Wall clock time and date at job start Mon Mar 30 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47008 * 2 1 4 4 C 1.38259 * 120.03289 * 90.00518 * 3 2 1 5 5 C 1.38105 * 119.93550 * 180.02562 * 4 3 2 6 6 C 1.38495 * 120.21672 * 359.97438 * 5 4 3 7 7 C 1.38223 * 119.84666 * 0.02562 * 6 5 4 8 8 C 1.38103 * 120.03548 * 270.02054 * 3 2 1 9 9 C 1.51371 * 109.75733 * 180.02562 * 7 6 5 10 10 H 1.09000 * 110.30324 * 223.88600 * 9 7 6 11 11 C 1.50698 * 110.30563 * 101.72906 * 9 7 6 12 12 H 1.08000 * 119.99843 * 299.03634 * 11 9 7 13 13 C 1.37880 * 120.00162 * 119.04120 * 11 9 7 14 14 N 1.31507 * 120.00327 * 173.13484 * 13 11 9 15 15 Si 1.86800 * 119.99502 * 353.12764 * 13 11 9 16 16 H 1.48506 * 109.47103 * 86.08561 * 15 13 11 17 17 H 1.48505 * 109.46936 * 206.07789 * 15 13 11 18 18 H 1.48495 * 109.47538 * 326.08355 * 15 13 11 19 19 C 1.54348 * 105.17164 * 342.80388 * 9 7 6 20 20 H 1.08998 * 110.99361 * 268.05128 * 19 9 7 21 21 O 1.42895 * 110.82402 * 144.57256 * 19 9 7 22 22 C 1.42906 * 113.99970 * 155.57675 * 21 19 9 23 23 C 1.51372 * 130.39445 * 179.97438 * 6 5 4 24 24 H 1.09002 * 109.46665 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47113 * 299.99854 * 1 2 3 26 26 H 1.09002 * 109.47174 * 60.00000 * 1 2 3 27 27 H 1.09000 * 109.47113 * 240.00146 * 2 1 3 28 28 H 1.09002 * 109.47174 * 120.00000 * 2 1 3 29 29 H 1.08000 * 120.03072 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.88979 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.88818 * 359.97438 * 8 3 2 32 32 H 0.96998 * 120.00046 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47278 * 180.02562 * 22 21 19 34 34 H 1.09003 * 109.47006 * 300.00345 * 22 21 19 35 35 H 1.09002 * 109.46752 * 60.00147 * 22 21 19 36 36 H 1.09002 * 110.29663 * 78.26754 * 23 6 5 37 37 H 1.08997 * 110.38366 * 316.16272 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0732 1.1970 5 6 2.7229 3.3754 1.1946 6 6 2.9545 4.0307 -0.0033 7 6 2.7238 3.3785 -1.2000 8 6 2.2623 2.0727 -1.1956 9 6 3.0500 4.2996 -2.3560 10 1 2.2757 4.2358 -3.1206 11 6 4.3940 3.9493 -2.9407 12 1 5.2818 4.0111 -2.3288 13 6 4.4903 3.5499 -4.2568 14 7 5.6723 3.3745 -4.8060 15 14 2.9418 3.2577 -5.2598 16 1 2.4880 4.5404 -5.8549 17 1 3.2303 2.2841 -6.3435 18 1 1.8761 2.7163 -4.3788 19 6 3.0844 5.7170 -1.7458 20 1 2.1081 6.1965 -1.8168 21 8 4.0877 6.5166 -2.3750 22 6 3.8454 7.9227 -2.2942 23 6 3.4499 5.4353 -0.2734 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0831 1.5651 2.1329 30 1 2.9025 3.8844 2.1300 31 1 2.0820 1.5623 -2.1302 32 1 5.7401 3.0932 -5.7318 33 1 4.6510 8.4595 -2.7952 34 1 2.8973 8.1564 -2.7785 35 1 3.8030 8.2245 -1.2477 36 1 4.5299 5.4882 -0.1359 37 1 2.9503 6.1470 0.3838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:48 Heat of formation + Delta-G solvation = -48.936898 kcal Electronic energy + Delta-G solvation = -17992.479511 eV Core-core repulsion = 15312.384828 eV Total energy + Delta-G solvation = -2680.094683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14581 -38.79198 -36.43300 -34.75980 -33.37906 -31.78561 -29.71995 -28.55735 -27.12057 -25.61820 -24.10142 -22.96785 -21.37264 -20.62050 -19.24913 -17.35803 -16.99020 -16.53090 -16.16532 -16.04330 -15.39383 -15.20040 -14.84217 -14.64749 -14.24714 -14.16478 -13.91554 -13.64622 -13.32702 -12.93138 -12.75724 -12.62054 -12.56965 -12.18316 -12.00931 -11.86275 -11.72129 -11.57796 -11.30883 -11.21855 -10.69595 -10.24201 -9.51085 -9.09809 -8.25191 -6.23539 0.56453 0.66848 1.29958 1.32528 1.41610 2.34166 2.92497 3.02575 3.21743 3.61839 3.95119 4.00146 4.14392 4.24734 4.28525 4.48556 4.52154 4.56404 4.60611 4.66166 4.68414 4.75748 4.81325 4.89094 4.94139 5.05731 5.09371 5.10781 5.15661 5.31991 5.40769 5.47781 5.56416 5.64400 5.83669 5.99093 6.25898 6.31485 6.62469 6.82490 7.35758 8.92837 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.009572 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.735628 B = 2924.465722 C = 3998.909990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.131 4.131 5 C -0.105 4.105 6 C -0.125 4.125 7 C -0.080 4.080 8 C -0.132 4.132 9 C 0.037 3.963 10 H 0.042 0.958 11 C -0.462 4.462 12 H 0.024 0.976 13 C 0.012 3.988 14 N -0.949 5.949 15 Si 0.936 3.064 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.250 1.250 19 C 0.088 3.912 20 H 0.077 0.923 21 O -0.383 6.383 22 C 0.019 3.981 23 C -0.085 4.085 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.761 0.158 11.614 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.149 4.149 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.150 4.150 9 C 0.018 3.982 10 H 0.060 0.940 11 C -0.499 4.499 12 H 0.043 0.957 13 C -0.184 4.184 14 N -0.590 5.590 15 Si 0.760 3.240 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.174 1.174 19 C 0.030 3.970 20 H 0.095 0.905 21 O -0.302 6.302 22 C -0.078 4.078 23 C -0.123 4.123 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.169 0.831 30 H 0.161 0.839 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.506 0.033 11.352 16.164 hybrid contribution -0.006 0.064 -1.060 1.062 sum -11.512 0.097 10.293 15.442 Atomic orbital electron populations 1.21710 0.93720 1.02471 1.01841 1.20563 0.96992 0.91104 1.03225 1.20036 0.99111 0.97171 0.92373 1.21105 1.01343 0.94533 0.97910 1.20841 0.99582 0.95144 0.96731 1.20630 1.01270 0.96864 0.93710 1.21066 0.95329 0.95081 0.96613 1.20565 1.02358 0.94040 0.98018 1.18904 0.95653 0.90696 0.92986 0.94004 1.20499 0.91427 1.42482 0.95540 0.95742 1.25858 0.98811 0.95097 0.98610 1.70049 1.25358 1.49637 1.13960 0.85907 0.80710 0.78787 0.78553 1.19205 1.21214 1.17370 1.22779 0.90246 0.92348 0.91645 0.90530 1.88252 1.47214 1.16941 1.77764 1.22958 1.01643 0.81934 1.01233 1.21352 1.00776 0.93387 0.96736 0.90695 0.91883 0.94006 0.91970 0.89149 0.83051 0.83932 0.88404 0.92755 0.89688 0.93535 0.92754 0.91683 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.89 71.98 0.71 -2.20 16 2 C -0.08 -2.02 6.07 29.85 0.18 -1.83 16 3 C -0.09 -2.81 5.13 -19.89 -0.10 -2.91 16 4 C -0.13 -3.75 9.70 22.24 0.22 -3.54 16 5 C -0.11 -3.26 10.04 22.30 0.22 -3.03 16 6 C -0.12 -4.77 6.14 -19.59 -0.12 -4.89 16 7 C -0.08 -3.56 5.43 -19.59 -0.11 -3.66 16 8 C -0.13 -5.37 9.70 22.30 0.22 -5.15 16 9 C 0.04 1.79 2.72 -11.62 -0.03 1.76 16 10 H 0.04 2.04 4.90 -2.39 -0.01 2.03 16 11 C -0.46 -27.54 7.89 25.60 0.20 -27.34 16 12 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 13 C 0.01 0.75 5.47 84.66 0.46 1.22 16 14 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 15 Si 0.94 46.00 26.97 68.60 1.85 47.85 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 18 H -0.25 -11.44 6.79 99.48 0.68 -10.76 16 19 C 0.09 3.66 3.35 31.50 0.11 3.76 16 20 H 0.08 2.72 7.88 -2.39 -0.02 2.70 16 21 O -0.38 -17.25 9.29 -148.98 -1.38 -18.63 16 22 C 0.02 0.59 10.88 113.37 1.23 1.83 16 23 C -0.09 -3.13 6.51 30.51 0.20 -2.94 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 28 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 29 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.05 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 2.62 8.10 -2.39 -0.02 2.60 16 37 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -72.49 304.70 5.16 -67.33 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.00 Total: 13.68 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 3.39 Total: -48.92 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.30 Total: -61.31 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.38 Total: -18.63 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.85 Total: 47.85 kcal Total: -72.49 5.16 -67.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.393 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds