Wall clock time and date at job start Mon Mar 30 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37738 * 120.01113 * 2 1 4 4 C 1.38886 * 120.78765 * 180.56035 * 3 2 1 5 5 C 1.39280 * 118.87065 * 359.39098 * 4 3 2 6 6 C 1.37935 * 120.24650 * 0.13385 * 5 4 3 7 7 C 1.38285 * 120.34756 * 0.09499 * 6 5 4 8 8 C 1.50697 * 120.11704 * 179.86891 * 7 6 5 9 9 C 1.52997 * 109.47466 * 265.00193 * 8 7 6 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 O 1.36131 * 111.24124 * 179.03416 * 4 3 2 20 20 C 1.43775 * 109.25874 * 18.86286 * 19 4 3 21 21 C 1.51654 * 132.17403 * 0.47976 * 3 2 1 22 22 H 1.09000 * 109.46928 * 270.28941 * 1 2 3 23 23 H 1.08994 * 109.47419 * 30.29825 * 1 2 3 24 24 H 1.09006 * 109.47038 * 150.29774 * 1 2 3 25 25 H 1.08007 * 119.87775 * 180.15795 * 5 4 3 26 26 H 1.07991 * 119.82644 * 180.11740 * 6 5 4 27 27 H 1.09002 * 109.47120 * 144.99946 * 8 7 6 28 28 H 1.08998 * 109.46862 * 25.00748 * 8 7 6 29 29 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 32 32 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 33 33 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 34 34 H 1.09001 * 110.75016 * 90.65514 * 20 19 4 35 35 H 1.08999 * 110.74742 * 213.82056 * 20 19 4 36 36 H 1.08995 * 110.93651 * 46.41679 * 21 3 2 37 37 H 1.08995 * 110.96650 * 282.74428 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1927 0.0000 4 6 3.5846 1.2116 -0.0117 5 6 4.2736 0.0011 -0.0105 6 6 3.5818 -1.1922 -0.0006 7 6 2.1990 -1.1980 0.0061 8 6 1.4484 -2.5048 0.0139 9 6 1.0784 -2.8890 -1.4201 10 6 0.3158 -4.2153 -1.4121 11 6 -0.0481 -4.5940 -2.8247 12 1 0.2358 -3.9526 -3.6459 13 6 -0.7434 -5.7594 -3.0686 14 7 -1.0886 -6.5407 -2.0686 15 14 -1.1951 -6.2285 -4.8194 16 1 -0.1059 -7.0478 -5.4090 17 1 -2.4560 -7.0128 -4.8121 18 1 -1.3824 -4.9977 -5.6290 19 8 4.0604 2.4869 -0.0308 20 6 3.0264 3.3854 0.4058 21 6 1.7320 2.6365 0.0094 22 1 -0.3633 0.0052 1.0277 23 1 -0.3634 0.8872 -0.5184 24 1 -0.3633 -0.8927 -0.5092 25 1 5.3537 -0.0032 -0.0168 26 1 4.1229 -2.1267 0.0022 27 1 0.5404 -2.3987 0.6074 28 1 2.0772 -3.2823 0.4477 29 1 1.9865 -2.9950 -2.0137 30 1 0.4496 -2.1113 -1.8538 31 1 0.9442 -4.9931 -0.9783 32 1 -0.5922 -4.1088 -0.8187 33 1 -1.5775 -7.3608 -2.2402 34 1 3.0726 3.5321 1.4849 35 1 3.0987 4.3399 -0.1156 36 1 0.9501 2.7895 0.7532 37 1 1.3917 2.9433 -0.9796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259579585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:21 Heat of formation + Delta-G solvation = -53.149947 kcal Electronic energy + Delta-G solvation = -17193.488566 eV Core-core repulsion = 14513.211191 eV Total energy + Delta-G solvation = -2680.277374 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06727 -39.24545 -36.18957 -34.36859 -34.22156 -31.98821 -30.80329 -28.50456 -27.45197 -25.26054 -24.12644 -22.39389 -21.82551 -21.40703 -18.45843 -18.05572 -17.73722 -17.01116 -16.58101 -16.19398 -15.55422 -14.75971 -14.65864 -14.57522 -14.30096 -14.02575 -13.80734 -13.65813 -13.27401 -13.09588 -13.00639 -12.70482 -12.58983 -12.54655 -12.43153 -12.20773 -11.74749 -11.48997 -11.38085 -11.27337 -11.02171 -10.53748 -9.59053 -8.91602 -8.18639 -6.29665 0.35122 0.39350 1.40110 1.41233 1.52455 2.35982 2.41680 2.70788 3.14075 3.50283 3.70041 3.92323 3.98881 4.17320 4.20466 4.29946 4.41016 4.54173 4.58752 4.61409 4.70540 4.78271 4.81147 4.90502 4.96332 5.01190 5.02886 5.19502 5.25828 5.33198 5.38373 5.50557 5.55615 5.70368 5.71523 5.84309 5.89287 6.25907 6.29618 6.87172 7.39385 8.92804 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039869 B = 0.004192 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.129176 B = 6677.114254 C = 6804.056945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.044 4.044 3 C -0.184 4.184 4 C 0.080 3.920 5 C -0.150 4.150 6 C -0.088 4.088 7 C -0.113 4.113 8 C -0.068 4.068 9 C -0.088 4.088 10 C 0.024 3.976 11 C -0.544 4.544 12 H 0.056 0.944 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 O -0.325 6.325 20 C 0.048 3.952 21 C -0.105 4.105 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.049 0.951 31 H -0.008 1.008 32 H -0.005 1.005 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 19.302 6.270 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.044 4.044 3 C -0.185 4.185 4 C 0.035 3.965 5 C -0.169 4.169 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.105 4.105 9 C -0.125 4.125 10 C -0.013 4.013 11 C -0.582 4.582 12 H 0.074 0.926 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.787 3.213 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.189 1.189 19 O -0.240 6.240 20 C -0.026 4.026 21 C -0.141 4.141 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.011 0.989 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.803 19.256 6.254 21.358 hybrid contribution -0.375 -0.767 -0.734 1.126 sum 6.429 18.489 5.520 20.338 Atomic orbital electron populations 1.20899 0.90217 1.03346 1.03154 1.19181 0.96760 0.90680 0.97747 1.20873 0.93534 0.96196 1.07894 1.19728 0.92456 0.86020 0.98278 1.20388 1.00739 0.88830 1.06913 1.20963 0.93444 0.97882 0.98349 1.19861 0.94045 0.94627 1.02813 1.20496 0.99476 0.93207 0.97334 1.21400 0.98860 0.97110 0.95172 1.19029 0.94193 0.92690 0.95360 1.21710 1.35599 1.06585 0.94310 0.92598 1.25944 0.95758 0.96407 1.01541 1.70087 1.40441 1.13697 1.33044 0.85492 0.77794 0.78479 0.79562 1.19816 1.20559 1.18896 1.86770 1.40632 1.13791 1.82810 1.24110 0.83472 0.93462 1.01567 1.21843 0.99238 0.88673 1.04390 0.89828 0.90263 0.91902 0.84274 0.84121 0.91169 0.91381 0.93766 0.93256 0.98917 0.98659 0.92758 0.89395 0.85149 0.87354 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.12 71.24 0.65 -2.39 16 2 C -0.04 -1.25 5.87 -19.95 -0.12 -1.37 16 3 C -0.18 -4.77 6.07 -19.52 -0.12 -4.89 16 4 C 0.08 2.19 7.04 22.68 0.16 2.35 16 5 C -0.15 -4.07 10.06 22.45 0.23 -3.84 16 6 C -0.09 -2.54 9.66 22.21 0.21 -2.32 16 7 C -0.11 -3.54 5.14 -19.83 -0.10 -3.64 16 8 C -0.07 -2.36 4.65 29.85 0.14 -2.22 16 9 C -0.09 -3.72 4.94 30.59 0.15 -3.57 16 10 C 0.02 1.30 4.97 29.85 0.15 1.45 16 11 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 12 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 13 C 0.00 0.07 5.46 84.66 0.46 0.53 16 14 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 15 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 19 O -0.33 -8.01 11.10 -95.05 -1.06 -9.07 16 20 C 0.05 0.74 8.01 72.56 0.58 1.32 16 21 C -0.10 -1.81 6.64 30.73 0.20 -1.61 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.08 1.70 7.79 -2.39 -0.02 1.68 16 24 H 0.06 1.87 5.43 -2.38 -0.01 1.86 16 25 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 26 H 0.14 3.60 8.06 -2.92 -0.02 3.58 16 27 H 0.07 2.39 7.02 -2.39 -0.02 2.37 16 28 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 2.06 6.88 -2.39 -0.02 2.05 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -67.82 304.47 5.13 -62.70 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.04 Total: 8.03 kcal Atomic # 6 Polarization: -54.39 SS G_CDS: 2.83 Total: -51.56 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.89 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.06 Total: -9.07 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.82 5.13 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259579585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.546 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds