Wall clock time and date at job start Mon Mar 30 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37911 * 120.09305 * 2 1 4 4 C 1.38377 * 120.17410 * 180.23277 * 3 2 1 5 5 C 1.38426 * 120.34993 * 359.79116 * 4 3 2 6 6 C 1.50699 * 119.91581 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46786 * 300.01981 * 6 5 4 8 8 C 1.53003 * 109.47368 * 60.01315 * 6 5 4 9 9 C 1.37866 * 120.17213 * 359.97438 * 5 4 3 10 10 C 1.39835 * 120.08616 * 179.78919 * 2 1 3 11 11 C 1.47164 * 120.17240 * 0.02581 * 10 2 1 12 12 O 1.21259 * 119.99575 * 353.71115 * 11 10 2 13 13 C 1.50701 * 120.00403 * 173.71146 * 11 10 2 14 14 C 1.50703 * 109.47363 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99496 * 0.02562 * 14 13 11 16 16 C 1.37869 * 120.00084 * 180.02562 * 14 13 11 17 17 N 1.31524 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00147 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46918 * 90.00116 * 18 16 14 20 20 H 1.48495 * 109.47375 * 209.99669 * 18 16 14 21 21 H 1.48492 * 109.47195 * 329.99931 * 18 16 14 22 22 H 1.08997 * 109.46751 * 263.57334 * 1 2 3 23 23 H 1.08997 * 109.46732 * 23.57083 * 1 2 3 24 24 H 1.08995 * 109.47182 * 143.57055 * 1 2 3 25 25 H 1.08000 * 119.90780 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.82756 * 179.76567 * 4 3 2 27 27 H 1.08997 * 109.47460 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47134 * 180.02562 * 7 6 5 29 29 H 1.09002 * 109.47051 * 299.99690 * 7 6 5 30 30 H 1.09000 * 109.47659 * 59.99779 * 7 6 5 31 31 H 1.08999 * 109.46377 * 60.00378 * 8 6 5 32 32 H 1.09001 * 109.47105 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47333 * 300.00694 * 8 6 5 34 34 H 1.07993 * 120.08644 * 179.97438 * 9 5 4 35 35 H 1.08995 * 109.47287 * 299.99899 * 13 11 10 36 36 H 1.09005 * 109.46759 * 59.99741 * 13 11 10 37 37 H 0.96998 * 119.99837 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1932 0.0000 4 6 3.5823 1.1952 -0.0049 5 6 4.2834 0.0016 -0.0054 6 6 5.7903 0.0152 -0.0113 7 6 6.2888 0.7391 -1.2636 8 6 6.2987 0.7430 1.2348 9 6 3.6067 -1.1995 -0.0006 10 6 2.2080 -1.2099 0.0045 11 6 1.4779 -2.4877 0.0086 12 8 0.2708 -2.4958 0.1232 13 6 2.2305 -3.7861 -0.1296 14 6 1.2578 -4.9367 -0.0952 15 1 0.2004 -4.7466 0.0152 16 6 1.7178 -6.2317 -0.2047 17 7 3.0055 -6.4630 -0.3397 18 14 0.5122 -7.6579 -0.1613 19 1 0.0596 -7.9655 -1.5419 20 1 1.1783 -8.8517 0.4186 21 1 -0.6595 -7.2904 0.6735 22 1 -0.3633 -0.1150 1.0212 23 1 -0.3633 0.9419 -0.4109 24 1 -0.3633 -0.8268 -0.6102 25 1 1.6585 2.1285 0.0004 26 1 4.1181 2.1329 -0.0087 27 1 6.1629 -1.0091 -0.0113 28 1 7.3788 0.7486 -1.2682 29 1 5.9267 0.2207 -2.1514 30 1 5.9163 1.7635 -1.2638 31 1 5.9435 0.2272 2.1269 32 1 7.3887 0.7532 1.2303 33 1 5.9261 1.7673 1.2347 34 1 4.1551 -2.1299 -0.0014 35 1 2.7701 -3.7943 -1.0766 36 1 2.9388 -3.8848 0.6931 37 1 3.3291 -7.3742 -0.4171 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259304361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:00 Heat of formation + Delta-G solvation = -39.370450 kcal Electronic energy + Delta-G solvation = -17389.342328 eV Core-core repulsion = 14709.662477 eV Total energy + Delta-G solvation = -2679.679850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83018 -37.88561 -35.37216 -33.02147 -31.59874 -30.92589 -28.77439 -27.16163 -26.57350 -24.16493 -22.87700 -21.90265 -20.27294 -18.29111 -16.45539 -15.89809 -15.65336 -15.08324 -14.53416 -14.26716 -13.98730 -13.90747 -13.39645 -13.36327 -13.03778 -12.80378 -12.31588 -12.04007 -11.91697 -11.68201 -11.60153 -11.41073 -11.13696 -11.02355 -10.78514 -10.71375 -10.59589 -10.52736 -9.97649 -9.25135 -8.63070 -8.42793 -8.31696 -8.23467 -6.05515 -4.05928 1.17994 1.61499 3.20417 3.34081 3.39568 3.46178 4.16244 4.44788 4.70248 4.81168 4.99452 5.13334 5.20383 5.23353 5.32438 5.41697 5.49804 5.57530 5.59459 5.77788 5.83926 5.94634 5.95820 6.06062 6.09861 6.20298 6.22533 6.27154 6.50423 6.57077 6.60779 6.79700 7.00402 7.21081 7.25197 7.35421 7.93937 8.23107 8.69182 9.03243 9.58965 11.06625 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.005913 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.490258 B = 4734.411656 C = 5696.636494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.040 4.040 3 C -0.140 4.140 4 C -0.093 4.093 5 C -0.102 4.102 6 C -0.057 4.057 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.063 4.063 10 C -0.157 4.157 11 C 0.389 3.611 12 O -0.456 6.456 13 C -0.020 4.020 14 C -0.515 4.515 15 H 0.073 0.927 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 15.780 0.396 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.158 4.158 4 C -0.111 4.111 5 C -0.102 4.102 6 C -0.075 4.075 7 C -0.200 4.200 8 C -0.200 4.200 9 C -0.081 4.081 10 C -0.158 4.158 11 C 0.268 3.732 12 O -0.333 6.333 13 C -0.057 4.057 14 C -0.553 4.553 15 H 0.091 0.909 16 C -0.144 4.144 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.066 15.627 0.441 16.434 hybrid contribution -0.338 -0.758 0.002 0.830 sum 4.728 14.870 0.443 15.609 Atomic orbital electron populations 1.21050 0.90656 1.02498 1.03341 1.20262 0.96588 0.92115 0.95051 1.20934 0.94095 0.97248 1.03485 1.21032 0.93846 0.97441 0.98791 1.19756 0.95229 0.93022 1.02169 1.20109 0.90910 1.00909 0.95566 1.21852 1.00550 1.00258 0.97355 1.21852 1.00518 1.00246 0.97393 1.21508 0.93223 0.98095 0.95267 1.20970 0.94487 0.95618 1.04746 1.23332 0.89086 0.90365 0.70446 1.90308 1.16988 1.89458 1.36512 1.19527 0.97225 0.89575 0.99374 1.21189 0.94375 0.90003 1.49760 0.90933 1.24998 0.95275 0.99042 0.95132 1.69959 1.12793 1.20720 1.50423 0.86474 0.81154 0.81425 0.78311 1.20607 1.21249 1.19698 0.91000 0.93004 0.88799 0.86205 0.86402 0.90066 0.92563 0.92385 0.92735 0.92425 0.92559 0.92735 0.84597 0.92945 0.92917 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.73 36.01 0.31 -1.59 16 2 C -0.04 -0.67 5.92 -104.14 -0.62 -1.29 16 3 C -0.14 -1.93 9.66 -39.65 -0.38 -2.32 16 4 C -0.09 -1.20 8.71 -39.46 -0.34 -1.54 16 5 C -0.10 -1.42 4.78 -104.69 -0.50 -1.92 16 6 C -0.06 -0.64 3.09 -91.77 -0.28 -0.93 16 7 C -0.14 -1.41 9.00 37.16 0.33 -1.08 16 8 C -0.14 -1.41 9.01 37.16 0.33 -1.07 16 9 C -0.06 -1.06 9.09 -39.11 -0.36 -1.41 16 10 C -0.16 -2.98 5.87 -105.06 -0.62 -3.60 16 11 C 0.39 8.87 7.04 -30.69 -0.22 8.66 16 12 O -0.46 -11.17 12.46 5.58 0.07 -11.10 16 13 C -0.02 -0.52 4.16 -29.03 -0.12 -0.64 16 14 C -0.52 -14.88 8.92 -34.44 -0.31 -15.19 16 15 H 0.07 2.15 6.75 -52.48 -0.35 1.80 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 18 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.67 8.04 -51.93 -0.42 0.25 16 24 H 0.09 1.73 5.87 -51.93 -0.30 1.43 16 25 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.12 1.21 7.08 -52.48 -0.37 0.84 16 27 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.50 7.38 -51.93 -0.38 0.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 34 H 0.14 2.30 6.87 -52.49 -0.36 1.94 16 35 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.05 1.36 7.91 -51.93 -0.41 0.95 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -30.70 306.40 -7.94 -38.64 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.49 Total: -1.15 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -2.86 Total: -22.40 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.70 -7.94 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259304361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.729 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds