Wall clock time and date at job start Mon Mar 30 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47008 * 2 1 4 4 C 1.38259 * 120.03289 * 90.00518 * 3 2 1 5 5 C 1.38105 * 119.93550 * 180.02562 * 4 3 2 6 6 C 1.38495 * 120.21672 * 359.97438 * 5 4 3 7 7 C 1.38223 * 119.84666 * 0.02562 * 6 5 4 8 8 C 1.38103 * 120.03548 * 270.02054 * 3 2 1 9 9 C 1.51371 * 109.75733 * 180.02562 * 7 6 5 10 10 H 1.09000 * 110.30324 * 223.88600 * 9 7 6 11 11 C 1.50698 * 110.30563 * 101.72906 * 9 7 6 12 12 H 1.08000 * 119.99843 * 299.03634 * 11 9 7 13 13 C 1.37880 * 120.00162 * 119.04120 * 11 9 7 14 14 N 1.31507 * 120.00327 * 173.13484 * 13 11 9 15 15 Si 1.86800 * 119.99502 * 353.12764 * 13 11 9 16 16 H 1.48506 * 109.47103 * 86.08561 * 15 13 11 17 17 H 1.48505 * 109.46936 * 206.07789 * 15 13 11 18 18 H 1.48495 * 109.47538 * 326.08355 * 15 13 11 19 19 C 1.54348 * 105.17164 * 342.80388 * 9 7 6 20 20 H 1.08998 * 110.99361 * 268.05128 * 19 9 7 21 21 O 1.42895 * 110.82402 * 144.57256 * 19 9 7 22 22 C 1.42906 * 113.99970 * 155.57675 * 21 19 9 23 23 C 1.51372 * 130.39445 * 179.97438 * 6 5 4 24 24 H 1.09002 * 109.46665 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47113 * 299.99854 * 1 2 3 26 26 H 1.09002 * 109.47174 * 60.00000 * 1 2 3 27 27 H 1.09000 * 109.47113 * 240.00146 * 2 1 3 28 28 H 1.09002 * 109.47174 * 120.00000 * 2 1 3 29 29 H 1.08000 * 120.03072 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.88979 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.88818 * 359.97438 * 8 3 2 32 32 H 0.96998 * 120.00046 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47278 * 180.02562 * 22 21 19 34 34 H 1.09003 * 109.47006 * 300.00345 * 22 21 19 35 35 H 1.09002 * 109.46752 * 60.00147 * 22 21 19 36 36 H 1.09002 * 110.29663 * 78.26754 * 23 6 5 37 37 H 1.08997 * 110.38366 * 316.16272 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0732 1.1970 5 6 2.7229 3.3754 1.1946 6 6 2.9545 4.0307 -0.0033 7 6 2.7238 3.3785 -1.2000 8 6 2.2623 2.0727 -1.1956 9 6 3.0500 4.2996 -2.3560 10 1 2.2757 4.2358 -3.1206 11 6 4.3940 3.9493 -2.9407 12 1 5.2818 4.0111 -2.3288 13 6 4.4903 3.5499 -4.2568 14 7 5.6723 3.3745 -4.8060 15 14 2.9418 3.2577 -5.2598 16 1 2.4880 4.5404 -5.8549 17 1 3.2303 2.2841 -6.3435 18 1 1.8761 2.7163 -4.3788 19 6 3.0844 5.7170 -1.7458 20 1 2.1081 6.1965 -1.8168 21 8 4.0877 6.5166 -2.3750 22 6 3.8454 7.9227 -2.2942 23 6 3.4499 5.4353 -0.2734 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0831 1.5651 2.1329 30 1 2.9025 3.8844 2.1300 31 1 2.0820 1.5623 -2.1302 32 1 5.7401 3.0932 -5.7318 33 1 4.6510 8.4595 -2.7952 34 1 2.8973 8.1564 -2.7785 35 1 3.8030 8.2245 -1.2477 36 1 4.5299 5.4882 -0.1359 37 1 2.9503 6.1470 0.3838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:48 Heat of formation + Delta-G solvation = -30.642370 kcal Electronic energy + Delta-G solvation = -17991.686201 eV Core-core repulsion = 15312.384828 eV Total energy + Delta-G solvation = -2679.301372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64258 -37.29517 -34.97498 -32.91958 -31.78307 -30.32795 -28.05135 -27.11879 -25.74630 -23.79539 -22.81042 -21.57781 -19.82960 -19.06232 -17.20923 -15.73020 -15.36248 -15.17040 -14.74476 -14.27386 -13.99461 -13.70209 -13.51067 -13.07067 -12.86631 -12.61754 -12.39829 -12.27102 -11.61670 -11.49621 -11.41272 -11.01794 -10.95704 -10.82596 -10.74600 -10.29051 -10.19097 -9.86479 -9.57779 -9.36792 -8.70222 -8.50105 -8.04395 -7.60418 -6.02886 -3.97972 1.98497 2.12572 3.30115 3.36926 3.37594 4.39474 4.44263 4.57585 5.03517 5.14715 5.22694 5.31988 5.54449 5.56116 5.63482 5.65565 5.75018 5.81683 5.83664 5.94504 6.02833 6.07122 6.09716 6.14772 6.20431 6.34875 6.35088 6.49722 6.61821 6.73621 6.86418 6.98110 7.05083 7.23328 7.47924 7.61422 7.72831 8.14270 8.57140 9.05467 9.58468 11.10594 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.009572 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.735628 B = 2924.465722 C = 3998.909990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.141 4.141 5 C -0.108 4.108 6 C -0.111 4.111 7 C -0.044 4.044 8 C -0.106 4.106 9 C 0.046 3.954 10 H 0.049 0.951 11 C -0.470 4.470 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.895 5.895 15 Si 0.870 3.130 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.089 3.911 20 H 0.051 0.949 21 O -0.336 6.336 22 C 0.025 3.975 23 C -0.093 4.093 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.263 0.737 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.085 0.915 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 0.346 9.153 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.159 4.159 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.045 4.045 8 C -0.125 4.125 9 C 0.027 3.973 10 H 0.067 0.933 11 C -0.508 4.508 12 H 0.095 0.905 13 C -0.126 4.126 14 N -0.532 5.532 15 Si 0.698 3.302 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.191 1.191 19 C 0.030 3.970 20 H 0.069 0.931 21 O -0.254 6.254 22 C -0.072 4.072 23 C -0.131 4.131 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.871 0.209 8.868 12.545 hybrid contribution -0.852 -0.002 -0.438 0.958 sum -9.723 0.207 8.430 12.870 Atomic orbital electron populations 1.21741 0.95319 1.01034 1.02087 1.20469 0.95687 0.93312 1.02351 1.19635 1.00451 0.95635 0.93152 1.20607 1.03549 0.94898 0.96807 1.20425 1.01049 0.94722 0.96463 1.20411 1.00817 0.96515 0.93375 1.21186 0.92374 0.94306 0.96603 1.20436 1.00840 0.94170 0.97015 1.18885 0.98686 0.87769 0.91974 0.93294 1.20442 0.90749 1.43600 0.95974 0.90502 1.25016 0.95544 0.94853 0.97233 1.69887 1.22832 1.47035 1.13455 0.86968 0.84498 0.78553 0.80179 1.20140 1.21484 1.19133 1.22747 0.89181 0.94175 0.90905 0.93137 1.88330 1.46053 1.13944 1.77043 1.22723 1.00499 0.84803 0.99222 1.21437 1.01693 0.92571 0.97367 0.92922 0.92801 0.92596 0.91258 0.91551 0.87063 0.87346 0.86939 0.92691 0.90379 0.95123 0.95256 0.89685 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 37.16 0.37 -1.37 16 2 C -0.08 -1.11 6.07 -27.88 -0.17 -1.28 16 3 C -0.09 -1.53 5.13 -104.67 -0.54 -2.07 16 4 C -0.14 -2.29 9.70 -39.62 -0.38 -2.67 16 5 C -0.11 -1.87 10.04 -39.54 -0.40 -2.26 16 6 C -0.11 -2.20 6.14 -104.20 -0.64 -2.84 16 7 C -0.04 -0.97 5.43 -104.20 -0.57 -1.54 16 8 C -0.11 -2.17 9.70 -39.54 -0.38 -2.56 16 9 C 0.05 1.10 2.72 -91.89 -0.25 0.85 16 10 H 0.05 1.18 4.90 -51.93 -0.25 0.93 16 11 C -0.47 -13.31 7.89 -34.44 -0.27 -13.58 16 12 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 14 N -0.89 -27.52 13.96 55.43 0.77 -26.74 16 15 Si 0.87 21.54 26.97 -169.99 -4.58 16.96 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.27 -6.25 6.79 56.52 0.38 -5.86 16 19 C 0.09 1.85 3.35 -25.34 -0.08 1.77 16 20 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 21 O -0.34 -7.47 9.29 -35.23 -0.33 -7.80 16 22 C 0.03 0.41 10.88 101.05 1.10 1.51 16 23 C -0.09 -1.77 6.51 -26.87 -0.17 -1.94 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 28 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.11 2.31 8.06 -52.48 -0.42 1.88 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.46 8.11 -51.93 -0.42 0.03 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -31.14 304.70 -7.76 -38.90 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.73 Total: -0.01 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -2.49 Total: -25.90 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.33 Total: -7.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.58 Total: 16.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.14 -7.76 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.257 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds