Wall clock time and date at job start Mon Mar 30 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37911 * 120.09305 * 2 1 4 4 C 1.38377 * 120.17410 * 180.23277 * 3 2 1 5 5 C 1.38426 * 120.34993 * 359.79116 * 4 3 2 6 6 C 1.50699 * 119.91581 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46786 * 300.01981 * 6 5 4 8 8 C 1.53003 * 109.47368 * 60.01315 * 6 5 4 9 9 C 1.37866 * 120.17213 * 359.97438 * 5 4 3 10 10 C 1.39835 * 120.08616 * 179.78919 * 2 1 3 11 11 C 1.47164 * 120.17240 * 0.02581 * 10 2 1 12 12 O 1.21259 * 119.99575 * 353.71115 * 11 10 2 13 13 C 1.50701 * 120.00403 * 173.71146 * 11 10 2 14 14 C 1.50703 * 109.47363 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99496 * 0.02562 * 14 13 11 16 16 C 1.37869 * 120.00084 * 180.02562 * 14 13 11 17 17 N 1.31524 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00147 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46918 * 90.00116 * 18 16 14 20 20 H 1.48495 * 109.47375 * 209.99669 * 18 16 14 21 21 H 1.48492 * 109.47195 * 329.99931 * 18 16 14 22 22 H 1.08997 * 109.46751 * 263.57334 * 1 2 3 23 23 H 1.08997 * 109.46732 * 23.57083 * 1 2 3 24 24 H 1.08995 * 109.47182 * 143.57055 * 1 2 3 25 25 H 1.08000 * 119.90780 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.82756 * 179.76567 * 4 3 2 27 27 H 1.08997 * 109.47460 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47134 * 180.02562 * 7 6 5 29 29 H 1.09002 * 109.47051 * 299.99690 * 7 6 5 30 30 H 1.09000 * 109.47659 * 59.99779 * 7 6 5 31 31 H 1.08999 * 109.46377 * 60.00378 * 8 6 5 32 32 H 1.09001 * 109.47105 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47333 * 300.00694 * 8 6 5 34 34 H 1.07993 * 120.08644 * 179.97438 * 9 5 4 35 35 H 1.08995 * 109.47287 * 299.99899 * 13 11 10 36 36 H 1.09005 * 109.46759 * 59.99741 * 13 11 10 37 37 H 0.96998 * 119.99837 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1932 0.0000 4 6 3.5823 1.1952 -0.0049 5 6 4.2834 0.0016 -0.0054 6 6 5.7903 0.0152 -0.0113 7 6 6.2888 0.7391 -1.2636 8 6 6.2987 0.7430 1.2348 9 6 3.6067 -1.1995 -0.0006 10 6 2.2080 -1.2099 0.0045 11 6 1.4779 -2.4877 0.0086 12 8 0.2708 -2.4958 0.1232 13 6 2.2305 -3.7861 -0.1296 14 6 1.2578 -4.9367 -0.0952 15 1 0.2004 -4.7466 0.0152 16 6 1.7178 -6.2317 -0.2047 17 7 3.0055 -6.4630 -0.3397 18 14 0.5122 -7.6579 -0.1613 19 1 0.0596 -7.9655 -1.5419 20 1 1.1783 -8.8517 0.4186 21 1 -0.6595 -7.2904 0.6735 22 1 -0.3633 -0.1150 1.0212 23 1 -0.3633 0.9419 -0.4109 24 1 -0.3633 -0.8268 -0.6102 25 1 1.6585 2.1285 0.0004 26 1 4.1181 2.1329 -0.0087 27 1 6.1629 -1.0091 -0.0113 28 1 7.3788 0.7486 -1.2682 29 1 5.9267 0.2207 -2.1514 30 1 5.9163 1.7635 -1.2638 31 1 5.9435 0.2272 2.1269 32 1 7.3887 0.7532 1.2303 33 1 5.9261 1.7673 1.2347 34 1 4.1551 -2.1299 -0.0014 35 1 2.7701 -3.7943 -1.0766 36 1 2.9388 -3.8848 0.6931 37 1 3.3291 -7.3742 -0.4171 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259304361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:00 Heat of formation + Delta-G solvation = -55.205047 kcal Electronic energy + Delta-G solvation = -17390.028967 eV Core-core repulsion = 14709.662477 eV Total energy + Delta-G solvation = -2680.366490 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21026 -39.43252 -36.45417 -35.18123 -33.00472 -32.14299 -30.68553 -27.91404 -27.88449 -26.00685 -24.36152 -22.97981 -21.65120 -19.76974 -18.52906 -17.19805 -17.13667 -16.43921 -16.37860 -15.94899 -15.27075 -15.15301 -14.58531 -14.50318 -14.44486 -14.07562 -14.02938 -13.27957 -13.07988 -13.05961 -12.86573 -12.72381 -12.63108 -12.58478 -12.54425 -12.08223 -11.92802 -11.64900 -11.53972 -11.41796 -10.65827 -10.08329 -9.86594 -9.44606 -8.27580 -6.36727 -0.18600 0.42431 1.37153 1.38342 1.50857 1.62809 2.37776 2.83388 3.07033 3.37149 3.70182 3.86345 4.04219 4.14637 4.28911 4.37424 4.48569 4.53286 4.70376 4.78469 4.81233 4.87537 4.88066 4.99764 5.03703 5.04814 5.13876 5.19619 5.22647 5.32191 5.33622 5.44906 5.46183 5.65132 5.68539 5.71157 6.03287 6.09517 6.74065 6.87968 7.32371 8.84564 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.005913 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.490258 B = 4734.411656 C = 5696.636494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.130 4.130 4 C -0.076 4.076 5 C -0.097 4.097 6 C -0.059 4.059 7 C -0.140 4.140 8 C -0.140 4.140 9 C -0.078 4.078 10 C -0.187 4.187 11 C 0.389 3.611 12 O -0.482 6.482 13 C -0.016 4.016 14 C -0.545 4.545 15 H 0.057 0.943 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.965 3.035 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.272 1.272 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.158 0.842 26 H 0.160 0.840 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 18.316 0.400 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.148 4.148 4 C -0.094 4.094 5 C -0.097 4.097 6 C -0.077 4.077 7 C -0.197 4.197 8 C -0.197 4.197 9 C -0.097 4.097 10 C -0.188 4.188 11 C 0.270 3.730 12 O -0.361 6.361 13 C -0.053 4.053 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.197 1.197 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.176 0.824 26 H 0.177 0.823 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.816 18.168 0.442 19.082 hybrid contribution -0.475 -1.472 -0.005 1.547 sum 5.341 16.696 0.437 17.535 Atomic orbital electron populations 1.20978 0.90504 1.03066 1.02625 1.20442 0.96969 0.92347 0.95425 1.21320 0.94660 0.97273 1.01513 1.21507 0.93705 0.98383 0.95794 1.20065 0.96756 0.92302 1.00563 1.20183 0.89067 1.01012 0.97479 1.21839 1.01636 1.00586 0.95630 1.21837 1.01598 1.00560 0.95673 1.21482 0.92522 0.99072 0.96588 1.20600 0.95150 0.94382 1.08665 1.23223 0.88723 0.91270 0.69735 1.90288 1.17780 1.89974 1.38072 1.19373 0.96676 0.91099 0.98156 1.21442 0.94244 0.91748 1.50821 0.92474 1.25843 0.97191 1.01583 0.94336 1.70049 1.14312 1.21672 1.50437 0.85443 0.78764 0.78127 0.78711 1.19572 1.19818 1.19691 0.91514 0.89407 0.91975 0.82416 0.82277 0.91394 0.90956 0.93696 0.91093 0.93665 0.90953 0.91110 0.86272 0.94336 0.94151 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.73 71.24 0.62 -3.02 16 2 C -0.05 -1.68 5.92 -19.55 -0.12 -1.80 16 3 C -0.13 -3.12 9.66 22.23 0.21 -2.90 16 4 C -0.08 -1.65 8.71 22.35 0.19 -1.46 16 5 C -0.10 -2.53 4.78 -19.91 -0.10 -2.63 16 6 C -0.06 -1.22 3.09 -11.54 -0.04 -1.26 16 7 C -0.14 -2.34 9.00 71.98 0.65 -1.69 16 8 C -0.14 -2.32 9.01 71.98 0.65 -1.67 16 9 C -0.08 -2.71 9.09 22.58 0.21 -2.51 16 10 C -0.19 -7.33 5.87 -20.15 -0.12 -7.45 16 11 C 0.39 18.94 7.04 28.03 0.20 19.14 16 12 O -0.48 -25.10 12.46 -2.96 -0.04 -25.14 16 13 C -0.02 -0.89 4.16 29.10 0.12 -0.76 16 14 C -0.54 -33.04 8.92 25.60 0.23 -32.81 16 15 H 0.06 3.57 6.75 -2.91 -0.02 3.55 16 16 C 0.01 0.53 5.46 84.65 0.46 1.00 16 17 N -0.92 -55.68 13.29 21.45 0.28 -55.40 16 18 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 22 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.09 2.06 8.04 -2.39 -0.02 2.04 16 24 H 0.06 2.37 5.87 -2.39 -0.01 2.36 16 25 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 26 H 0.16 2.23 7.08 -2.91 -0.02 2.21 16 27 H 0.07 1.58 7.87 -2.39 -0.02 1.56 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.96 7.38 -2.39 -0.02 0.94 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.95 7.38 -2.39 -0.02 0.93 16 34 H 0.12 4.39 6.87 -2.91 -0.02 4.37 16 35 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.04 2.26 7.91 -2.38 -0.02 2.24 16 37 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -69.38 306.40 6.49 -62.89 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.04 Total: 9.38 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.18 Total: -39.84 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.28 Total: -55.40 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.04 Total: -25.14 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -69.38 6.49 -62.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259304361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.684 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds