Wall clock time and date at job start Mon Mar 30 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37738 * 120.01113 * 2 1 4 4 C 1.38886 * 120.78765 * 180.56035 * 3 2 1 5 5 C 1.39280 * 118.87065 * 359.39098 * 4 3 2 6 6 C 1.37935 * 120.24650 * 0.13385 * 5 4 3 7 7 C 1.38285 * 120.34756 * 0.09499 * 6 5 4 8 8 C 1.50697 * 120.11704 * 179.86891 * 7 6 5 9 9 C 1.52997 * 109.47466 * 265.00193 * 8 7 6 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 O 1.36131 * 111.24124 * 179.03416 * 4 3 2 20 20 C 1.43775 * 109.25874 * 18.86286 * 19 4 3 21 21 C 1.51654 * 132.17403 * 0.47976 * 3 2 1 22 22 H 1.09000 * 109.46928 * 270.28941 * 1 2 3 23 23 H 1.08994 * 109.47419 * 30.29825 * 1 2 3 24 24 H 1.09006 * 109.47038 * 150.29774 * 1 2 3 25 25 H 1.08007 * 119.87775 * 180.15795 * 5 4 3 26 26 H 1.07991 * 119.82644 * 180.11740 * 6 5 4 27 27 H 1.09002 * 109.47120 * 144.99946 * 8 7 6 28 28 H 1.08998 * 109.46862 * 25.00748 * 8 7 6 29 29 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 32 32 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 33 33 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 34 34 H 1.09001 * 110.75016 * 90.65514 * 20 19 4 35 35 H 1.08999 * 110.74742 * 213.82056 * 20 19 4 36 36 H 1.08995 * 110.93651 * 46.41679 * 21 3 2 37 37 H 1.08995 * 110.96650 * 282.74428 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1927 0.0000 4 6 3.5846 1.2116 -0.0117 5 6 4.2736 0.0011 -0.0105 6 6 3.5818 -1.1922 -0.0006 7 6 2.1990 -1.1980 0.0061 8 6 1.4484 -2.5048 0.0139 9 6 1.0784 -2.8890 -1.4201 10 6 0.3158 -4.2153 -1.4121 11 6 -0.0481 -4.5940 -2.8247 12 1 0.2358 -3.9526 -3.6459 13 6 -0.7434 -5.7594 -3.0686 14 7 -1.0886 -6.5407 -2.0686 15 14 -1.1951 -6.2285 -4.8194 16 1 -0.1059 -7.0478 -5.4090 17 1 -2.4560 -7.0128 -4.8121 18 1 -1.3824 -4.9977 -5.6290 19 8 4.0604 2.4869 -0.0308 20 6 3.0264 3.3854 0.4058 21 6 1.7320 2.6365 0.0094 22 1 -0.3633 0.0052 1.0277 23 1 -0.3634 0.8872 -0.5184 24 1 -0.3633 -0.8927 -0.5092 25 1 5.3537 -0.0032 -0.0168 26 1 4.1229 -2.1267 0.0022 27 1 0.5404 -2.3987 0.6074 28 1 2.0772 -3.2823 0.4477 29 1 1.9865 -2.9950 -2.0137 30 1 0.4496 -2.1113 -1.8538 31 1 0.9442 -4.9931 -0.9783 32 1 -0.5922 -4.1088 -0.8187 33 1 -1.5775 -7.3608 -2.2402 34 1 3.0726 3.5321 1.4849 35 1 3.0987 4.3399 -0.1156 36 1 0.9501 2.7895 0.7532 37 1 1.3917 2.9433 -0.9796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259579585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:22 Heat of formation + Delta-G solvation = -36.467935 kcal Electronic energy + Delta-G solvation = -17192.765179 eV Core-core repulsion = 14513.211191 eV Total energy + Delta-G solvation = -2679.553988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.08970 -38.13877 -34.43576 -33.27690 -32.47116 -30.73168 -29.54738 -27.10946 -26.10590 -23.61995 -23.14515 -20.89162 -20.77664 -19.91748 -17.11949 -16.71500 -16.29520 -16.10255 -15.03555 -14.47379 -14.16937 -13.67326 -13.57949 -13.26125 -13.04708 -12.75644 -12.44539 -12.26014 -12.06459 -11.95959 -11.68053 -11.28809 -11.25265 -10.89521 -10.83138 -10.55951 -10.44152 -10.30840 -9.62330 -9.28195 -9.05492 -8.54290 -8.32195 -7.79529 -5.97471 -3.99510 1.42030 1.51384 3.26211 3.33517 3.39656 3.43347 3.79375 4.37603 4.48233 4.54031 4.81962 4.92385 5.14901 5.21707 5.28309 5.38281 5.42379 5.53198 5.59607 5.69055 5.76690 5.79473 5.89697 6.05162 6.13961 6.27346 6.37454 6.47333 6.52636 6.68534 6.76568 6.96305 6.98313 7.16605 7.30975 7.71404 7.85996 8.03369 8.46506 9.07872 9.64484 11.13792 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039869 B = 0.004192 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.129176 B = 6677.114254 C = 6804.056945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.033 4.033 3 C -0.176 4.176 4 C 0.089 3.911 5 C -0.141 4.141 6 C -0.083 4.083 7 C -0.092 4.092 8 C -0.080 4.080 9 C -0.104 4.104 10 C 0.020 3.980 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 O -0.310 6.310 20 C 0.053 3.947 21 C -0.107 4.107 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.131 0.869 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 17.455 6.812 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.177 4.177 4 C 0.045 3.955 5 C -0.160 4.160 6 C -0.101 4.101 7 C -0.092 4.092 8 C -0.118 4.118 9 C -0.141 4.141 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.224 6.224 20 C -0.023 4.023 21 C -0.144 4.144 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.141 0.859 26 H 0.149 0.851 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.679 17.390 6.791 19.828 hybrid contribution -0.363 -0.259 -0.947 1.047 sum 6.316 17.131 5.844 19.170 Atomic orbital electron populations 1.20913 0.91033 1.03657 1.02312 1.18991 0.96009 0.90529 0.97787 1.20499 0.93493 0.94739 1.08933 1.19461 0.91936 0.85387 0.98745 1.20170 0.99778 0.88937 1.07107 1.20813 0.93713 0.97025 0.98540 1.19964 0.93534 0.95146 1.00572 1.20724 0.99097 0.91985 0.99945 1.21646 0.99963 0.99947 0.92570 1.19124 0.94943 0.90695 0.96902 1.21279 1.35264 1.06104 0.93123 0.92761 1.25017 0.96004 0.96528 0.96884 1.69961 1.39826 1.13196 1.30608 0.86624 0.77876 0.78526 0.85163 1.20682 1.21245 1.19900 1.86789 1.38993 1.13943 1.82699 1.23768 0.85039 0.93303 1.00147 1.21721 0.98267 0.91203 1.03183 0.91225 0.91968 0.89708 0.85887 0.85096 0.91294 0.91423 0.93326 0.93259 0.96604 0.96613 0.93054 0.90892 0.87978 0.89361 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.12 36.01 0.33 -1.30 16 2 C -0.03 -0.49 5.87 -104.76 -0.61 -1.10 16 3 C -0.18 -2.43 6.07 -104.09 -0.63 -3.07 16 4 C 0.09 1.29 7.04 -38.95 -0.27 1.02 16 5 C -0.14 -1.98 10.06 -39.30 -0.40 -2.38 16 6 C -0.08 -1.21 9.66 -39.67 -0.38 -1.59 16 7 C -0.09 -1.45 5.14 -104.56 -0.54 -1.98 16 8 C -0.08 -1.37 4.65 -27.89 -0.13 -1.50 16 9 C -0.10 -2.15 4.94 -26.73 -0.13 -2.28 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 O -0.31 -4.15 11.10 -20.16 -0.22 -4.37 16 20 C 0.05 0.49 8.01 38.06 0.30 0.80 16 21 C -0.11 -1.08 6.64 -26.51 -0.18 -1.26 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 24 H 0.08 1.26 5.43 -51.93 -0.28 0.98 16 25 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 26 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.07 1.15 7.02 -51.93 -0.36 0.78 16 28 H 0.07 1.12 8.05 -51.93 -0.42 0.71 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 6.88 -51.93 -0.36 0.66 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -31.50 304.47 -8.71 -40.21 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.60 Total: -3.03 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.19 Total: -27.88 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.22 Total: -4.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.50 -8.71 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259579585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.743 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds