1.40354 * 119.99974 * 180.02562 * 14 12 11 17 17 N 1.30527 * 119.99668 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99862 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47184 * 89.99959 * 18 16 14 20 20 H 1.48501 * 109.46933 * 209.99718 * 18 16 14 21 21 H 1.48502 * 109.47478 * 329.99678 * 18 16 14 22 22 H 1.08995 * 109.47364 * 96.65552 * 1 2 3 23 23 H 1.09004 * 109.47123 * 216.65127 * 1 2 3 24 24 H 1.09001 * 109.47235 * 336.65627 * 1 2 3 25 25 H 1.07994 * 119.92522 * 359.97438 * 3 2 1 26 26 H 1.09001 * 109.46647 * 60.00300 * 6 5 4 27 27 H 1.08998 * 109.47124 * 180.02562 * 6 5 4 28 28 H 1.09005 * 109.46888 * 300.00256 * 6 5 4 29 29 H 1.08998 * 109.46847 * 59.99782 * 7 5 4 30 30 H 1.08998 * 109.46998 * 179.97438 * 7 5 4 31 31 H 1.09001 * 109.47258 * 300.00120 * 7 5 4 32 32 H 1.09005 * 109.47326 * 59.99580 * 8 5 4 33 33 H 1.08998 * 109.47416 * 179.97438 * 8 5 4 34 34 H 1.09009 * 109.47247 * 299.99750 * 8 5 4 35 35 H 1.08003 * 119.92029 * 180.02562 * 9 4 3 36 36 H 1.07995 * 120.07548 * 179.72278 * 10 9 4 37 37 H 0.97008 * 119.99605 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1934 0.0000 4 6 3.5824 1.1953 0.0005 5 6 4.3306 2.5033 0.0011 6 6 5.8360 2.2299 0.0023 7 6 3.9586 3.3042 -1.2483 8 6 3.9568 3.3041 1.2502 9 6 4.2828 0.0008 0.0005 10 6 3.6048 -1.1996 -0.0062 11 6 2.2072 -1.2091 0.0005 12 6 1.4734 -2.4923 0.0017 13 8 0.2604 -2.4999 -0.1048 14 6 2.1819 -3.7142 0.1268 15 1 3.2578 -3.7073 0.2208 16 6 1.4851 -4.9326 0.1273 17 7 0.1849 -4.9408 0.0132 18 14 2.4186 -6.5422 0.2914 19 1 2.5433 -6.8980 1.7278 20 1 1.6824 -7.6163 -0.4225 21 1 3.7722 -6.3921 -0.3007 22 1 -0.3634 -0.1191 -1.0207 23 1 -0.3633 -0.8245 0.6135 24 1 -0.3634 0.9435 0.4072 25 1 1.6582 2.1287 -0.0004 26 1 6.1022 1.6594 -0.8876 27 1 6.3771 3.1760 0.0032 28 1 6.1009 1.6593 0.8925 29 1 2.8861 3.4990 -1.2490 30 1 4.4994 4.2506 -1.2476 31 1 4.2248 2.7338 -2.1382 32 1 4.2218 2.7335 2.1403 33 1 4.4983 4.2500 1.2509 34 1 2.8843 3.4989 1.2494 35 1 5.3628 0.0096 0.0014 36 1 4.1524 -2.1305 -0.0107 37 1 -0.2967 -5.7828 0.0139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259081913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:30 Heat of formation + Delta-G solvation = -56.611625 kcal Electronic energy + Delta-G solvation = -17692.385969 eV Core-core repulsion = 15011.958485 eV Total energy + Delta-G solvation = -2680.427484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88958 -38.85499 -36.78678 -34.82931 -33.33054 -31.28210 -29.27912 -28.27961 -28.03944 -27.06981 -24.53782 -22.51248 -21.60997 -19.61613 -18.53856 -17.70230 -16.61018 -16.22056 -15.74121 -15.22089 -15.21121 -14.84770 -14.74921 -14.36900 -13.93258 -13.62790 -13.54998 -13.24933 -13.16018 -12.92062 -12.74153 -12.58831 -12.52149 -12.50092 -12.41509 -12.05118 -11.94795 -11.72121 -11.52701 -11.24870 -10.98613 -9.55484 -9.40033 -9.30312 -8.29249 -7.05302 0.28740 0.61427 1.36327 1.37031 1.52948 2.20088 2.25114 2.90156 3.71590 3.73387 3.88716 4.15794 4.19265 4.24073 4.31199 4.44477 4.54406 4.66487 4.77904 4.84625 4.88345 4.89054 4.96198 5.05937 5.08782 5.14136 5.17175 5.20599 5.25816 5.33044 5.43510 5.49701 5.50870 5.70844 5.79118 5.87448 6.01298 6.25712 6.71191 6.82216 8.26973 8.49772 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033882 B = 0.005863 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.202202 B = 4774.757429 C = 5401.784328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.075 4.075 3 C -0.129 4.129 4 C -0.065 4.065 5 C -0.027 4.027 6 C -0.142 4.142 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.139 4.139 10 C -0.096 4.096 11 C -0.157 4.157 12 C 0.363 3.637 13 O -0.577 6.577 14 C -0.548 4.548 15 H 0.089 0.911 16 C 0.025 3.975 17 N -0.787 5.787 18 Si 0.993 3.007 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.248 1.248 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.136 0.864 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 12.766 0.473 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.065 4.065 5 C -0.027 4.027 6 C -0.199 4.199 7 C -0.193 4.193 8 C -0.193 4.193 9 C -0.157 4.157 10 C -0.114 4.114 11 C -0.158 4.158 12 C 0.262 3.738 13 O -0.471 6.471 14 C -0.578 4.578 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.416 5.416 18 Si 0.811 3.189 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.171 1.171 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.154 0.846 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.352 12.736 0.405 16.417 hybrid contribution -0.191 -1.153 0.008 1.169 sum 10.160 11.582 0.413 15.413 Atomic orbital electron populations 1.20774 0.91545 1.01680 1.01691 1.20335 0.96554 0.92835 0.97820 1.20921 0.94272 0.96454 1.02990 1.20227 0.93024 0.95498 0.97787 1.19559 0.95359 0.90797 0.96978 1.21954 0.93371 1.02547 1.02041 1.21880 1.01669 0.99872 0.95916 1.21882 1.01671 0.99866 0.95906 1.21356 1.00849 0.91122 1.02346 1.21556 0.92942 0.99043 0.97890 1.21419 0.95514 0.96285 1.02612 1.18829 0.88342 0.88197 0.78404 1.90380 1.16865 1.89146 1.50715 1.21437 0.96328 0.92627 1.47457 0.89330 1.27211 0.95495 1.05275 0.91363 1.70092 1.10051 1.29522 1.31976 0.85090 0.79207 0.74920 0.79657 1.18319 1.19221 1.17094 0.93122 0.92099 0.90983 0.84600 0.92382 0.90580 0.92347 0.92831 0.90319 0.93286 0.93240 0.90337 0.92806 0.83304 0.85769 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.48 8.74 71.23 0.62 -3.86 16 2 C -0.08 -3.34 5.92 -19.58 -0.12 -3.45 16 3 C -0.13 -4.48 8.32 22.24 0.18 -4.29 16 4 C -0.07 -2.00 4.77 -19.77 -0.09 -2.09 16 5 C -0.03 -0.58 0.85 -52.93 -0.05 -0.63 16 6 C -0.14 -2.56 7.13 71.98 0.51 -2.05 16 7 C -0.14 -2.64 8.29 71.98 0.60 -2.04 16 8 C -0.14 -2.62 8.28 71.98 0.60 -2.03 16 9 C -0.14 -4.61 8.96 22.24 0.20 -4.41 16 10 C -0.10 -4.03 9.43 22.55 0.21 -3.82 16 11 C -0.16 -7.86 5.88 -20.01 -0.12 -7.98 16 12 C 0.36 21.77 6.85 25.69 0.18 21.95 16 13 O -0.58 -38.19 11.89 -4.56 -0.05 -38.25 16 14 C -0.55 -31.42 8.85 23.67 0.21 -31.21 16 15 H 0.09 4.59 6.07 -2.91 -0.02 4.57 16 16 C 0.03 1.39 5.50 85.40 0.47 1.86 16 17 N -0.79 -47.09 11.73 21.89 0.26 -46.84 16 18 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 22 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.06 3.21 5.85 -2.39 -0.01 3.20 16 24 H 0.07 2.57 8.04 -2.39 -0.02 2.55 16 25 H 0.14 3.96 7.07 -2.91 -0.02 3.94 16 26 H 0.06 1.07 7.50 -2.39 -0.02 1.05 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.07 7.51 -2.38 -0.02 1.05 16 29 H 0.05 1.07 7.37 -2.39 -0.02 1.06 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.07 7.37 -2.38 -0.02 1.05 16 35 H 0.15 3.91 5.87 -2.91 -0.02 3.89 16 36 H 0.12 5.08 6.25 -2.91 -0.02 5.07 16 37 H 0.28 15.04 8.29 -92.70 -0.77 14.27 16 Total: -1.00 -71.97 298.33 6.70 -65.27 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 1.06 Total: 21.79 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 3.41 Total: -44.05 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.26 Total: -46.84 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.05 Total: -38.25 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -71.97 6.70 -65.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259081913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.660 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds